BAC Information

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BAC

Clone NameB6Ng01-144K04
Chromosome16 (Build37)13 (Build37)
Map Location 71,799,085 - 71,799,362103,627,526 - 103,628,458
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039231
Downstream geneRobo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144K04.bB6Ng01-144K04.g
ACCDH942260DH942261
length974933
definitionDH942260|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K04, 5' end.DH942261|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,799,085 - 71,799,362)(103,627,526 - 103,628,458)
sequence
gaattccctgatcatttggggataaagaacgttttaaaagcagacctgtg
ggggtggggggaaggctcactggctgctctctgcacaactgtctgtggca
tttagcctctgtgggcaccaggcatgcacatggtacatagacatatatct
agacaagcttatacatataaataataagttaataaaaattaattaaagca
gaggtgtagctttcacaactgtgttttggtgctttgaggaatgttgcctt
tgggttcttctaatgttaatagacctaaatttaggaaatgaggtagtatt
cattcattcattcattcattcactttacatcctgatctcagcctcacccc
ctccctccagtctcaccctcacaaggtcctcccccactaacctctcccct
ctcctcagagaaaagaaagcccccatgggtaccaaccctccctagccctt
caagtctcaacaggactaagtgcattctctcccactgaggccagacaaga
aggagatccaaaggcagacaagtcaaggacatcctctgttccagttgtta
ggggaacccacatgaagaccaggttgcagatctgctacaaacgtgtaggg
agcctagctccagctcctgcgtgctctttggttggtggttcagtctttgt
gagtccccatgggcccagattagtttgtgtggtgtccttgacccttccag
ctctctcaatcctatatcccactcttccatgagactccccaaagtctgcc
taatgtttggctgtgggtgtctgcatctgcttccatcagctgctggagaa
acctctcagaagacagctatgccaggctcctgcctgccattcatagcagg
taccattaatcgtttcagggttggcttctctcctatgggatgggtctcaa
gttgggccagtcattagttgatcattcaccccaccaatgctccatcttat
ctctgccatccttaaggcaggaca
gaattcatctggctaaccctctctactcaggtttcccaggtgtgccctgg
agtgaccctgtcaagatagcatgctgtcaccatggtaagcagcctttgtc
ttaggaggagtaccccatcttgcttgagtcctgtcttccataggttgatg
ccaccacccacactgccagatgtccttgtatttagaagacagacacagct
gtgtttagctaagcctaaacacgactttggaactggagaaggttgtatga
ggctctgcctaaggaatcgactttggtggcagaagagtggtagaagtttt
ccttggtgatagtcgcacacacgtttaatatcccagcactggggaggaga
ggcaggtggttctctgtgagctagaggccagcctgccagcctggtctaca
gagtgaggtcccggatagcccagggtttcacagggaaaccctctctcaaa
caaacaaacaaacaaacaaacaaacaaacaaaaccaaaaacaacaagttt
cctttgggggacatcactgttagtttctagaactcagaaccctgagcagc
agtacctgtggctccctctgcactctgctatctcacagcctgggtgttct
tccaggttgcacagtttccggtactcactctggcattcctgaatattctg
tgatctatcacattctgcatctccttcaacatgtgtgctttctgagatgt
taacagagttagacagacacatacgtgtgctcatgaactctgatgggaag
tctcccaacatttatccttttcttcaatgaggatggcaggtcgttattca
caataactcagctttcaataaggttctgtttttgattcttgtttttttat
tttcatagcaatctctttcaagactcctttctggtttttatgaagcatac
ttcctgctcttggggatttgtgggggggagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_71799085_71799362
seq2: B6Ng01-144K04.b_797_1010 (reverse)

seq1  TAAGGATGGCAGAGATACAGACTAAAGAGAAATAAATGGCAAAGAAGAGA  50
      ||||||||||||||||        ||||   |  | |||    |  | ||
seq2  TAAGGATGGCAGAGAT--------AAGATGGAGCATTGG---TGGGGTGA  39

seq1  AGACAACTGCAAGCTTCTACGGGTTAATGACTAATTCATAGACGCACCTT  100
      |      ||      || ||    ||||||||        | | || | |
seq2  A------TG-----ATCAAC----TAATGACT--------GGCCCAAC-T  65

seq1  TGAGTCTTAAACAGTATTCAAAAGGGACTTTGTGATGCTA--TCTGCAAT  148
      |||| |         || | | |||      | || || |   ||| || 
seq2  TGAGAC-------CCATCCCATAGG-----AGAGAAGCCAACCCTGAAAC  103

seq1  G-GAAATGTTACAGTGTCTGACAAAAAATCTTGGAACCCTGAGTGAGACA  197
      |   |||| |||     |||         ||  |||      |  || ||
seq2  GATTAATGGTAC-----CTG---------CTATGAA-----TGGCAGGCA  134

seq1  TGATCGTAGTATAACTATATTCTGAGGACCTTCACCCAGTAGCCAATGGA  247
       || | | | ||| || | |||||| ||  ||   |||| |||  |||||
seq2  GGAGCCTGGCATAGCTGTCTTCTGA-GAGGTTTCTCCAGCAGCTGATGGA  183

seq1  AGCAGGTGCAGAGACTCACAGCCAAACATTA  278
      ||||| |||||| || |||||||||||||||
seq2  AGCAGATGCAGACACCCACAGCCAAACATTA  214

seq1: chr13_103627526_103628458
seq2: B6Ng01-144K04.g_69_1001

seq1  GAATTCATCTGGCTAACCCTCTCTACTCAGGTTTCCCAGGTGTGCCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGGCTAACCCTCTCTACTCAGGTTTCCCAGGTGTGCCCTGG  50

seq1  AGTGACCCTGTCAAGATAGCATGCTGTCACCATGGTAAGCAGCCTTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCCTGTCAAGATAGCATGCTGTCACCATGGTAAGCAGCCTTTGTC  100

seq1  TTAGGAGGAGTACCCCATCTTGCTTGAGTCCTGTCTTCCATAGGTTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGAGTACCCCATCTTGCTTGAGTCCTGTCTTCCATAGGTTGATG  150

seq1  CCACCACCCACACTGCCAGATGTCCTTGTATTTAGAAGACAGACACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCCACACTGCCAGATGTCCTTGTATTTAGAAGACAGACACAGCT  200

seq1  GTGTTTAGCTAAGCCTAAACACGACTTTGGAACTGGAGAAGGTTGTATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGCTAAGCCTAAACACGACTTTGGAACTGGAGAAGGTTGTATGA  250

seq1  GGCTCTGCCTAAGGAATCGACTTTGGTGGCAGAAGAGTGGTAGAAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCCTAAGGAATCGACTTTGGTGGCAGAAGAGTGGTAGAAGTTTT  300

seq1  CCTTGGTGATAGTCGCACACACGTTTAATATCCCAGCACTGGGGAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGATAGTCGCACACACGTTTAATATCCCAGCACTGGGGAGGAGA  350

seq1  GGCAGGTGGTTCTCTGTGAGCTAGAGGCCAGCCTGCCAGCCTGGTCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGTTCTCTGTGAGCTAGAGGCCAGCCTGCCAGCCTGGTCTACA  400

seq1  GAGTGAGGTCCCGGATAGCCCAGGGTTTCACAGGGAAACCCTCTCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGTCCCGGATAGCCCAGGGTTTCACAGGGAAACCCTCTCTCAAA  450

seq1  CAAACAAACAAACAAACAAACAAACAAACAAAACCAAAAACAACAAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAACAAACAAACAAAACCAAAAACAACAAGTTT  500

seq1  CCTTTGGGGGACATCACTGTTAGTTTCTAGAACTCAGAACCCTGAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGGGACATCACTGTTAGTTTCTAGAACTCAGAACCCTGAGCAGC  550

seq1  AGTACCTGTGGCTCCCTCTGCACTCTGCTATCTCACAGCCTGGGTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTGTGGCTCCCTCTGCACTCTGCTATCTCACAGCCTGGGTGTTCT  600

seq1  TCCAGGTTGCACAGTTTCCGGTACTCACTCTGGCATTCCTGAATATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTGCACAGTTTCCGGTACTCACTCTGGCATTCCTGAATATTCTG  650

seq1  TGATCTATCACATTCTGCATCTCCTTCAACATGTGTGCTTTCTGAGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTATCACATTCTGCATCTCCTTCAACATGTGTGCTTTCTGAGATGT  700

seq1  TAACAGAGTTAGACAGACACATACGTGTGCTCATGAACTCTGATGGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGTTAGACAGACACATACGTGTGCTCATGAACTCTGATGGGAAG  750

seq1  TCTCCCAACATTTATCCTTTTCTTCAATGAGGATGGCAGGTCGTTATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAACATTTATCCTTTTCTTCAATGAGGATGGCAGGTCGTTATTCA  800

seq1  CAATAACTCAGCTTTCAAATAAGGTTCTGTTTTTGATTCTTGTTTTTTTA  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAATAACTCAGCTTTC-AATAAGGTTCTGTTTTTGATTCTTGTTTTTTTA  849

seq1  TTTTCATAGCAATCTCTTTCAAGACTCC-TTCTGGTTTTTATGAAGCATA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTCATAGCAATCTCTTTCAAGACTCCTTTCTGGTTTTTATGAAGCATA  899

seq1  CTTCCTGCTCTTTGGGGATGTGT-GGTGGGAGGGT  933
      |||||||||| |||||||| ||| || ||||||||
seq2  CTTCCTGCTC-TTGGGGATTTGTGGGGGGGAGGGT  933