BAC Information

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BAC

Clone NameB6Ng01-145G06
Chromosome13 (Build37)
Map Location 66,138,423 - 66,187,007
singlet/doubletdoublet
Overlap geneLOC100042434
Upstream gene4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746
Downstream geneLOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145G06.bB6Ng01-145G06.g
ACCDH942806DH942807
length9021,059
definitionDH942806|Mus musculus domesticus DNA, BAC clone: B6Ng01-145G06, 5' end.DH942807|Mus musculus domesticus DNA, BAC clone: B6Ng01-145G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,138,423 - 66,139,077)(66,185,937 - 66,187,007)
sequence
gaattctgggtatatgatgatctgcctaactcttttgtttgttctttgat
ttttgagtaaatgtaattatttttctgtgtgcatgaatatgaatatcatg
tgtgcatcatttctactgttgtcagtaggtggtatcacaacgcctgatct
tgaagtaatgggtaggtagttgctggtccccatgtaaatgctaaatattg
accacagttatgtggaagacaagcaagagctttccacagctgagctatct
ctcctgccctatcttgcatatttgtgatcaacatttatactactagtatt
ttaattggtccatttgtaactctttatagattcattctcttttagcaaaa
ttttattttatttatttattttttttttttttttggtttttttttttttt
ttccgagacagggtttctctgtatagcctggctgtcctggaactcacttt
gtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctccca
agtgctaggattaaaggcgtgcgccaccacgcccggctgcaaaattttat
taatgttgcaatttaaattggtatacttcatgtttctgcaagatgaatac
agaactgcagttaatgtataattctttgtaggaatttcagtgcagaacta
tgggttctttctgtcatttctgtttccttgggtgctatttgcagggggag
tgagagtcttaatatgtaacttttgctgtcctggaatcggtttcatagat
gatgcaggcctccagcttgaggaaatacaccttcctatgcctctggatta
aagtgctgagcaaatacccccatcttgtccaatatttttgtagttagtaa
ttgttcatacagtttctcagatgtgggcttggtactgttgatctgtatcc
cc
gaattctttagtgtccaaagacataaaggagcagatctgagcatctgtat
ctcagggtcgggatcttttgctgggtgggcagctttgtccctgtgtcacc
cagagccgtccacaccatcggacattgttttattttgctcttgagatgca
tggggtgtgtgacagtaaaacagaaactgtaggagtccaccaaaagaccc
tctttcacaaagaccacaaacagacattgttgcaaaccacaagaggtttt
tttaattgatccaacacgttggggaacacccttcaacacacaggcaagag
aaaaggccccaaacaaacaaagaacacactttttattccttggaaggggc
aggtttaggcaacaggtctaactggcttattctaattggtatagcaagta
accctttcaggcattggttggtttgaatagagtgactacctttggcctag
tccctcactccacctgcccttatggtttttctcagaattgtttagtcggc
ctgcttccttatctggctctgcacttggcctgctagtatcttttggaaag
tcccttcagagggaaaaagggctaggtggtcttgaatttattttggatta
tacaaaaccaaacccttgtctccactgaagcccacagggaatctaaagaa
actacaggtggcataaaccagctacatttccacccctccaactccagtgg
acactggctgacacctctgtgcagagcccgtaggtcctagatcccacagt
aacttgggcaggtatgggacaggtggttcaatgaagacagacttgggtgt
cctctcttttggagagcttagctaaagaccaggcacctgggctgggagat
aagggtcagccaatgatggcttccaaagcctgaggacctatgcttgcaaa
ctcagtcctgggaggcagagacaggcaaatccctggactttgctggtcat
ctaatgggctagcctggctctcagtgactttcatgtgtcatcatgggacg
actctgagctgttctctcctctacttatatgactacaggagtgtgataaa
gtcaccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66138423_66139077
seq2: B6Ng01-145G06.b_44_892

seq1  GAATTCTGGGTATATGATGATCTGCCTAACTCTTTTGTTTGTTCTTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTATATGATGATCTGCCTAACTCTTTTGTTTGTTCTTTGAT  50

seq1  TTTTGGGTAAATGTAATTATTTTTCTGTGTGCATGAATATGAATATCATG  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTAAATGTAATTATTTTTCTGTGTGCATGAATATGAATATCATG  100

seq1  TGTGCATCATTTCTACTGTTGTCAGTAGGTGGTATCAGAACGCCTGATCT  150
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTGCATCATTTCTACTGTTGTCAGTAGGTGGTATCACAACGCCTGATCT  150

seq1  TGAAGTAATGGGTAGGTAGTTGCTGGTCCCCATGTAAATGCTAAATATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAATGGGTAGGTAGTTGCTGGTCCCCATGTAAATGCTAAATATTG  200

seq1  ACCACAGTTATGTGGAAGACAAGCAAGAGCTTTCCACAGCTGAGCTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTTATGTGGAAGACAAGCAAGAGCTTTCCACAGCTGAGCTATCT  250

seq1  CTCCTGCCCTATCTTGCATATTTGTGATCAACATTTATACTACTAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCCTATCTTGCATATTTGTGATCAACATTTATACTACTAGTATT  300

seq1  TTAATTGGTCCATTTGTAACTCTTTATAAATTCATTCTCTTTTA------  344
      |||||||||||||||||||||||||||| |||||||||||||||      
seq2  TTAATTGGTCCATTTGTAACTCTTTATAGATTCATTCTCTTTTAGCAAAA  350

seq1  --------------------------------------------------  344
                                                        
seq2  TTTTATTTTATTTATTTATTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTT  400

seq1  --------------------------------------------------  344
                                                        
seq2  TTCCGAGACAGGGTTTCTCTGTATAGCCTGGCTGTCCTGGAACTCACTTT  450

seq1  --------------------------------------------------  344
                                                        
seq2  GTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCA  500

seq1  --------------------------------------GCAAAATTTTAT  356
                                            ||||||||||||
seq2  AGTGCTAGGATTAAAGGCGTGCGCCACCACGCCCGGCTGCAAAATTTTAT  550

seq1  TAATGTTGCAATTTAAACTGGTGTAATTCATGTTTCTTCAAGATGAATAC  406
      ||||||||||||||||| |||| || ||||||||||| ||||||||||||
seq2  TAATGTTGCAATTTAAATTGGTATACTTCATGTTTCTGCAAGATGAATAC  600

seq1  AGAACTGCAGTTAATGTATAATTCTTTGTAGTAATTTCAGTGCAGAACTA  456
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAACTGCAGTTAATGTATAATTCTTTGTAGGAATTTCAGTGCAGAACTA  650

seq1  TGGGTTCTTTCTGTCATTTCTGTTTCCTTGGGTGATATTTGCAGGGGGAG  506
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGGTTCTTTCTGTCATTTCTGTTTCCTTGGGTGCTATTTGCAGGGGGAG  700

seq1  TGAGAGTCTTAATATGTAACTTTTGCTGTCCTGGAATCGGTTTCATAGAT  556
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCTTAATATGTAACTTTTGCTGTCCTGGAATCGGTTTCATAGAT  750

seq1  GATGCAGGCCTCCAGCTTGAGGAAATACACCTTCCTATGCCTCTGGATTA  606
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGCCTCCAGCTTGAGGAAATACACCTTCCTATGCCTCTGGATTA  800

seq1  AAGTGCTGAGCAAATACCCCCATCTTGTCCAATATTTTTGTAGTTAGTA  655
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGAGCAAATACCCCCATCTTGTCCAATATTTTTGTAGTTAGTA  849

seq1: chr13_66185937_66187007
seq2: B6Ng01-145G06.g_68_1126 (reverse)

seq1  CCTGGTGATCTTTATCACACCCCTGTAGACCATATAAAGTTAGAGGAGAG  50
      |||||||| ||||||||||| |||||||  |||||||   ||||||||||
seq2  CCTGGTGA-CTTTATCACACTCCTGTAG-TCATATAA--GTAGAGGAGAG  46

seq1  AACCGGCTCAGAGTCGTCCCATGATTGACACATGAAAGTTCACTGAGAGC  100
      || | ||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AA-CAGCTCAGAGTCGTCCCATGA-TGACACATGAAAG-TCACTGAGAGC  93

seq1  CAAGGCTAGCCCATTAAGATGGACCAGCAAGGTCCAGGGATTTGCCTGTC  150
      | ||||||||||||| |||| ||||||||| |||||||||||||||||||
seq2  C-AGGCTAGCCCATT-AGAT-GACCAGCAAAGTCCAGGGATTTGCCTGTC  140

seq1  TCTGCCTCCCCAGGACTGAGTTTGCAAGCACAGGTCCTCAGGCTTTGGAA  200
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGCCT-CCCAGGACTGAGTTTGCAAGCATAGGTCCTCAGGCTTTGGAA  189

seq1  GCCATCATTGTCTGACCCTTATCTCCCAGCCCAGGTGTCTGGTCTTTAGC  250
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  GCCATCATTGGCTGACCCTTATCTCCCAGCCCAGGTGCCTGGTCTTTAGC  239

seq1  TAAGCTCTCCAAAAGAGAGGACACCCAAGTCTGTCTTCATTGAAACACCC  300
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  TAAGCTCTCCAAAAGAGAGGACACCCAAGTCTGTCTTCATTGAACCACCT  289

seq1  GTACCAGACCTGCTAGAGTTACTGTGGGATCTGGGACCTACGGGCTCTGC  350
      || ||| ||||||   |||||||||||||||| |||||||||||||||||
seq2  GTCCCATACCTGCCCAAGTTACTGTGGGATCTAGGACCTACGGGCTCTGC  339

seq1  ACAGAGGTGTCAGCCAGTGTCCACTGGAGTTGGAGGGGTGGAAATGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACAGAGGTGTCAGCCAGTGTCCACTGGAGTTGGAGGGGTGGAAATGTAGC  389

seq1  TGGTTTATGCCACCTGTAGTTTCTTTAGATTCCCTGTGGGCTTCAGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATGCCACCTGTAGTTTCTTTAGATTCCCTGTGGGCTTCAGTGGA  439

seq1  GACGAGGGTTTGGTTTTGTATAATCCAAAATAAATTCAAGACCACCTAGC  500
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGGTTTGGTTTTGTATAATCCAAAATAAATTCAAGACCACCTAGC  489

seq1  CCCTTTTCCCTCTGAAGGGACTTTCCAAAAGATACTAGCAGGCCAAGTAC  550
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTTTTTCCCTCTGAAGGGACTTTCCAAAAGATACTAGCAGGCCAAGTGC  539

seq1  AGAGCCAGATAAGGAAGCAGGCAGACTAAACAATGCTGAGAAAAACCATA  600
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  AGAGCCAGATAAGGAAGCAGGCCGACTAAACAATTCTGAGAAAAACCATA  589

seq1  AGGGCAGGTGGAGTGAGGGACTAGGCCAAAGGTAGTCACTCTATTCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGTGGAGTGAGGGACTAGGCCAAAGGTAGTCACTCTATTCAAAC  639

seq1  CAACCAATGCCTGAAAGGGTTACTTGCTATAGCAATTAGAATAAGCCAGT  700
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAACCAATGCCTGAAAGGGTTACTTGCTATACCAATTAGAATAAGCCAGT  689

seq1  TAGACCTGTTGCCTAAACCTGCCCCTTCCAAGGTATAAAAAGTGTGTTCT  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGACCTGTTGCCTAAACCTGCCCCTTCCAAGGAATAAAAAGTGTGTTCT  739

seq1  TTGTTTGTTTGGGGCCTTTTCTCTTGCCTGTGTGTTGAAGGGTGTTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGGGGCCTTTTCTCTTGCCTGTGTGTTGAAGGGTGTTCCCC  789

seq1  AACGTGTTGGATCAATTAAAAAAACGTCTTGTGGTTTGCAACAATGTCTG  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACGTGTTGGATCAATTAAAAAAACCTCTTGTGGTTTGCAACAATGTCTG  839

seq1  TTTGTGGTCTTTGTGAATGAGGGTCTTTTGGTGGACTCCTACAGTTTCTG  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTGTGGTCTTTGTGAAAGAGGGTCTTTTGGTGGACTCCTACAGTTTCTG  889

seq1  TTTTACTGTCACACACCCCATGCATCTCAAGAGCAAAATAACACAATGTC  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTACTGTCACACACCCCATGCATCTCAAGAGCAAAATAAAACAATGTC  939

seq1  CGATGGTGTTGACAGCTCTGGGTGACACAGGGACAAAGCTGCCCACCCAG  1000
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  CGATGGTGTGGACGGCTCTGGGTGACACAGGGACAAAGCTGCCCACCCAG  989

seq1  GAAAAGATCCCGACCCTGAGACACAGATGCTCAGATCTGCCTCCTTTCTG  1050
       |||||||||||||||||||| ||||||||||||||||| ||||||| ||
seq2  CAAAAGATCCCGACCCTGAGATACAGATGCTCAGATCTG-CTCCTTTATG  1038

seq1  TCTTTGGACAGTAAAGGATTC  1071
      |||||||||| ||||| ||||
seq2  TCTTTGGACACTAAAGAATTC  1059