BAC Information

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BAC

Clone NameB6Ng01-146E16
Chromosome13 (Build37)
Map Location 82,084,629 - 82,247,668
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756, LOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146E16.bB6Ng01-146E16.g
ACCDH943472DH943473
length1,1481,037
definitionDH943472|Mus musculus domesticus DNA, BAC clone: B6Ng01-146E16, 5' end.DH943473|Mus musculus domesticus DNA, BAC clone: B6Ng01-146E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,246,507 - 82,247,668)(82,084,629 - 82,085,672)
sequence
gaattcattaaaatttttaaagcatattgctcaataattagcttttgatg
ctaacaagcattataaattttccaatagttttatctagaagttttcggta
tcctccaatatccactactaactatatagggttaaattttttaaatgtaa
atttgaaaaaaagagatctctctataaaggtgtagatgccaacaaaagct
ggtataagagtaaccttggatgcacacagaaaggagccacgaggacaaga
aggcaaacactctcactgctggcattgggaccatgggtctagaccctgaa
cttctccatgtaagtactttgctcctactagagtttttctttcagcatgc
tttcactgatgtcatactttggtattcacaacaatcatacaatggaaaaa
gaacaattgttattcatccagagctgcaggaaagaagaggtcaggtcaag
caacttgcttacaggtataaagtcaaaattcaaaacaacagctccaagag
caagactacccttcctatagatacactgaacacaagttcttccaacactg
tgcatcatgaaacaaaatgctcatcctatactactgaaaacacacatgct
actcttgcttgttttcctgtaataaccttagggtattcggttttaaaata
tccttcaacctccacttctgctatgttctcatcatggtttatgggtgttt
taatagttttttaatatataattaataattcactttctctttgtcaatta
ttctaagaataagagcagaagagatgctttaaaatgatataaatctctcc
tagacccctggaagatagacatcttggctattaaataatgtgaagaagtg
gatagaagaacagaaaactccccagtgccccagctgtaagcacagtggtc
caaaaggtgtgaaggttttacagggtcataaagagtaaaagtcttgccct
ggttcttattggtctccatagatggctttgtagcaattctatatcagtga
cttagggttaccatgcagaataatgcagcacacatgagcaaagaaaaaga
ctgagcttactgctccaattccttatctccttccaaggtggagaaccctg
gaatgctttgtgctctggattaaagttaacgtacctggggatcaggtg
gaattcttggattatctccagtagaaaaggcatcctctggctgattggga
ggatcgctccttaagcgacatcgaggagcacggtatggagaactgaaggt
gacccgagatcgtgcagagtccccagaatgaaaaggctcctccttgaaca
atgaacgctcacaaagatgaggaatttatctgccgcattgcaagcggcag
agggcagggaccccaggggaggcaagcgttgccttccctccctctaacct
gttggcaaggctaagggttaaagggctgctctggagagcgaagcggggag
taagaaggcagctaatagattcttcactacagctcctcctgtttcccatc
aaggaagggagacgtttttcactcttcttggaaaaactttgaaatgtaaa
ctgtttcgattgatggctccttctggccctggcaactctttttggtagct
ggtgctctttctgtaatacttgttaaaaacgtctctgtagcaaagatgtt
gttttttatgtgattttttttttttaagtcagcgcatgtgtgagtacaga
caggctctcatcttgcacggcggagacaggcaggtgaacacctccctccc
gtagtccttattcatttgcaatactttatatgattagcctctcagaaagc
tgttttcagtcgaaactgtcaatccacttccaatgtggcccctctccctg
gaaaggaggaggctgtggccacaagcccctttcttagcctggatacattt
aatatgccagataaccgctaaccctcccatagaaggattgctgagaatgt
tttaaggaaagctatacatgttttatcttaaagatcatatttagtattta
aaccacatacacttcctctaaccacctacacaattttaattgttttttct
tttaataaaaattccattttatcagacatctatgaaatgtctatgtgcag
tgaattaatatctgttaatggttttaacttcattttcgaaaatgcagaag
gtaaaattcatcatcctgcttaaataagatcatcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82246507_82247668
seq2: B6Ng01-146E16.b_47_1194 (reverse)

seq1  CACCTGGACTCCCAGGTACCTTTAACTTCTATATCAGAGGCACAGAAGCA  50
      ||||| ||  |||||||| | ||||||| ||   |||| ||||| |||||
seq2  CACCT-GATCCCCAGGTA-CGTTAACTT-TAATCCAGA-GCACA-AAGCA  45

seq1  ATCTCAGGTTTCTTCCACACTGTGGAGGAGATAAGGAATTTGAAGCAGTT  100
       || |||| ||| ||||| ||  | ||||||||||||| ||| |||||| 
seq2  TTC-CAGGGTTC-TCCAC-CTTGGAAGGAGATAAGGAA-TTGGAGCAGTA  91

seq1  AGCTCAGTCTTTTTCTCTGCTCATGTGTGCTGCATTATTCTGCATTGGTA  150
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  AGCTCAGTCTTTTTCTTTGCTCATGTGTGCTGCATTATTCTGCA-TGGTA  140

seq1  ACCCTTAAGTCACTGATATTAGAATTGCTACAAAGCCATCTATGGAGACC  200
      |||| ||||||||||||| ||||||||||||||||||||||||||||| |
seq2  ACCC-TAAGTCACTGATA-TAGAATTGCTACAAAGCCATCTATGGAGA-C  187

seq1  CAATAAGAACCAGGGCAAGACTTTTTACTCTTTATGACCCTGTAAAACCT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAATAAGAACCAGGGCAAGAC-TTTTACTCTTTATGACCCTGTAAAACCT  236

seq1  TCACACCTTTTGGACCACTGTGCTTACAGCTGGGGCACTGGGGAGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCTTTTGGACCACTGTGCTTACAGCTGGGGCACTGGGGAGTTTTC  286

seq1  TGTTCTTCTATCCACTTCTTCACATTATTTAATAGCCAAGATGTCTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCTATCCACTTCTTCACATTATTTAATAGCCAAGATGTCTATCT  336

seq1  TCCAGGGGTCTAGGAGAGATTTATATCATTTTAAAGCATCTCTTCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGTCTAGGAGAGATTTATATCATTTTAAAGCATCTCTTCTGCTC  386

seq1  TTATTCTTAGAATAATTGACAAAGAGAAAGTGAATTATTAATTATATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTAGAATAATTGACAAAGAGAAAGTGAATTATTAATTATATATT  436

seq1  AAAAAACTATTAAAACACCCATAAACCATGATGAGAACATAGCAGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTATTAAAACACCCATAAACCATGATGAGAACATAGCAGAAGTG  486

seq1  GAGGTTGAAGGATATTTTAAAACCGAATACCCTAAGGTTATTACAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGAAGGATATTTTAAAACCGAATACCCTAAGGTTATTACAGGAAA  536

seq1  ACAAGCAAGAGTAGCATGTGTGTTTTCAGTAGTATAGGATGAGCATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAGAGTAGCATGTGTGTTTTCAGTAGTATAGGATGAGCATTTTG  586

seq1  TTTCATGATGCACAGTGTTGGAAGAACTTGTGTTCAGTGTATCTATAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATGCACAGTGTTGGAAGAACTTGTGTTCAGTGTATCTATAGGA  636

seq1  AGGGTAGTCTTGCTCTTGGAGCTGTTGTTTTGAATTTTGACTTTATACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGTCTTGCTCTTGGAGCTGTTGTTTTGAATTTTGACTTTATACCT  686

seq1  GTAAGCAAGTTGCTTGACCTGACCTCTTCTTTCCTGCAGCTCTGGATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAAGTTGCTTGACCTGACCTCTTCTTTCCTGCAGCTCTGGATGAA  736

seq1  TAACAATTGTTCTTTTTCCATTGTATGATTGTTGTGAATACCAAAGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTGTTCTTTTTCCATTGTATGATTGTTGTGAATACCAAAGTATG  786

seq1  ACATCAGTGAAAGCATGCTGAAAGAAAAACTCTAGTAGGAGCAAAGTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTGAAAGCATGCTGAAAGAAAAACTCTAGTAGGAGCAAAGTACT  836

seq1  TACATGGAGAAGTTCAGGGTCTAGACCCATGGTCCCAATGCCAGCAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGAGAAGTTCAGGGTCTAGACCCATGGTCCCAATGCCAGCAGTGA  886

seq1  GAGTGTTTGCCTTCTTGTCCTCGTGGCTCCTTTCTGTGTGCATCCAAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTGCCTTCTTGTCCTCGTGGCTCCTTTCTGTGTGCATCCAAGGT  936

seq1  TACTCTTATACCAGCTTTTGTTGGCATCTACACCTTTATAGAGAGATCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTATACCAGCTTTTGTTGGCATCTACACCTTTATAGAGAGATCTC  986

seq1  TTTTTTTCAAATTTACATTTAAAAAATTTAACCCTATATAGTTAGTAGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAAATTTACATTTAAAAAATTTAACCCTATATAGTTAGTAGTG  1036

seq1  GATATTGGAGGATACCGAAAACTTCTAGATAAAACTATTGGAAAATTTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGGAGGATACCGAAAACTTCTAGATAAAACTATTGGAAAATTTAT  1086

seq1  AATGCTTGTTAGCATCAAAAGCTAATTATTGAGCAATATGCTTTAAAAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGTTAGCATCAAAAGCTAATTATTGAGCAATATGCTTTAAAAAT  1136

seq1  TTTAATGAATTC  1162
      ||||||||||||
seq2  TTTAATGAATTC  1148

seq1: chr13_82084629_82085672
seq2: B6Ng01-146E16.g_67_1103

seq1  GAATTCTTGGATTATCTCCAGTAGAAAAGGCATCCTCTGGCTGATTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGATTATCTCCAGTAGAAAAGGCATCCTCTGGCTGATTGGGA  50

seq1  GGATCGCTCCTTAAGCGACATCGAGGAGCACGGTATGGAGAACTGAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGCTCCTTAAGCGACATCGAGGAGCACGGTATGGAGAACTGAAGGT  100

seq1  GACCCGAGATCGTGCAGAGTCCCCAGAATGAAAAGGCTCCTCCTTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGAGATCGTGCAGAGTCCCCAGAATGAAAAGGCTCCTCCTTGAACA  150

seq1  ATGAACGCTCACAAAGATGAGGAATTTATCTGCCGCATTGCAAGCGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACGCTCACAAAGATGAGGAATTTATCTGCCGCATTGCAAGCGGCAG  200

seq1  AGGGCAGGGACCCCAGGGGAGGCAAGCGTTGCCTTCCCTCCCTCTAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGGACCCCAGGGGAGGCAAGCGTTGCCTTCCCTCCCTCTAACCT  250

seq1  GTTGGCAAGGCTAAGGGTTAAAGGGCTGCTCTGGAGAGCGAAGCGGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAAGGCTAAGGGTTAAAGGGCTGCTCTGGAGAGCGAAGCGGGGAG  300

seq1  TAAGAAGGCAGCTAATAGATTCTTCACTACAGCTCCTCCTGTTTCCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGCAGCTAATAGATTCTTCACTACAGCTCCTCCTGTTTCCCATC  350

seq1  AAGGAAGGGAGACGTTTTTCACTCTTCTTGGAAAAACTTTGAAATGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGAGACGTTTTTCACTCTTCTTGGAAAAACTTTGAAATGTAAA  400

seq1  CTGTTTCGATTGATGGCTCCTTCTGGCCCTGGCAACTCTTTTTGGTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCGATTGATGGCTCCTTCTGGCCCTGGCAACTCTTTTTGGTAGCT  450

seq1  GGTGCTCTTTCTGTAATACTTGTTAAAAACGTCTCTGTAGCAAAGATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTTTCTGTAATACTTGTTAAAAACGTCTCTGTAGCAAAGATGTT  500

seq1  GTTTTTTATGTGATTTTTTTTTTTTAAGTCAGCGCATGTGTGAGTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTATGTGATTTTTTTTTTTTAAGTCAGCGCATGTGTGAGTACAGA  550

seq1  CAGGCTCTCATCTTGCACGGCGGAGACAGGCAGGTGAACACCTCCCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTCATCTTGCACGGCGGAGACAGGCAGGTGAACACCTCCCTCCC  600

seq1  GTAGTCCTTATTCATTTGCAATACTTTATATGATTAGCCTCTCAGAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCTTATTCATTTGCAATACTTTATATGATTAGCCTCTCAGAAAGC  650

seq1  TGTTTTCAGTCGAAACTGTCAATCCACTTCCAATGTGGCCCCTCTCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGTCGAAACTGTCAATCCACTTCCAATGTGGCCCCTCTCCCTG  700

seq1  GAAAGGAGGAGGCTGTGGCCACAAGCCCCTTTCTTAGCCTGGATACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGAGGCTGTGGCCACAAGCCCCTTTCTTAGCCTGGATACATTT  750

seq1  AATATGCCAGATAACCGCTAACCCTCCCATAGAAGGATTGCTGAGAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCCAGATAACCGCTAACCCTCCCATAGAAGGATTGCTGAGAATGT  800

seq1  TTTAAGGAAAGCTATACATG-TTTATCTTAAAGATCATATTTAGTATTTA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTAAGGAAAGCTATACATGTTTTATCTTAAAGATCATATTTAGTATTTA  850

seq1  AACCACATACACTTCCTCTAACCACCTACACAATTTTAATTGTTTTTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATACACTTCCTCTAACCACCTACACAATTTTAATTGTTTTTTCT  900

seq1  TTTAATAAAAATTCCATTTTAATCAGACATCTATGAAATGTCTATGTGCA  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTAATAAAAATTCCATTTT-ATCAGACATCTATGAAATGTCTATGTGCA  949

seq1  GGTGATGTTTAATATTCTGTTAATGGTTTCTAACTTCATTTTCGAAAAAT  999
       ||||   |||||| |||||||||||||| |||||||||||||| |||||
seq2  -GTGA--ATTAATA-TCTGTTAATGGTTT-TAACTTCATTTTCG-AAAAT  993

seq1  GCAGAAGGTAAAATTCATCATCCTGCTTAAAATAAGATCATCGTG  1044
      |||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGAAGGTAAAATTCATCATCCTGCTT-AAATAAGATCATCGTG  1037