BAC Information

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BAC

Clone NameB6Ng01-146L22
Chromosome13 (Build37)
Map Location 81,834,518 - 81,962,066
singlet/doubletdoublet
Overlap genePolr3g, 2900024O10Rik, Cetn3
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3
Downstream geneLOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146L22.bB6Ng01-146L22.g
ACCDH943805DH943806
length9011,170
definitionDH943805|Mus musculus domesticus DNA, BAC clone: B6Ng01-146L22, 5' end.DH943806|Mus musculus domesticus DNA, BAC clone: B6Ng01-146L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,834,518 - 81,835,418)(81,960,883 - 81,962,066)
sequence
gaattctcaatctattcagacattcaaaactacttccttagagctggaga
gatggctcagcagttaagagcactgactgcttttccaaaggtcctgagtt
caattcccagcaaccacatggtggctcacaaccatctgtaatagaatccg
aggctttcttctggtgtgtccgaaaaactacagtgtactcatataaatat
aataaataaatcttaaaaaaaaaaacaaaacctacttccttgagaaagta
tggtatactaaataacagaacccacaccccagggaagaaacacacaatta
aataaacaagggaggacaataaatttcaaatcatgaagacaaatataaaa
gaacagaagatgcgacatgagggtcaggtagtggttaatctacacagggt
aaaaatgcacagcctcctgcgtaagtcatatttgaacagagttatggaca
aaaaccaatcagctattcatgcaaagagagcagactattaaagataagaa
tccagcaggaacaaagacctgagagggcaaggggtccagcacagctgggg
cctgagaacccagcagtgagaaaaggctgagaagatgaggaagggcaggg
caggcacagccttctagcaataacttagtactattcccaaaagaaagtgg
tgctacgtgcttcctctcccagtgtttggagataatgccacaccttgtgg
tcttaatttgagggaagccactataaagagatattatgcatatggctgag
atatttgtctctgttttcaaggtatattgagtattaaaggtaaaatatga
agagcaaaaatgataataggatacaggtctctgaaggggaaaggggggac
ttcaactggggagaagaagggagagtgatacagagggagagggaggaagg
a
gaattctcagaagcaacttgggatacataatgagaccccatccaaaaaca
aaaaaacaaaaacaaaaacaaaaagaaaactgtctctttcctgtcattgc
cttataaatcacacccccttgtggtaataaaggtttatgacttaaccctt
catagttatctgccagatagtttctacaaacattgtgtagaaatttcatt
aaaagctaagtaaaataaagagggtggaaaacatgaaattttaaaagtgc
ttgcagcaaggaaaagcaaaaaggaataaaatcagcaaaattcaaactga
tgtaagttaaacaagtggccctttgcttatgatcagacgatgttctgaga
catgcatcatttggtgagtgctctcactgtgtgtgttactcatacaaccc
tagctgctgcaacaaactgcaaaccaggctgatctggaatgttcatggca
tagcctcttgcttctggaatgatgatgagagaacaatataaacttcagtc
aggaacagaaaaaacctatgcatgcattcaataaacaaaggaagaatagc
tgtacggagctgttgagtgtataatacatcaatttcccagggaaaatgtt
agcaagtaggagaacactctagaacaattaaaaaaaaggacagcagggca
cacagtaacttagcaaggatatgctgggagcacataatggtttgcaatgt
acttgtgtacactgctagtgcaggaggttttatttttacacctgttgtca
cctgtgaagaatgcattgtgctgtatcctttcagagcaactgtaatctta
tgagagcactgtcatatatatggcctgccatgggtcaatacatcttcgtg
cattttgtgagtgtaagttaacttacatttgaattgtttataagatgctc
ttatcactgaactcctcacactgaagtactacaggctttctactttactg
cccttgataaaaaaagatctaataatttctttttttttatacgtatttcc
tcattaacattttccatgctatcccaaagttccacacctcacttctaccc
accattccattttttgcctggcgttctctgtactgagcaataaagtttgc
ctgaccaatggcctccttttcattgtatgcgcactaggtcactctttggt
aaccatatatgcagcctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81834518_81835418
seq2: B6Ng01-146L22.b_46_946

seq1  GAATTCTCAATCTATTCAGACATTCAAAACTACTTCCTTAGAGCTGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATCTATTCAGACATTCAAAACTACTTCCTTAGAGCTGGAGA  50

seq1  GATGGCTCAGCAGTTAAGAGCACTGACTGCTTTTCCAAAGGTCCTGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGCAGTTAAGAGCACTGACTGCTTTTCCAAAGGTCCTGAGTT  100

seq1  CAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATAGAATCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATAGAATCCG  150

seq1  AGGCTTTCTTCTGGTGTGTCCGAAAAACTACAGTGTACTCATATAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCTTCTGGTGTGTCCGAAAAACTACAGTGTACTCATATAAATAT  200

seq1  AATAAATAAATCTTAAAAAAAAAAACAAAACCTACTTCCTTGAGAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATCTTAAAAAAAAAAACAAAACCTACTTCCTTGAGAAAGTA  250

seq1  TGGTATACTAAATAACAGAACCCACACCCCAGGGAAGAAACACACAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATACTAAATAACAGAACCCACACCCCAGGGAAGAAACACACAATTA  300

seq1  AATAAACAAGGGAGGACAATAAATTTCAAATCATGAAGACAAATATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAGGGAGGACAATAAATTTCAAATCATGAAGACAAATATAAAA  350

seq1  GAACAGAAGATGCGACATGAGGGTCAGGTAGTGGTTAATCTACACAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAGATGCGACATGAGGGTCAGGTAGTGGTTAATCTACACAGGGT  400

seq1  AAAAATGCACAGCCTCCTGCGTAAGTCATATTTGAACAGAGTTATGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCACAGCCTCCTGCGTAAGTCATATTTGAACAGAGTTATGGACA  450

seq1  AAAACCAATCAGCTATTCATGCAAAGAGAGCAGACTATTAAAGATAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAATCAGCTATTCATGCAAAGAGAGCAGACTATTAAAGATAAGAA  500

seq1  TCCAGCAGGAACAAAGACCTGAGAGGGCAAGGGGTCCAGCACAGCTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGGAACAAAGACCTGAGAGGGCAAGGGGTCCAGCACAGCTGGGG  550

seq1  CCTGAGAACCCAGCAGTGAGAAAAGGCTGAGAAGATGAGGAAGGGCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAACCCAGCAGTGAGAAAAGGCTGAGAAGATGAGGAAGGGCAGGG  600

seq1  CAGGCACAGCCTTCTAGCAATAACTTAGTACTATTCCCAAAAGAAAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACAGCCTTCTAGCAATAACTTAGTACTATTCCCAAAAGAAAGTGG  650

seq1  TGCTACGTGCTTCCTCTCCCAGTGTTTGGAGATAATGCCACACCTTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACGTGCTTCCTCTCCCAGTGTTTGGAGATAATGCCACACCTTGTGG  700

seq1  TCTTAATTTGAGGGAAGCCACTATAAAGAGATATTATGCATATGGCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTGAGGGAAGCCACTATAAAGAGATATTATGCATATGGCTGAG  750

seq1  ATATTTGTCTCTGTTTTCAAGGTATATTGAGTATTAAAGGTAAAATATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTCTCTGTTTTCAAGGTATATTGAGTATTAAAGGTAAAATATGA  800

seq1  AGAGCAAAAATGATAATAGGATACAGGTCTCTGAAGGGGAAAGGGGGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAAATGATAATAGGATACAGGTCTCTGAAGGGGAAAGGGGGGAC  850

seq1  TTCAACTGGGGAGAAGAAGGGAGAGTGATACAGAGGGAGAGGGAGGAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGGGGAGAAGAAGGGAGAGTGATACAGAGGGAGAGGGAGGAAGG  900

seq1  A  901
      |
seq2  A  901

seq1: chr13_81960883_81962066
seq2: B6Ng01-146L22.g_68_1237 (reverse)

seq1  TCTA-GCTGCATAT---GTATCAAAAGA-TGACCTAGTCGGCCATCAATG  45
      |||| |||||||||   ||  | ||||| |||||||||  ||   |||||
seq2  TCTAGGCTGCATATATGGTTACCAAAGAGTGACCTAGTGCGCATACAATG  50

seq1  GAAAGAGAGGCCCATTGGTCAGGCAAACTTTATATGCTCCAGTACAGAGG  95
       |||| |||| |||||||||||||||||||||| |||| ||||||||| |
seq2  AAAAG-GAGG-CCATTGGTCAGGCAAACTTTAT-TGCT-CAGTACAGA-G  95

seq1  AACGCCAGGGCCAAAAAATGGGAATGGGTGGGTAGGGGAGTGGGAGGGGT  145
      |||||||||  |||||||| ||||| ||||||||  | |||    | |||
seq2  AACGCCAGG--CAAAAAAT-GGAAT-GGTGGGTA--GAAGT----GAGGT  135

seq1  GTGGGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACGTA  195
      ||   |||  ||||||||||||| | |||||| | ||||| |||||||| 
seq2  GT---GGAACTTTGGGATAGCATGGAAAATGTTAATGAGG-AAATACGT-  180

seq1  ATAAAAAAAAAGAAATTATTAGATC-TGTTTTATCAAGGGCAGTAAAGTA  244
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  ATAAAAAAAAAGAAATTATTAGATCTTTTTTTATCAAGGGCAGTAAAGTA  230

seq1  GAAAGCCTGTAGTACTTCAGTGTGAGGAGTTCAGTGATAAGAGCATCTTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTGTAGTACTTCAGTGTGAGGAGTTCAGTGATAAGAGCATCTTA  280

seq1  TAAACAATTCAAATGTAAGTTAACTTACACTCACAAAATGCACGAAGATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTCAAATGTAAGTTAACTTACACTCACAAAATGCACGAAGATG  330

seq1  TATTGACCAATGGCAGGCCATATATATGACAGTGCTCTCATAAGATTACA  394
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACCCATGGCAGGCCATATATATGACAGTGCTCTCATAAGATTACA  380

seq1  GTTGCTCTGAAAGGATACAGCACAATGCATTCTTCACAGGTGACAACAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTGAAAGGATACAGCACAATGCATTCTTCACAGGTGACAACAGG  430

seq1  TGTAAAAATAAAACCTCCTGCACTAGCAGTGTACACAAGTACATTGCAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAATAAAACCTCCTGCACTAGCAGTGTACACAAGTACATTGCAAA  480

seq1  CCATTATGTGCTCCCAGCATATCCTTGCTAAGTTACTGTGTGCCCTGCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATGTGCTCCCAGCATATCCTTGCTAAGTTACTGTGTGCCCTGCTG  530

seq1  TCCTTTTTTTTAATTGTTCTAGAGTGTTCTCCTACTTGCTAACATTTTCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTTTAATTGTTCTAGAGTGTTCTCCTACTTGCTAACATTTTCC  580

seq1  CTGGGAAATTGATGTATTATACACTCAACAGCTCCGTACAGCTATTCTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAATTGATGTATTATACACTCAACAGCTCCGTACAGCTATTCTTC  630

seq1  CTTTGTTTATTGAATGCATGCATAGGTTTTTTCTGTTCCTGACTGAAGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTATTGAATGCATGCATAGGTTTTTTCTGTTCCTGACTGAAGTT  680

seq1  TATATTGTTCTCTCATCATCATTCCAGAAGCAAGAGGCTATGCCATGAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTTCTCTCATCATCATTCCAGAAGCAAGAGGCTATGCCATGAAC  730

seq1  ATTCCAGATCAGCCTGGTTTGCAGTTTGTTGCAGCAGCTAGGGTTGTATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGATCAGCCTGGTTTGCAGTTTGTTGCAGCAGCTAGGGTTGTATG  780

seq1  AGTAACACACACAGTGAGAGCACTCACCAAATGATGCATGTCTCAGAACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACACACACAGTGAGAGCACTCACCAAATGATGCATGTCTCAGAACA  830

seq1  TCGTCTGATCATAAGCAAAGGGCCACTTGTTTAACTTACATCAGTTTGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGATCATAAGCAAAGGGCCACTTGTTTAACTTACATCAGTTTGAA  880

seq1  TTTTGCTGATTTTATTCCTTTTTGCTTTTCCTTGCTGCAAGCACTTTTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGATTTTATTCCTTTTTGCTTTTCCTTGCTGCAAGCACTTTTAA  930

seq1  AATTTCATGTTTTCCACCCTCTTTATTTTACTTAGCTTTTAATGAAATTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATGTTTTCCACCCTCTTTATTTTACTTAGCTTTTAATGAAATTT  980

seq1  CTACACAATGTTTGTAGAAACTATCTGGCAGATAACTATGAAGGGTTAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAATGTTTGTAGAAACTATCTGGCAGATAACTATGAAGGGTTAAG  1030

seq1  TCATAAACCTTTATTACCACAAGGGGGTGTGATTTATAAGGCAATGACAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACCTTTATTACCACAAGGGGGTGTGATTTATAAGGCAATGACAG  1080

seq1  GAAAGAGACAGTTTTCTTTTTGTTTTTGTTTTTGTTTTTTTGTTTTTGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGACAGTTTTCTTTTTGTTTTTGTTTTTGTTTTTTTGTTTTTGGA  1130

seq1  TGGGGTCTCATTATGTATCCCAAGTTGCTTCTGAGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTCATTATGTATCCCAAGTTGCTTCTGAGAATTC  1170