BAC Information

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BAC

Clone NameB6Ng01-146O05
Chromosome13 (Build37)
Map Location 108,761,446 - 108,921,025
singlet/doubletdoublet
Overlap gene3021401N23Rik, 2810008M24Rik, Ndufa12l
Upstream geneKif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6
Downstream geneErcc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, Pde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146O05.bB6Ng01-146O05.g
ACCDH943915DH943916
length1,0291,097
definitionDH943915|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O05, 5' end.DH943916|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,761,446 - 108,762,479)(108,919,916 - 108,921,025)
sequence
gaattcaggaaggacttggctgctgcgtagtcacatgggtcttcacatag
atggtggtagttgtggaggaagattgccaccacctgaaggttcaaatggg
tctttgggccatccaagttgggctctgaaggggggccggtgggattgtgg
tggctggaaggggtaactgggtgaggaccagtagacgctcctaaatgatt
ccctctggtcaggcttcttaggcgctgaccaagcctcctccagagcaagc
atctctcagagaacacagaggaaccagcctccaggtcacagggtgtcata
ggtgtcacatcttagtcctcagcatcccatcttgacttgagaggatatca
gacagtgtgtgtggggccatgttttttcttagtatctccgagctaaatgt
cttcataatgtatataatttattcagctttctgcgacaagaggctccctg
aatagtgtgccttgctgcgtacttaggaagtaagggtgcttaaagagtca
gtgcacttttcaagtaaattataaggctcgacattggagttaactttaac
ctccacagctgtttgatgtaaataaagtcagctgcatctctcctccgtgc
agggaaaaggtaaaagaactggaaaataaataaataaataaacaaataaa
taaaaacaagagactccaatttccaggctcccaggagccaaggatccagg
ctcttgtgatgtggggctgtgggccatgcaacccagagaaagacatcaac
tctccatgagtgccttggggcagggcccgctgcctggaccccagctctcc
tgacactgccagctgctggcaagcacccctcgggcgctcttccgtgcgtg
gctctaatttcagtgattatttgtttccatcatgtgcagccgccatcaga
ctgggtttcgttcctggggataagcagttctgaaggttgtaacactcttc
aatggagcctgtctcaaacaccttcctggataattaccatggcccagtga
ctggggaatcactggagtgattttaaaca
gaattctgctgtccttcccagcagagacataatatacatatggctattat
ctaaatcgttggcttactctaattctcagcaaactagctgagactaaatt
aatatgtatgtataaagtcagttaaaatttattctcagattttctttttt
tctttcagtctagggcttatgatttccttttagaatataattaaggctgt
ttataatttccaaatttttatgttgtaccaagacaaaaatgcagacaatg
atactgtattaataatcttagtatgttacaaagaccgaatttgaatttct
ctgtttagagaaaccgtcttaattgcatattgacagttttaatatataat
ttttacttaatagagctggtattctttttcaaaagaataagtacaataag
aagaatgaatattgaaaaatgagttcagaagccgggcgtggtggcgcatg
cctttaatctcagcactcgggaagcagaggcaggcggatttctgagttcg
aggacagcctggtctacaaagtgagttccaggacagccagggctacacag
agaaaccctgtctcgaaaaaccaaaaacaaggaaggaaggaaggaaggaa
ggaaggaaggaaggaaggaaggaagaagagttcagaaagaactataaagt
attttacaaagggagggagactgcgtgaaaaattagtaaactaagtcaca
taatcacatttgacattgtcagttaagtattaatacattgtgccagtagt
tctgtgtctgtcagccaccttacaagagagacttcagcaatttggttaaa
cattttcaagctgtagaattactaagtcatgcaaacgagtacacactgtt
ggtgttgaagacatttaaacatggaagttgagaaaacattgaaatttgta
gagttggttttaaattttttatcacccctaggaaatggctgatacataaa
aacatgcttagtgcggttttgttcatttggaaacttcaagcttaattaga
ttttttcaggcactgatttatgtatgcaccatagttcttggatttaattt
tgttaatgtctttttgttcagtacataaagaaaaattcccttatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_108761446_108762479
seq2: B6Ng01-146O05.b_47_1075

seq1  GAATTCAGGAAGGACTTGGCTGCTGCGTAGTCACATGGGTCTTCACATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAGGACTTGGCTGCTGCGTAGTCACATGGGTCTTCACATAG  50

seq1  ATGGTGGTAGTTGTGGAGGAAGATTGCCACCACCTGAAGGTTCAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTAGTTGTGGAGGAAGATTGCCACCACCTGAAGGTTCAAATGGG  100

seq1  TCTTTGGGCCATCCAAGTTGGGCTCTGAAGGGGGGCCGGTGGGATTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGCCATCCAAGTTGGGCTCTGAAGGGGGGCCGGTGGGATTGTGG  150

seq1  TGGCTGGAAGGGGTAACTGGGTGAGGACCAGTAGACGCTCCTAAATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGAAGGGGTAACTGGGTGAGGACCAGTAGACGCTCCTAAATGATT  200

seq1  CCCTCTGGTCAGGCTTCTTAGGCGCTGACCAAGCCTCCTCCAGAGCAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGTCAGGCTTCTTAGGCGCTGACCAAGCCTCCTCCAGAGCAAGC  250

seq1  ATCTCTCAGAGAACACAGAGGAACCAGCCTCCAGGTCACAGGGTGTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCAGAGAACACAGAGGAACCAGCCTCCAGGTCACAGGGTGTCATA  300

seq1  GGTGTCACATCTTAGTCCTCAGCATCCCATCTTGACTTGAGAGGATATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCACATCTTAGTCCTCAGCATCCCATCTTGACTTGAGAGGATATCA  350

seq1  GACAGTGTGTGTGGGGCCATGTTTTTTCTTAGTATCTCCGAGCTAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTGTGTGGGGCCATGTTTTTTCTTAGTATCTCCGAGCTAAATGT  400

seq1  CTTCATAATGTATATAATTTATTCAGCTTTCTGCGACAAGAGGCTCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAATGTATATAATTTATTCAGCTTTCTGCGACAAGAGGCTCCCTG  450

seq1  AATAGTGTGCCTTGCTGCGTACTTAGGAAGTAAGGGTGCTTAAAGAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTGCCTTGCTGCGTACTTAGGAAGTAAGGGTGCTTAAAGAGTCA  500

seq1  GTGCACTTTTCAAGTAAATTATAAGGCTCGACATTGGAGTTAACTTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTTTTCAAGTAAATTATAAGGCTCGACATTGGAGTTAACTTTAAC  550

seq1  CTCCACAGCTGTTTGATGTAAATAAAGTCAGCTGCATCTCTCCTCCGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGCTGTTTGATGTAAATAAAGTCAGCTGCATCTCTCCTCCGTGC  600

seq1  AGGGAAAAGGTAAAAGAACTGGAAAATAAATAAATAAATAAACAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGGTAAAAGAACTGGAAAATAAATAAATAAATAAACAAATAAA  650

seq1  TAAAAACAAGAGACTCCAATTTCCAGGCTCCCAGGAGCCAAGGATCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAGAGACTCCAATTTCCAGGCTCCCAGGAGCCAAGGATCCAGG  700

seq1  CTCTTGTGATGTGGGGCTGTGGGCCATGCAACCCAGAGAAAGACATCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGATGTGGGGCTGTGGGCCATGCAACCCAGAGAAAGACATCAAC  750

seq1  TCTCCATGAGTGCCTTGGGGCAGGGCCCGCTGCCTGGACCCCAGCTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGAGTGCCTTGGGGCAGGGCCCGCTGCCTGGACCCCAGCTCTCC  800

seq1  TGACACTGCCAGCTGCTGGCAAGCACCCCTCGGGCGCTCTTCCGTGCGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGCCAGCTGCTGGCAAGCACCCCTCGGGCGCTCTTCCGTGCGTG  850

seq1  GCTCTAATTTCAGTGATTATTTGTTTCCATCATGTGCAGCCGCCATCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATTTCAGTGATTATTTGTTTCCATCATGTGCAGCCGCCATCAGA  900

seq1  CTGGTTTTCGTTCCTGGGGATTAAGCAGTTTCTGAAGGTTGTTATCACTC  950
      |||| ||||||||||||||| ||||||| |||||||||||| || |||||
seq2  CTGGGTTTCGTTCCTGGGGA-TAAGCAG-TTCTGAAGGTTG-TAACACTC  947

seq1  TTTCAATGGAGCATGTCTTCAAACACCTTCCTGGATAATTACCATGGCCC  1000
       ||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  -TTCAATGGAGCCTGTC-TCAAACACCTTCCTGGATAATTACCATGGCCC  995

seq1  AGTGACTGGGGAATCACTGGAGTGATTTTAAACA  1034
      ||||||||||||||||||||||||||||||||||
seq2  AGTGACTGGGGAATCACTGGAGTGATTTTAAACA  1029

seq1: chr13_108919916_108921025
seq2: B6Ng01-146O05.g_67_1163 (reverse)

seq1  TATAAAGGGAAATTTTTCTTTTTATGTACCTTTGAAC-AAAAGACATTAA  49
      |||| | || ||||||||  |||||||||   ||||| |||||||||| |
seq2  TATATAAGGGAATTTTTC--TTTATGTAC---TGAACAAAAAGACATT-A  44

seq1  ACAAAATTAAAATCCAAAGGAAACTATGGTGCATACATAAATTAAGTGCC  99
      |||||||| ||||||||    |||||||||||||||||||| | ||||||
seq2  ACAAAATT-AAATCCAA---GAACTATGGTGCATACATAAA-TCAGTGCC  89

seq1  TGGAAAAAAATCTAATTAAGCTTGAAGGTTTCCAAATGAACAAAACCGCA  149
      ||  |||||||||||||||||||||| |||||||||||||||||||||||
seq2  TG--AAAAAATCTAATTAAGCTTGAA-GTTTCCAAATGAACAAAACCGCA  136

seq1  CTAAGCATGTTTTTATGTATCAGCCATTTCCTAGGGGTGATTAAAAAATT  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAAGCATGTTTTTATGTATCAGCCATTTCCTAGGGGTGA-TAAAAAATT  185

seq1  TAAAACCAACTCTACAAATTTCAATGTTTTCTCAACTTCCATGTTTAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAACTCTACAAATTTCAATGTTTTCTCAACTTCCATGTTTAAAT  235

seq1  GTCTTCAACACCAACAGTGTGTACTCGTTTGCATGACTTAGTAATTCTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAACACCAACAGTGTGTACTCGTTTGCATGACTTAGTAATTCTAC  285

seq1  AGCTTGAAAATGTTTAACCAAATTGCTGAAGTCTCTCTTGTAAGGTGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAAAATGTTTAACCAAATTGCTGAAGTCTCTCTTGTAAGGTGGCT  335

seq1  GACAGACACAGAACTACTGGCACAATGTATTAATACTTAACTGACAATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACACAGAACTACTGGCACAATGTATTAATACTTAACTGACAATGT  385

seq1  C-AATGTGATTATGTGACTTAGTTTACTAATTTTTCACGCAGTCTCCCTC  448
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGATTATGTGACTTAGTTTACTAATTTTTCACGCAGTCTCCCTC  435

seq1  CCTTTGTAAAATACTTTATAGTTCTTTCTGAACTCTTCTTCCTTCCTTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTAAAATACTTTATAGTTCTTTCTGAACTCTTCTTCCTTCCTTCC  485

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTGTTTTTGGTTTTTCGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTGTTTTTGGTTTTTCGA  535

seq1  GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGA  585

seq1  CCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCTTCCCGAGTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCTTCCCGAGTGC  635

seq1  TGAGATTAAAGGCATGCGCCACCACGCCCGGCTTCTGAACTCATTTTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAAAGGCATGCGCCACCACGCCCGGCTTCTGAACTCATTTTTCA  685

seq1  ATATTCATTCTTCTTATTGTACTTATTCTTTTGAAAAAGAATACCAGCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTCTTCTTATTGTACTTATTCTTTTGAAAAAGAATACCAGCTC  735

seq1  TATTAAGTAAAAATTATATATTAAAACTGTCAATATGCAATTAAGACGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTAAAAATTATATATTAAAACTGTCAATATGCAATTAAGACGGT  785

seq1  TTCTCTAAACAGAGAAATTCAAATTCGGTCTTTGTAACATACTAAGATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAACAGAGAAATTCAAATTCGGTCTTTGTAACATACTAAGATTA  835

seq1  TTAATACAGTATCATTGTCTGCATTTTTGTCTTGGTACAACATAAAAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACAGTATCATTGTCTGCATTTTTGTCTTGGTACAACATAAAAATT  885

seq1  TGGAAATTATAAACAGCCTTAATTATATTCTAAAAGGAAATCATAAGCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTATAAACAGCCTTAATTATATTCTAAAAGGAAATCATAAGCCC  935

seq1  TAGACTGAAAGAAAAAAAGAAAATCTGAGAATAAATTTTAACTGACTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGAAAGAAAAAAAGAAAATCTGAGAATAAATTTTAACTGACTTTA  985

seq1  TACATACATATTAATTTAGTCTCAGCTAGTTTGCTGAGAATTAGAGTAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATATTAATTTAGTCTCAGCTAGTTTGCTGAGAATTAGAGTAAG  1035

seq1  CCAACGATTTAGATAATAGCCATATGTATATTATGTCTCTGCTGGGAAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGATTTAGATAATAGCCATATGTATATTATGTCTCTGCTGGGAAGG  1085

seq1  ACAGCAGAATTC  1110
      ||||||||||||
seq2  ACAGCAGAATTC  1097