BAC Information

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BAC

Clone NameB6Ng01-147A01
Chromosome13 (Build37)
Map Location 15,708,344 - 15,855,450
singlet/doubletdoublet
Overlap geneGli3
Upstream genePsma2, AW209491, EG665099, LOC670994, EG625121
Downstream geneLOC665157, Inhba, LOC625181, LOC665191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147A01.bB6Ng01-147A01.g
ACCDH944001DH944002
length1,1021,164
definitionDH944001|Mus musculus domesticus DNA, BAC clone: B6Ng01-147A01, 5' end.DH944002|Mus musculus domesticus DNA, BAC clone: B6Ng01-147A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,708,344 - 15,709,460)(15,854,288 - 15,855,450)
sequence
gaattccaagatgtttgctgtataattgcctcctagaaaatgaaatcaag
tgagcttactaagcttttagagtgaatattttaattacaggaagataaaa
cttggcgatattctcattattttgtaaacacaattgttcttctggtgcca
actttagaaactaaattataagtctctgaaaaacaagggcctgtgttgat
ggaaatgctgacagaccagtgttcagaaggatagcaggcactgcggtaat
tatgctatcatattccatcattagagattctattgaaaaggtttataaat
tgctcctctttttagataaaccaccctatattaaggcatcaatgatacgg
tgcagaattaaattaaaatctcataaaatgaaatatgttctgtattagct
gtttgacacttaatttgcctctgaatgagtagaggaaatcacaaattaac
ctgcttttgtttttccaaccgtggcttattaggtgttagaacaactgcaa
ttatagcccaataataacccaggagccttataaatatgtacggaaatatg
taagcctgtgtttaaaaactaggtttgttacatgaaatgcctttagttac
actccttgcttgcacactgttgtccacagtttatggttgagcaaagcagc
tcgaggatagacatttaaatgaactaaaatacagtactagaaataatcct
aggatttattgaaatttcttttagcccaaaatcatgaaattaattttaaa
aagtcataagtgggtcatgccataggtgccatgtctctaggttgtcacat
caaactgctctctgaaatggacaatgactgcatcatgtttatgtcattca
aatagtttcttgaacattgaatatgagaattctttcctcatcttatgagt
tgttcagaatgcatgtgtccactgatacctggaatgtctcttctcagtgt
aataatccccattctatgtaaagttaacacagtgttttagaaaaatcaca
agtcacttagcatatgctgagcccatctggtgctctgtgatatccttgag
ccgaaacacattgcagaagagaacggaaacgttttcagtctctctttgtt
cc
gaattctgtggagcacagccaggataggtgactggcacaatgcccaatca
tatgacaacaatgtctacaaaacccctgagaagggggactttaatgacat
atgaatctgtatggcttttaatctcaactcaagtcggttctttggttcac
tgcaaaagaagccggggagcagataatagagtggaagaaaaaagcaatct
atttctctttttctgtgactttcccccctgtgggtctgtgtggccaacaa
gtgtgcaagaacattggtaaacaagaagactggttctagtcactattagg
aagtacacttgtaagctcacatacccgggaaggaggtaatgcagcttcag
aaacatcttgccttgtggggccctaacgctgcagcttgggtgaaataagc
acttatgaacaccagggggcaatgtgtaatcaccattcccatcctcctcc
cttagcaacttggaaatgaaatctcccctcctctcctcgacccccaataa
aacaaatctcttcattgtttttatgccttggtttttggaccctctctcat
aagacttcattcaagagatgaaaccgaaatcaatgaagtaagtggctgta
taagtctaagcgcttcttagtaacaagagactattttatttgctgcatgg
atgatagatagcgaagaatcaaagaatagcaggtctctaaccatcaatgg
acaaggagcacccaacagcactgagtcctgtctggaatactccgttacat
ttccattgtttccaccgtgactttccctttcacctaagggtaagtatttc
agttttaagaattgaattgagtgttccagtctcagtccggaaccacatcc
acattcactctagctgagtctcacacagattttcaccttataccaagctc
agctagggagcctaacgcttccactctcctagatccagggccctcatccc
atgcaccgccacaggcccagacgagctaggagtcacagccacacactctc
tgcgtgactctctttcagcacactccctatccttgcagtctccccaagtc
caaatcagctgtagcacatttcttaagcttactccatgagtaagcctggc
ccctttccttagcttactttcagagaccagctagaagccacacatgggag
aattgggaagcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_15708344_15709460
seq2: B6Ng01-147A01.b_45_1146

seq1  GAATTCCAAGATGTTTGCTGTATAATTGCCTCCTAGAAAATGAAATCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGATGTTTGCTGTATAATTGCCTCCTAGAAAATGAAATCAAG  50

seq1  TGAGCTTACTAAGCTTTTAGAGTGAATATTTTAATTACAGGAAGATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTACTAAGCTTTTAGAGTGAATATTTTAATTACAGGAAGATAAAA  100

seq1  CTTGGCGATATTCTCATTATTTTGTAAACACAATTGTTCTTCTGGTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCGATATTCTCATTATTTTGTAAACACAATTGTTCTTCTGGTGCCA  150

seq1  ACTTTAGAAACTAAATTATAAGTCTCTGAAAAACAAGGGCCTGTGTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGAAACTAAATTATAAGTCTCTGAAAAACAAGGGCCTGTGTTGAT  200

seq1  GGAAATGCTGACAGACCAGTGTTCAGAAGGATAGCAGGCACTGCGGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCTGACAGACCAGTGTTCAGAAGGATAGCAGGCACTGCGGTAAT  250

seq1  TATGCTATCATATTCCATCATTAGAGATTCTATTGAAAAGGTTTATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTATCATATTCCATCATTAGAGATTCTATTGAAAAGGTTTATAAAT  300

seq1  TGCTCCTCTTTTTAGATAAACCACCCTATATTAAGGCATCAATGATACGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCTTTTTAGATAAACCACCCTATATTAAGGCATCAATGATACGG  350

seq1  TGCAGAATTAAATTAAAATCTCATAAAATGAAATATGTTCTGTATTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATTAAATTAAAATCTCATAAAATGAAATATGTTCTGTATTAGCT  400

seq1  GTTTGACACTTAATTTGCCTCTGAATGAGTAGAGGAAATCACAAATTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACACTTAATTTGCCTCTGAATGAGTAGAGGAAATCACAAATTAAC  450

seq1  CTGCTTTTGTTTTTCCAACCGTGGCTTATTAGGTGTTAGAACAACTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTGTTTTTCCAACCGTGGCTTATTAGGTGTTAGAACAACTGCAA  500

seq1  TTATAGCCCAATAATAACCCAGGAGCCTTATAAATATGTACGGAAATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCCCAATAATAACCCAGGAGCCTTATAAATATGTACGGAAATATG  550

seq1  TAAGCCTGTGTTTAAAAACTAGGTTTGTTACATGAAATGCCTTTAGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGTGTTTAAAAACTAGGTTTGTTACATGAAATGCCTTTAGTTAC  600

seq1  ACTCCTTGCTTGCACACTGTTGTCCACAGTTTATGGTTGAGCAAAGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGCTTGCACACTGTTGTCCACAGTTTATGGTTGAGCAAAGCAGC  650

seq1  TCGAGGATAGACATTTAAATGAACTAAAATACAGTACTAGAAATAATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGATAGACATTTAAATGAACTAAAATACAGTACTAGAAATAATCCT  700

seq1  AGGATTTATTGAAATTTCTTTTAGCCCAAAATCATGAAATTAATTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTATTGAAATTTCTTTTAGCCCAAAATCATGAAATTAATTTTAAA  750

seq1  AGGTCATAAGTGGGTCATGCCATAGGTGCCATGTCTCTAGGTTGTCACAT  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATAAGTGGGTCATGCCATAGGTGCCATGTCTCTAGGTTGTCACAT  800

seq1  CAAACTGCTCTCTGAAATGGACAATGACTGCATCATGTTTATGTCATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCTCTCTGAAATGGACAATGACTGCATCATGTTTATGTCATTCA  850

seq1  AATAGTTTCTTGAACATTGAATATGAGAATTCTTTCCTCATCTTATGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTCTTGAACATTGAATATGAGAATTCTTTCCTCATCTTATGAGT  900

seq1  TGTTCAGAATGCATGTGTCCAACTGATACCTGGAATGTCTCTTTCTCAGG  950
      |||||||||||||||||||| |||||||||||||||||||| ||||||| 
seq2  TGTTCAGAATGCATGTGTCC-ACTGATACCTGGAATGTCTC-TTCTCAG-  947

seq1  TTGTAATAATCCCCAATTCTATGTAAAGTTAAACACAGTGTTTTAGAAAA  1000
       ||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  -TGTAATAATCCCC-ATTCTATGTAAAGTT-AACACAGTGTTTTAGAAAA  994

seq1  ATCACCAAAGTCCACTTAGCATATTGCTGAGCCCATCTGGTGCCTCTGTG  1050
      |||||  |||| ||||||||||| |||||||||||||||||| |||||||
seq2  ATCAC--AAGT-CACTTAGCATA-TGCTGAGCCCATCTGGTG-CTCTGTG  1039

seq1  ATATCCCTGAGCCCGGACACACACTGCAGAAGAGAACGGGAAACGTGTCC  1100
      |||||| ||||||  || ||||| ||||||||||||| |||||||| | |
seq2  ATATCCTTGAGCC--GAAACACATTGCAGAAGAGAAC-GGAAACGTTTTC  1086

seq1  AGTCCTCTCTTTGTTCC  1117
      ||| |||||||||||||
seq2  AGT-CTCTCTTTGTTCC  1102

seq1: chr13_15854288_15855450
seq2: B6Ng01-147A01.g_69_1232 (reverse)

seq1  AAAGCCTCCCA--TCTCCCA-GTGTGGCTTCTAGCTGG-GTCTGGAAGTT  46
      ||||| |||||  ||||||| |||||||||||||||||  |||| |||| 
seq2  AAAGCTTCCCAATTCTCCCATGTGTGGCTTCTAGCTGGTCTCTGAAAGTA  50

seq1  AGCTAAGGACAAGGGGCCAGGCTGACTCATGGAGTAAGCATAAG-AATGT  95
      ||||||||| ||||||||||||| ||||||||||||||| |||| |||||
seq2  AGCTAAGGA-AAGGGGCCAGGCTTACTCATGGAGTAAGCTTAAGAAATGT  99

seq1  GGCTTACAGCTGGATTTGGACCTGGGGAGACTGCAAGGATAGGGAGTGTG  145
      |   ||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  G--CTACAGCT-GATTTGGACTTGGGGAGACTGCAAGGATAGGGAGTGTG  146

seq1  CTGAAAGAGAGTCACGCAGAGAGTGTGTGGCTGTGACTCCTAGCTCGTCT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAGAGTCACGCAGAGAGTGTGTGGCTGTGACTCCTAGCTCGTCT  196

seq1  GGGCCTGTGGCGGTTGCATGGGATGAGGGCCCTGGATCTAGGAGAGTGGA  245
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGTGGCGG-TGCATGGGATGAGGGCCCTGGATCTAGGAGAGTGGA  245

seq1  AGCGTTAGGCT-CCTAGCTGAGCTTGGTATAAGGTGAAAATCTGTGTGAG  294
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTAGGCTCCCTAGCTGAGCTTGGTATAAGGTGAAAATCTGTGTGAG  295

seq1  ACTCAGCTAGAGTGAATGTGGATGTGGTTCCGGACTGAGACTGGAACACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTAGAGTGAATGTGGATGTGGTTCCGGACTGAGACTGGAACACT  345

seq1  CAATTCAATTCTTAAAACTGAAATACTTACCCTTAGGTGAAAGGGAAAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATTCTTAAAACTGAAATACTTACCCTTAGGTGAAAGGGAAAGT  395

seq1  CACGGTGGAAACAATGGAAATGTAACGGAGTATTCCAGACAGGACTCAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGGAAACAATGGAAATGTAACGGAGTATTCCAGACAGGACTCAGT  445

seq1  GCTGTTGGGTGCTCCTTGTCCATTGATGGTTAGAGACCTGCTATTCTTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGGTGCTCCTTGTCCATTGATGGTTAGAGACCTGCTATTCTTTG  495

seq1  ATTCTTCGCTATCTATCATCCATGCAGCAAATAAAATAGTCTCTTGTTAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCGCTATCTATCATCCATGCAGCAAATAAAATAGTCTCTTGTTAC  545

seq1  TAAGAAGCGCTTAGACTTATACAGCCACTTACTTCATTGATTTCGGTTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCGCTTAGACTTATACAGCCACTTACTTCATTGATTTCGGTTTC  595

seq1  ATCTCTTGAATGAAGTCTTATGAGAGAGGGTCCAAAAACCAAGGCATAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGAATGAAGTCTTATGAGAGAGGGTCCAAAAACCAAGGCATAAA  645

seq1  AACAATGAAGAGATTTGTTTTATTGGGGGTCGAGGAGAGGAGGGGAGATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAAGAGATTTGTTTTATTGGGGGTCGAGGAGAGGAGGGGAGATT  695

seq1  TCATTTCCAAGTTGCTAAGGGAGGAGGATGGGAATGGTGATTACACATTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCAAGTTGCTAAGGGAGGAGGATGGGAATGGTGATTACACATTG  745

seq1  CCCCCTGGTGTTCATAAGTGCTTATTTCACCCAAGCTGCAGCGTTAGGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGGTGTTCATAAGTGCTTATTTCACCCAAGCTGCAGCGTTAGGGC  795

seq1  CCCACAAGGCAAGATGTTTCTGAAGCTGCATTACCTCCTTCCCGGGTATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGGCAAGATGTTTCTGAAGCTGCATTACCTCCTTCCCGGGTATG  845

seq1  TGAGCTTACAAGTGTACTTCCTAATAGTGACTAGAACCAGTCTTCTTGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTACAAGTGTACTTCCTAATAGTGACTAGAACCAGTCTTCTTGTT  895

seq1  TACCAATGTTCTTGCACACTTGTTGGCCACACAGACCCACAGGGGGGAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATGTTCTTGCACACTTGTTGGCCACACAGACCCACAGGGGGGAAA  945

seq1  GTCACAGAAAAAGAGAAATAGATTGCTTTTTTCTTCCACTCTATTATCTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAAAAAGAGAAATAGATTGCTTTTTTCTTCCACTCTATTATCTG  995

seq1  CTCCCCGGCTTCTTTTGCAGTGAACCAAAGAACCGACTTGAGTTGAGATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCGGCTTCTTTTGCAGTGAACCAAAGAACCGACTTGAGTTGAGATT  1045

seq1  AAAAGCCATACAGATTCATATGTCATTAAAGTCCCCCTTCTCAGGGGTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATACAGATTCATATGTCATTAAAGTCCCCCTTCTCAGGGGTTT  1095

seq1  TGTAGACATTGTTGTCATATGATTGGGCATTGTGCCAGTCACCTATCCTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACATTGTTGTCATATGATTGGGCATTGTGCCAGTCACCTATCCTG  1145

seq1  GCTGTGCTCCACAGAATTC  1163
      |||||||||||||||||||
seq2  GCTGTGCTCCACAGAATTC  1164