BAC Information

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BAC

Clone NameB6Ng01-147A15
Chromosome13 (Build37)
Map Location 51,764,782 - 51,924,492
singlet/doubletdoublet
Overlap geneSecisbp2, Sema4d
Upstream geneLOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2
Downstream geneGadd45g, LOC100040321, Diras2, LOC100040572, Syk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147A15.bB6Ng01-147A15.g
ACCDH944026DH944027
length952741
definitionDH944026|Mus musculus domesticus DNA, BAC clone: B6Ng01-147A15, 5' end.DH944027|Mus musculus domesticus DNA, BAC clone: B6Ng01-147A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,923,536 - 51,924,492)(51,764,782 - 51,765,516)
sequence
gaattcagttagcagctcgttgatcacttcatagttccatgaagttagct
ggaaaattaattctctaaaagggaacgttgcccatgattgtgaatgtttg
ctcaaaattacgtttgtctgacatggacgtaatgtttgctgtttgctaca
atgtagcaagtacaggaagtacaggtagcaagtacaggaagtacaggaag
gtgctgttgtgccagtggacaatgaatgaaagcagtttccttatttgtct
tgagtcctttttgaattccaaaagcttgttgaatttaaaaaaaaaaaaaa
gcattgttacaatgtaattgaaaaaaatgttgctcttaacagcagcaaca
agaacacgctcaacccgaacctcaaaacagagagggggtcatgcagatgg
attgaatgaggtcagaggccaaggtgaatgaacccagccgccttgcttcc
tccgtttgccttcagctcagtcacaatcacccagggttgcctttagaagg
tcaaggggtaaaatgtatgggaccttttcttttcttttcttttcttttct
tttcttttcttttcttttctttctttctctctctctttctttctttttct
ctctcttttttaagatttatttatttattttatttatgtgagtacactgt
agctgtcttcagacacaccagaagagggcatcagatatcattacagatgg
ttgtgagccaccatgtggttgctgagaattgaattcaggacctctggaag
agcagtcaatgctcttaactgctgagccatttctccagccccaccccacc
cccaaatgtatctctctactgacgtgttcctgtgcatggccacggcctct
gcacttcacagtgtcatgtgctctctgtgctttgaatcctataaagcaca
ttattattattattattagggttttttttttttccagaacgggtttttct
gt
gaattcagaaatccacctgcctctgcctcctgagtgctgggattaaagat
atgcgccaccatgcccagcaggggttgaaattttaatatgtaaatatttg
taaaggctgtgggacttttaaagttatttagatcttggggatgaataagg
aagtaaaggcttaatagtggggtgtatgtgtgtgtcaaattgaccagagg
ccagttatactggctgcttttgtgtgtcaacttgacacaagctggagtta
acacagagaaaggagcctcccttgaggaaatgcctccatgagatccagct
gtaaggcattttctcaattagtgatcaaggggggagggcccactgtgggt
ggtgctgtccctgggctggaagtcttggttctataagaaagcaagctgag
caaggcaggggaagcaagccagtaagtaccatccatgatgttgtgtgtga
ccttaagtcactgagtttaagtttatgtttgcatcctccctccgttgggg
tcggagaatcagcccaggtctggcacatgcactgccatcaagtcacaacc
cagacctttatataattaaacaagcaagccataatttgacatttttacaa
tgctttaaaatctggactttgtataactaccaagcatttttgctcctgct
gtggaactctgctaggatagagcagtccataaaagcgtcctattgcttat
agagctctggtgatggggaaaaaggatgaaaggattgcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_51923536_51924492
seq2: B6Ng01-147A15.b_47_998 (reverse)

seq1  ACAGAAAAACCCGGTCTCGAAAAAAAAAAAACCCTAATAATAATAATAAT  50
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  ACAGAAAAACCCGTTCTGGAAAAAAAAAAAACCCTAATAATAATAATAAT  50

seq1  AATGTGCTTTATAGGATTCAAAGCACAGAGAGCACATGACACTGTGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATGTGCTTTATAGGATTCAAAGCACAGAGAGCACATGACACTGTGAAGT  100

seq1  GCAGAGGCCGTGGCCATGCACAGGAACACGTCAGTAGAGAGATACATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCCGTGGCCATGCACAGGAACACGTCAGTAGAGAGATACATTTG  150

seq1  GGGGTGGGGTGGGGCTGGAGAAATGGCTCAGCAGTTAAGAGCATTGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGTGGGGCTGGAGAAATGGCTCAGCAGTTAAGAGCATTGACTG  200

seq1  CTCTTCCAGAGGTCCTGAATTCAATTCTCAGCAACCACATGGTGGCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAGGTCCTGAATTCAATTCTCAGCAACCACATGGTGGCTCAC  250

seq1  AACCATCTGTAATGATATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTGTAATGATATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAG  300

seq1  CTACAGTGTACTCACATAAATAAAATAAATAAATAAATCTTAAAAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGTACTCACATAAATAAAATAAATAAATAAATCTTAAAAAAGAG  350

seq1  AGAGAAAAAGAAAGAAAGAGAGAGAGAAAGAAAGAAAAGAAAAGAAAAGA  400
      ||||||||||||||||||||||||||||||     |||||||||||||||
seq2  AGAGAAAAAGAAAGAAAGAGAGAGAGAAAG-----AAAGAAAAGAAAAGA  395

seq1  AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGGCCCCATACATTTTAC  450
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGGTCCCATACATTTTAC  445

seq1  CCCTTGACCTTCTAAAGGCAACCCTGGGTGATTGTGACTGAGCTGAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGACCTTCTAAAGGCAACCCTGGGTGATTGTGACTGAGCTGAAGGC  495

seq1  AAACGGAGGAAGCAAGGCGGCTGGGTTCATTCACCTTGGCCTCTGACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGAGGAAGCAAGGCGGCTGGGTTCATTCACCTTGGCCTCTGACCTC  545

seq1  ATTCAATCCATCTGCATGACCCCCTCTCTGTTTTGAGGTTCGGGTTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATCCATCTGCATGACCCCCTCTCTGTTTTGAGGTTCGGGTTGAGC  595

seq1  GTGTTCTTGTTGCTGCTGTTAAGAGCAACATTTTTTTCAATTACATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGTTGCTGCTGTTAAGAGCAACATTTTTTTCAATTACATTGTA  645

seq1  ACAATGCTTTTTTTTTTTTTTAAATTCAACAAGCTTTTGGAATTCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTTTTTTTTTTTTTTAAATTCAACAAGCTTTTGGAATTCAAAAA  695

seq1  GGACTCAAGACAAATAAGGAAACTGCTTTCATTCATTGTCCACTGGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAGACAAATAAGGAAACTGCTTTCATTCATTGTCCACTGGCACA  745

seq1  ACAGCACCTTCCTGTACTTCCTGTACTTGCTACCTGTACTTCCTGTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCTTCCTGTACTTCCTGTACTTGCTACCTGTACTTCCTGTACTT  795

seq1  GCTACATTGTAGCAAACAGCAAACATTACGTCCATGTCAGACAAACGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATTGTAGCAAACAGCAAACATTACGTCCATGTCAGACAAACGTAA  845

seq1  TTTTGAGCAAACATTCACAATCATGGGCAACGTTCCCTTTTAGAGAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGCAAACATTCACAATCATGGGCAACGTTCCCTTTTAGAGAATTA  895

seq1  ATTTTCCAGCTAACTTCATGGAACAATGAAGTGATCAACGAGCTGCTAAC  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTTTCCAGCTAACTTCATGGAACTATGAAGTGATCAACGAGCTGCTAAC  945

seq1  TGAATTC  957
      |||||||
seq2  TGAATTC  952

seq1: chr13_51764782_51765516
seq2: B6Ng01-147A15.g_71_811

seq1  GAATTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGAT  50

seq1  ATGCGCCACCATGCCCAGCAGGGGTTGAAATTTTAATATGTAAATATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCACCATGCCCAGCAGGGGTTGAAATTTTAATATGTAAATATTTG  100

seq1  TAAAGGCTGTGGGACTTTTAAAGTTATTTAGATCTTGGGGATGAATAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCTGTGGGACTTTTAAAGTTATTTAGATCTTGGGGATGAATAAGG  150

seq1  AAGTAAAGGCTTAATAGTGGGGTGTATGTGTGTGTCAAATTGACCAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGGCTTAATAGTGGGGTGTATGTGTGTGTCAAATTGACCAGAGG  200

seq1  CCAGTTATACTGGCTGCTTTTGTGTGTCAACTTGACACAAGCTGGAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATACTGGCTGCTTTTGTGTGTCAACTTGACACAAGCTGGAGTTA  250

seq1  ACACAGAGAAAGGAGCCTCCCTTGAGGAAATGCCTCCATGAGATCCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAAGGAGCCTCCCTTGAGGAAATGCCTCCATGAGATCCAGCT  300

seq1  GTAAGGCATTTTCTCAATTAGTGATCAAGGGGGGAGGGCCCACTGTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCATTTTCTCAATTAGTGATCAAGGGGGGAGGGCCCACTGTGGGT  350

seq1  GGTGCTGTCCCTGGGCTGGAAGTCTTGGTTCTATAAGAAAGCAAGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTCCCTGGGCTGGAAGTCTTGGTTCTATAAGAAAGCAAGCTGAG  400

seq1  CAAGGCAGGGGAAGCAAGCCAGTAAGTACCATCCATGATGTTGTGTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGGGAAGCAAGCCAGTAAGTACCATCCATGATGTTGTGTGTGA  450

seq1  CCTTAAGTCACTGAGTTTAAGTTTATGTTTGCATCCTCCCTCCGTTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGTCACTGAGTTTAAGTTTATGTTTGCATCCTCCCTCCGTTGGGG  500

seq1  TCGGAGAATCAGCCCAGGTCTGGCACATGCACTGCCATCAAGTCACAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGAATCAGCCCAGGTCTGGCACATGCACTGCCATCAAGTCACAACC  550

seq1  CAGACCTTTATATAATTAAACAAGCAAGCCATAA-TTGACATTTTTACAA  599
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGACCTTTATATAATTAAACAAGCAAGCCATAATTTGACATTTTTACAA  600

seq1  TGCTTTAAAAGCTGGACTTTGTATAACTACCAAGCA-TTTTGCTCCTGCT  648
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TGCTTTAAAATCTGGACTTTGTATAACTACCAAGCATTTTTGCTCCTGCT  650

seq1  G-GGAACTCTGCTAGGATAGAGCAGTTCCAT-AAAGCGTCCTAGTGCTGA  696
      | ||||||||||||||||||||||| ||||| ||||||||||| |||| |
seq2  GTGGAACTCTGCTAGGATAGAGCAG-TCCATAAAAGCGTCCTATTGCTTA  699

seq1  TAGAGCTCAGGTGATGGG--AAAAGGATGAAAGGA-TGCACT  735
      |||||||| |||||||||  ||||||||||||||| ||||||
seq2  TAGAGCTCTGGTGATGGGGAAAAAGGATGAAAGGATTGCACT  741