BAC Information

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BAC

Clone NameB6Ng01-147D17
Chromosome13 (Build37)18 (Build37)
Map Location 4,223,381 - 4,224,00453,894,317 - 53,894,712
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13
Downstream geneAkr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147D17.bB6Ng01-147D17.g
ACCDH944171DH944172
length624408
definitionDH944171|Mus musculus domesticus DNA, BAC clone: B6Ng01-147D17, 5' end.DH944172|Mus musculus domesticus DNA, BAC clone: B6Ng01-147D17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,223,381 - 4,224,004)(53,894,317 - 53,894,712)
sequence
gaattccccaacatttgagagtgatgcaatgtgattctctatagcccagg
tccagcaccgacagcaagattctgaggctactctgcaaaggatcagtatg
gttcatcatttattttatgtatcttatctttattggcatttagtacattt
attccactggatcttgccttcttggaaggaagaaatattttctaaacacc
tgtgcatatagtatctaaccccatcatatttcaatcaatattgaatccag
gaaaccagcattcagtgttctgacaggtgattttcattttcttactaagc
tgaattgtcagctgaactagagtaacagaatcgccagaataaccaccatg
tgatgatgtgatgagactgtgaggtggagctaatttgaaccaccttgtct
cctgttcccacacagtcctagactgaagaaactgagaagcagaatcaggt
gacttggcaaactggttgtgtagtctcccttaccccagcctgaaacctgc
ttgctcaggggtggagcttcccgctcaatctttctgccacactgctagct
cagttggtagagcatgagactcttaatctcagggtcgtgggttcgagcct
cacgttgggcgccaaatgttgtgt
tttatttagtttttgtcttagttagggtttctattcctgcacaaacatca
tgaccaagaaacaagttggggaagaaagggtttattcagcttacatttcc
atactgctgttcatcaccaaggaagtcaggactggaactcaagcaggtca
ggaagcaggagctgatgcagaggccatggagggatgttctttactggctt
gcttctcctggcttgctcagcctgctctcttatagaaccaagactaccag
cccagagatggtcccacccacaaggggcccttcccccttgatcactaatt
gagaaaatgccttacagttggatctcatggaggcatttcctcaactgaag
ctcctttctctgtcataactccagctgtgtcaagttgacacagatctagc
cagtacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4223381_4224004
seq2: B6Ng01-147D17.b_48_671 (reverse)

seq1  ACACAACATTTGGCGCCCAACGTGAGGCTCGAACCCACGACCCTGAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACATTTGGCGCCCAACGTGAGGCTCGAACCCACGACCCTGAGATT  50

seq1  AAGAGTCTCATGCTCTACCAACTGAGCTAGCAGTGTGGCAGAAAGATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCTCATGCTCTACCAACTGAGCTAGCAGTGTGGCAGAAAGATTGA  100

seq1  GCGGGAAGCTCCACCCCTGAGCAAGCAGGTTTCAGGCTGGGGTAAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAAGCTCCACCCCTGAGCAAGCAGGTTTCAGGCTGGGGTAAGGGAG  150

seq1  ACTACACAACCAGTTTGCCAAGTCACCTGATTCTGCTTCTCAGTTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAACCAGTTTGCCAAGTCACCTGATTCTGCTTCTCAGTTTCTTC  200

seq1  AGTCTAGGACTGTGTGGGAACAGGAGACAAGGTGGTTCAAATTAGCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGACTGTGTGGGAACAGGAGACAAGGTGGTTCAAATTAGCTCCA  250

seq1  CCTCACAGTCTCATCACATCATCACATGGTGGTTATTCTGGCGATTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGTCTCATCACATCATCACATGGTGGTTATTCTGGCGATTCTGT  300

seq1  TACTCTAGTTCAGCTGACAATTCAGCTTAGTAAGAAAATGAAAATCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAGTTCAGCTGACAATTCAGCTTAGTAAGAAAATGAAAATCACCT  350

seq1  GTCAGAACACTGAATGCTGGTTTCCTGGATTCAATATTGATTGAAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACACTGAATGCTGGTTTCCTGGATTCAATATTGATTGAAATATG  400

seq1  ATGGGGTTAGATACTATATGCACAGGTGTTTAGAAAATATTTCTTCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTAGATACTATATGCACAGGTGTTTAGAAAATATTTCTTCCTTC  450

seq1  CAAGAAGGCAAGATCCAGTGGAATAAATGTACTAAATGCCAATAAAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGCAAGATCCAGTGGAATAAATGTACTAAATGCCAATAAAGATA  500

seq1  AGATACATAAAATAAATGATGAACCATACTGATCCTTTGCAGAGTAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATAAAATAAATGATGAACCATACTGATCCTTTGCAGAGTAGCCT  550

seq1  CAGAATCTTGCTGTCGGTGCTGGACCTGGGCTATAGAGAATCACATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTTGCTGTCGGTGCTGGACCTGGGCTATAGAGAATCACATTGCA  600

seq1  TCACTCTCAAATGTTGGGGAATTC  624
      ||||||||||||||||||||||||
seq2  TCACTCTCAAATGTTGGGGAATTC  624

seq1: chr18_53894317_53894712
seq2: B6Ng01-147D17.g_87_481 (reverse)

seq1  CTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGA  50
      ||||||||||||| | |||||||||||||||||||||||||||| |||||
seq2  CTGTACTGGCTAGATCTGTGTCAACTTGACACAGCTGGAGTTATGACAGA  50

seq1  GAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTAAGGC  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGC  100

seq1  ATTTTCTCAGTTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCA  150
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  ATTTTCTCAATTAGTGATCAAGGGGGAAGGGCCCCTTGTGGGTGGGACCA  150

seq1  TCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCC  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTCTGGGCTGGTAGTCTT-GGTTCTATAAGAGAGCAGGCTGAGCAAGCC  199

seq1  AGGGGAAGCAATTCAGTAAGTACCATCCCTCTATGGCCTCTGCATCAGCT  250
      ||| |||||||  ||||||  | |||||||| ||||||||||||||||||
seq2  AGGAGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCT  249

seq1  CCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAA  299

seq1  CAGCAATGTGGAAGTGTAAGCCGAATAAACCCTTTCCTCCCCAACTTGCT  350
      ||||| | ||||| ||||||| |||||||||||||| ||||||||||| |
seq2  CAGCAGTATGGAAATGTAAGCTGAATAAACCCTTTCTTCCCCAACTTGTT  349

seq1  TCTTGGTCATGATGTTTGTGCACGAATAGAAACCCTGACTAAGACA  396
      |||||||||||||||||||||| ||||||||||||| |||||||||
seq2  TCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTAACTAAGACA  395