BAC Information

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BAC

Clone NameB6Ng01-147J06
Chromosome18 (Build37)13 (Build37)
Map Location 48,281,241 - 48,281,64682,557,032 - 82,558,012
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
Downstream geneLOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147J06.bB6Ng01-147J06.g
ACCDH944421DH944422
length1,006974
definitionDH944421|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J06, 5' end.DH944422|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,281,241 - 48,281,646)(82,557,032 - 82,558,012)
sequence
gaattccttttttttttcatttttattagatattttctttatttacattt
caaattttatcctctttcctcatgtcccctctgaaaccctccttattcca
tcccccctccccctgctcacagacccaccctctcatgcttccctgtcctg
gcgttcccctacactgaggcatcgagccttcataaggccgagggcctctc
ctttcattgctgtcccacaagggcatcctctgctatgtatgtggttgaag
ccattgagtccgtctttggttgtactctttggttgatggtttagtccctg
ggcactctggtggtactggttagttcatattgtagttcctcctatggggc
tgcaaaccacttcaagccccttgggtcctttctctagctcctccattgag
gaccctgtgctcagtccaatggatggctgtgagcatcaacttctgtattt
gtcaggcactgcagagcctctcaggctcctttaagcaagcacttgtgatt
gggttacctcactcaggatgatattttctagttccatccatttgcctagg
aactttatgaactcatcatttttaatagctgagtagtactccattgtgta
aatgcactacattttctttatccatttctctgttgaaggacatctgggtt
ctttctagcttctggctattataaatgaggctgctatggacatatagaaa
taatcccatacatcctgtcagatcattgcagactaaggctagtcctaaaa
taatctttgaaattaaatattaaccctatatagagaaagtgatgtttaaa
atcctgtggcttgtacaggggaataactatatctagtttgtgatgaacaa
acaaaaggagaatgaactctgaattacagaactctcagacactgtctcta
aatatcattcaaaataattttgcagaacttgaaatggtacaacatacata
ttagatcacatgaatatgaggaatagttgatgtgagcattaataggaaac
taatat
gaattctatctatatttcccttatcgtgcatacaacattaatggcatagt
aatttgaatgcttatataactttattttatttgtattatttatacataag
tttcatttgtatctaacttattttaaggagtgtattttccaatttgctta
tatattgaatttatgcttattttgtccctttatataattattttaatagt
attacatttatattatagccactacaaacatcacaattatgtaaaaatga
gttagaatgcaatttttcaatacaggtccaaatcatatagtggaaaaatt
gaaattatatacataatatattataaatatatataaatatcgtaaatata
taaacatatattatatattacaaatataatttttatatataaatatataa
attatataaattatatatatattctaatacttataattttatcatagtga
aaactttaaaaatatgctctcttaattcttttggaatgtgtagtacattg
actttacatatggcctgtccatgcacagtagatagcagaaccttacccat
aggtattggaccagccctggaggagagcctacaatcacctgactcttgac
ttcagtgagaataatgctgccagattccgcacatgaaaagtacctggtta
tggttttctgttcatggcttaatttattagatgcaatgatttctagttcc
acccattttgccgacaatgacgtcatctgttttttttttttttttttttt
ttttttttaataactgaacagtatcatataacgtacctttactaaacttt
cttcccattcatttatccatttatcagctgctggaaaatttggcttcact
ttagactttttgtcaataaggtagtagcaaacatagataatagattgttg
tttgaaaatgatctttgttcctgaaatatctccacagtgagagaactgga
tcattcaatccattttgaattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48281241_48281646
seq2: B6Ng01-147J06.b_50_516 (reverse)

seq1  GAGGCTATGCCAGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCATC  50
      |||||| || ||||||||| |||| |||||||| ||||||||||| ||||
seq2  GAGGCTCTG-CAGTGCCTGACAAATACAGAAGTTGATGCTCACAGCCATC  49

seq1  TATAGAATGGATCA-------CCCAATGGAGGAGCTAGAGAAAGTACCCA  93
       || | |  || ||       | ||||||||||||||||||||| |||||
seq2  CATTGGACTGAGCACAGGGTCCTCAATGGAGGAGCTAGAGAAAGGACCCA  99

seq1  AGGAAC-TGAAGAGGTCTGCAACCCTATAGGTGGAACAACAAGATGAACT  142
      |||  | ||||| ||| |||| ||| ||||| ||||| |||| |||||||
seq2  AGGGGCTTGAAGTGGTTTGCAGCCCCATAGGAGGAACTACAATATGAACT  149

seq1  AACCAGTACC--------CCCCAGAGCTT-----------------GTA-  166
      ||||||||||         ||||| |  |                 ||| 
seq2  AACCAGTACCACCAGAGTGCCCAGGGACTAAACCATCAACCAAAGAGTAC  199

seq1  --------------TC-------TCTGCTGCATATGTATCAGAAGATGGC  195
                    ||       ||  |  ||||  || |||| |||| |
seq2  AACCAAAGACGGACTCAATGGCTTCAACCACATACATAGCAGAGGATGCC  249

seq1  CTAGTCGACCATCATTGGGAAGAGAGGTCCCTAGGTCTTGCAAACTTTAT  245
      || || |  || || ||  | |||||| |||| || |||   ||   |  
seq2  CTTGTGGGACAGCAATGAAAGGAGAGG-CCCTCGGCCTTATGAAGGCTCG  298

seq1  ATGCCCCAATACAGGGGAACACCAGGGCCAAGAAG--TGGGAGGGTAG--  291
      ||||| || |  |||||||| ||||| |   ||||  || |||||| |  
seq2  ATGCCTCAGTGTAGGGGAACGCCAGGACAGGGAAGCATGAGAGGGTGGGT  348

seq1  --GGGTACAGGGCTGGGGGGG---------GGAGGGT---ATAGGCGACT  327
        | |  |||||   ||||||         |||||||   | ||| ||| 
seq2  CTGTGAGCAGGGGGAGGGGGGATGGAATAAGGAGGGTTTCAGAGGGGACA  398

seq1  TTCG------GGATAGCATTTGAAATGTAAATAAAGAAAATATCTAATAA  371
      |  |      |||||  |||||||||||||||||||||||||||||||||
seq2  TGAGGAAAGAGGATAAAATTTGAAATGTAAATAAAGAAAATATCTAATAA  448

seq1  AAAAGACAGTAGATGACAATGAAAAAAAAAAGGAA  406
      |                ||||||||||||||||||
seq2  A----------------AATGAAAAAAAAAAGGAA  467

seq1: chr13_82557032_82558012
seq2: B6Ng01-147J06.g_68_1041

seq1  GAATTCTATCTATATTTCCCTTATCGTGCATACAACATTAATGGCATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTATATTTCCCTTATCGTGCATACAACATTAATGGCATAGT  50

seq1  AATTTGAATGCTTATATAACTTTATTTTATTTGTATTATTTATACATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAATGCTTATATAACTTTATTTTATTTGTATTATTTATACATAAG  100

seq1  TTTCATTTGTATCTAACTTATTTTAAGGAGTGTATTTTCCAATTTGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGTATCTAACTTATTTTAAGGAGTGTATTTTCCAATTTGCTTA  150

seq1  TATATTGAATTTATGCTTATTTTGTCCCTTTATATAATTATTTTAATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGAATTTATGCTTATTTTGTCCCTTTATATAATTATTTTAATAGT  200

seq1  ATTACATTTATATTATAGCCACTACAAACATCACAATTATGTAAAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTATATTATAGCCACTACAAACATCACAATTATGTAAAAATGA  250

seq1  GTTAGAATGCAATTTTTCAATACAGGTCCAAATCATATAGTGGAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAATGCAATTTTTCAATACAGGTCCAAATCATATAGTGGAAAAATT  300

seq1  GAAATTATATACATAATATATTATAAATATATATAAATATCGTAAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATATACATAATATATTATAAATATATATAAATATCGTAAATATA  350

seq1  TAAACATATATTATATATTACAAATATAATTTTTATATATAAATATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATATATTATATATTACAAATATAATTTTTATATATAAATATATAA  400

seq1  ATTATATAAATTATATATATATTCTAATACTTATAATTTTATCATAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAAATTATATATATATTCTAATACTTATAATTTTATCATAGTGA  450

seq1  AAACTTTAAAAATATGCTCTCTTAATTCTTTTGGAATGTGTAGTACATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTAAAAATATGCTCTCTTAATTCTTTTGGAATGTGTAGTACATTG  500

seq1  ACTTTACATATGGCCTGTCCATGCACAGTAGATAGCAGAACCTTACCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATATGGCCTGTCCATGCACAGTAGATAGCAGAACCTTACCCAT  550

seq1  AGGTATTGGACCAGCCCTGGAGGAGAGCCTACAATCACCTGACTCTTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTGGACCAGCCCTGGAGGAGAGCCTACAATCACCTGACTCTTGAC  600

seq1  TTCAGTGAGAATAATGCTGCCAGATTCCGCACATGAAAAGTACCTGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGAGAATAATGCTGCCAGATTCCGCACATGAAAAGTACCTGGTTA  650

seq1  TGGTTTTCTGTTCATGGCTTAATTTATTAGATGCAATGATTTCTAGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCTGTTCATGGCTTAATTTATTAGATGCAATGATTTCTAGTTCC  700

seq1  ACCCATTTTGCCGACAATGACGTCATCTGTTTTTTTTTTTTTTTTTTTTT  750
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  ACCCATTTTGCCGACAATGACGTCATCTG---TTTTTTTTTTTTTTTTTT  747

seq1  TTTTTTTTTTTAATAACTGAACAGTATCATATAACGTACCTTTACTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAATAACTGAACAGTATCATATAACGTACCTTTACTAAAC  797

seq1  TTTCTTCCCATTCATTTATCCATTTATCAGCTGCTGGAGAATTTGGCTTC  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTCTTCCCATTCATTTATCCATTTATCAGCTGCTGGAAAATTTGGCTTC  847

seq1  ACTTTAGACTTTTTGTCAATAATGTAGTAGCAAACATAGTATAATAGATG  900
      |||||||||||||||||||||| |||||||||||||||| ||||||||| 
seq2  ACTTTAGACTTTTTGTCAATAAGGTAGTAGCAAACATAG-ATAATAGATT  896

seq1  TCTGTTTGAAATATTGATC-TTGTTCCTGATATATCTCCAGCAGTGAGAA  949
        ||||||||  | ||||| |||||||||| ||||||||| |||||||| 
seq2  GTTGTTTGAA--AATGATCTTTGTTCCTGAAATATCTCCA-CAGTGAGAG  943

seq1  GACTGGATCATTCAATCCATTTTTGAATTTTT  981
       |||||||||||||||||| ||||||||||||
seq2  AACTGGATCATTCAATCCA-TTTTGAATTTTT  974