BAC Information

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BAC

Clone NameB6Ng01-147J23
Chromosome13 (Build37)
Map Location 64,084,562 - 64,217,323
singlet/doubletdoublet
Overlap geneHsd17b3, Slc35d2
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575
Downstream geneZfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147J23.bB6Ng01-147J23.g
ACCDH944452DH944453
length1,194631
definitionDH944452|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J23, 5' end.DH944453|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,084,562 - 64,085,775)(64,216,896 - 64,217,323)
sequence
gaattcatgcagaacccacagaaagacacaatttaaaaaataattaaacc
taaaaagagaggagagcgctaggctgttaagagcacctgctgttcttcca
gatgtgggtttgatccccagcaccacaagacgctttaaaaacatctctaa
ttccactctacggggacccaacaccctcttctagcctccatggggatcag
acacgcacatgatgcacaaacatacatacagcaaagatttatagaaacca
caaaaaagggctggtgagatggctcagcagttaagagtactgactgctct
tctggaggtcctgagttcaaatcccagcaaccagatgatggatcacaatc
atctgtaatgagaaacaaacaaacaaacaaaacctagggcccagagcgag
caggtcagagcaagaggaagaaagagaagggggaaaatttaaaaagaaag
aaagagaaaaaaagaaaaagaaagaacccacaaaaaagaaaattatttaa
aaagtaaaaacaaacaaacaaaaggctccttgagttctataccactatta
agacataaagtgttcaaagaatactgcatgaagaatatccttttccctta
ctgcataaggagcaacaagcaggtatagactccatggctggacttatgtt
gggaaaatacattattttttgtgcaaagttaatttccttgagccaggcgt
ggtggtgcatgcctttaatcccagcactcagaaggcagaggcaggcggat
ttctgagttcgaggccagcctggtctacaaagtgagttccaagacagcca
gggctatacagagaaaccctgtctcgaaaaaccaaaaaaaacaaaaccaa
aaaaaaaaaaaaaaagagtataaaaaattttggaacagtttgtagcatac
tttgaaaactggatataatctaattcttttccttccccttaggggtggat
gagttctcatctgtgctcacttatatagtatatagtatacatatacaagc
tatgcacatatgatgcagcacagtgagcatctctacatggttaagacaca
atgtgcatatcactgtctgtgacagtctgagtccccactaggtatctaga
acaatcaagcatctgtcgacactctgcgaaggtacgatgcttgatataga
gatgcgtttaatcatctcgtatctgtattctctggtcacagcac
gaattcaaagaattgcctttgctacataatgagtttgagggtagctttgg
ggagacccccaaaagagtatatgtacagtgtagccatcaccaatctttat
ttcagaaactttttctatgttgtgtgtgtgtctttttttgtttttgtttg
tttgttttttgtttttttgttttttcgagacagggtttctctgtatagcc
ctggctgtcctggagctcactttgtagaccaggctggcctcgaactcaga
aatcctcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccac
cacgcccggctgtgtgtgtgtcttagttaggattttattgctgtgaacag
acaccatgaccagttcaaatcttgtaaaggacaacatttaattggggctg
gcttacaggtcagaggttcagtcagttatcatcaaggtgggagcatggca
gcatccaggcagatatggtgcagaaggagctgagagttctacatctttat
ctgaaggctgctaagagaataaaccataggcagctagatgaggatcttat
ttcccacacccacagtgacacacctgctccaacaaggccacacccactcc
aacaaggccacacctcccaacagtgccactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64084562_64085775
seq2: B6Ng01-147J23.b_47_1240

seq1  GAATTCATGCAGAACCCACAGAAAGACACAATTTAAAAAATAATTAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAGAACCCACAGAAAGACACAATTTAAAAAATAATTAAACC  50

seq1  TAAAAAGAGAGGAGAGCGCTAGGCTGTTAAGAGCACCTGCTGTTCTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGAGGAGAGCGCTAGGCTGTTAAGAGCACCTGCTGTTCTTCCA  100

seq1  GATGTGGGTTTGATCCCCAGCACCACAAGACGCTTTAAAAACATCTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGTTTGATCCCCAGCACCACAAGACGCTTTAAAAACATCTCTAA  150

seq1  TTCCACTCTACGGGGACCCAACACCCTCTTCTAGCCTCCATGGGGATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTCTACGGGGACCCAACACCCTCTTCTAGCCTCCATGGGGATCAG  200

seq1  ACACGCACATGATGCACAAACATACATACAGCAAAGATTTATAGAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCACATGATGCACAAACATACATACAGCAAAGATTTATAGAAACCA  250

seq1  CAAAAAAGGGCTGGTGAGATGGCTCAGCAGTTAAGAGTACTGACTGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGGGCTGGTGAGATGGCTCAGCAGTTAAGAGTACTGACTGCTCT  300

seq1  TCTGGAGGTCCTGAGTTCAAATCCCAGCAACCAGATGATGGATCACAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGTCCTGAGTTCAAATCCCAGCAACCAGATGATGGATCACAATC  350

seq1  ATCTGTAATGAGAAACAAACAAACAAACAAAACCTAGGGCCCAGAGCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAATGAGAAACAAACAAACAAACAAAACCTAGGGCCCAGAGCGAG  400

seq1  CAGGTCAGAGCAAGAGGAAGAAAGAGAAGGGGGAAAATTTAAAAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGAGCAAGAGGAAGAAAGAGAAGGGGGAAAATTTAAAAAGAAAG  450

seq1  AAAGAGAAAAAAAGAAAAAGAAAGAACCCACAAAAAAGAAAATTATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAAAAAGAAAAAGAAAGAACCCACAAAAAAGAAAATTATTTAA  500

seq1  AAAGTAAAAACAAACAAACAAAAGGCTCCTTGAGTTCTATACCACTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAAACAAACAAACAAAAGGCTCCTTGAGTTCTATACCACTATTA  550

seq1  AGACATAAAGTGTTCAAAGAATACTGCATGAAGAATATCCTTTTCCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAAGTGTTCAAAGAATACTGCATGAAGAATATCCTTTTCCCTTA  600

seq1  CTGCATAAGGAGCAACAAGCAGGTATAGACTCCATGGCTGGACTTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAAGGAGCAACAAGCAGGTATAGACTCCATGGCTGGACTTATGTT  650

seq1  GGGAAAATACATTATTTTTTGTGCAAAGTTAATTTCCTTGAGCCAGGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATACATTATTTTTTGTGCAAAGTTAATTTCCTTGAGCCAGGCGT  700

seq1  GGTGGTGCATGCCTTTAATCCCAGCACTCAGAAGGCAGAGGCAGGCGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCATGCCTTTAATCCCAGCACTCAGAAGGCAGAGGCAGGCGGAT  750

seq1  TTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAAGACAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAAGACAGCCA  800

seq1  GGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAACAAAACC-A  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAACAAAACCAA  850

seq1  AAAAAAAAAAAAAAAGAGTATAAAAAATTTTGGAACAGTTTGTAGCATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGAGTATAAAAAATTTTGGAACAGTTTGTAGCATAC  900

seq1  TTTGAAAACTGGATTATAATCTAATTCTTTTCCTTCCCCTTAGGGGTGGA  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACTGGA-TATAATCTAATTCTTTTCCTTCCCCTTAGGGGTGGA  949

seq1  TGAGTTCTCATTCTGTGCTCACTTATATAGTAATATAGTAATACATAATA  999
      |||||||||| |||||||||||||||||||| ||||||| |||||| |||
seq2  TGAGTTCTCA-TCTGTGCTCACTTATATAGT-ATATAGT-ATACAT-ATA  995

seq1  CAAAGCTATGCAACATAATGATGCAGGCACAGTGAGCATCTCTACATGGT  1049
      | ||||||||| |||| |||||||| ||||||||||||||||||||||||
seq2  C-AAGCTATGC-ACAT-ATGATGCA-GCACAGTGAGCATCTCTACATGGT  1041

seq1  TAAAGACACCATGTGCCATATCACTGTCCTGTGACAGGTCTTGAGTCCCC  1099
      | ||||||| ||||| ||||||||||| |||||||| ||| ||||| |||
seq2  T-AAGACACAATGTG-CATATCACTGT-CTGTGACA-GTC-TGAGT-CCC  1085

seq1  CACTA-GTATCTAGAAACAAACCAGGGCATCCTGTCAGCCACCTCTGCAG  1148
      ||||| |||||||| ||||| | |  |||| ||||| | || |||||| |
seq2  CACTAGGTATCTAG-AACAATCAA--GCAT-CTGTC-GACA-CTCTGC-G  1128

seq1  AATGTCACCAGATGCGTTTGATGAAGAAGCTGTAAAATCA-ATCAGACCT  1197
      || || ||  ||||| |   ||  ||| || ||  |||||  ||  | ||
seq2  AAGGT-AC--GATGCTTGATATAGAGATGC-GTTTAATCATCTCGTATCT  1174

seq1  G--TTCTCT-GTCACAGCAC  1214
      |  |||||| ||||||||||
seq2  GTATTCTCTGGTCACAGCAC  1194

seq1: chr13_64216896_64217323
seq2: B6Ng01-147J23.g_267_694 (reverse)

seq1  GAGTGGCACTGTTGGGAGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCACTGTTGGGAGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGT  50

seq1  TGGAGCAGGTGTGTCACTGTGGGTGTGGGAAATAAGATCCTCATCTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGGTGTGTCACTGTGGGTGTGGGAAATAAGATCCTCATCTAGCT  100

seq1  GCCTATGGTTTATTCTCTTAGCAGCCTTCAGATAAAGATGTAGAACTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGGTTTATTCTCTTAGCAGCCTTCAGATAAAGATGTAGAACTCTC  150

seq1  AGCTCCTTCTGCACCATATCTGCCTGGATGCTGCCATGCTCCCACCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTCTGCACCATATCTGCCTGGATGCTGCCATGCTCCCACCTTGA  200

seq1  TGATAACTGACTGAACCTCTGACCTGTAAGCCAGCCCCAATTAAATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTGACTGAACCTCTGACCTGTAAGCCAGCCCCAATTAAATGTTG  250

seq1  TCCTTTACAAGATTTGAACTGGTCATGGTGTCTGTTCACAGCAATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACAAGATTTGAACTGGTCATGGTGTCTGTTCACAGCAATAAAAT  300

seq1  CCTAACTAAGACACACACACAGCCGGGCGTGGTGGCGCACGCCTTTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTAAGACACACACACAGCCGGGCGTGGTGGCGCACGCCTTTAATC  350

seq1  CCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCC  400

seq1  TGGTCTACAAAGTGAGCTCCAGGACAGC  428
      ||||||||||||||||||||||||||||
seq2  TGGTCTACAAAGTGAGCTCCAGGACAGC  428