BAC Information

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BAC

Clone NameB6Ng01-147N13
Chromosome13 (Build37)13 (Build37)
Map Location 65,892,191 - 65,892,92866,501,379 - 66,502,156
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147N13.bB6Ng01-147N13.g
ACCDH944612DH944613
length1,173778
definitionDH944612|Mus musculus domesticus DNA, BAC clone: B6Ng01-147N13, 5' end.DH944613|Mus musculus domesticus DNA, BAC clone: B6Ng01-147N13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,892,191 - 65,892,928)(66,501,379 - 66,502,156)
sequence
gaattcctaaacctgataaacagttcagtgaagtagctggatataaaata
aactcaaacaagtcaatggcctttctctacacaaagaataaacaggctga
gaaagaaattagggaaacaaccccttctcaatagtcacaaataatataaa
atatctcggcgtgactctaactaaggaagtgaaagatctgtatgataaaa
acttcaagtctctgaagaaagaaattaaagaagatctcagaagatggaaa
gatctcccatgctcatggattggcaggatcaacattgtaaaaatggctat
cttgccaaaagcaatctacagattcagtgcaatccccatcaaaattccaa
ctcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaat
aacaaaaaacctaggatagcaaaaactcttctcaaggataaaataacctc
tggtggaatcaccatgcctgacctaaagctttactacagagcaattgtga
taaaaactgcatggtactggtatagagacagacaagtagaccaatggaat
agaattgaagacccagaaatgaacccacacacctatggtcacttgatctt
cgacaagggagctaaaaccatccagtggaagaaagacagcgttttcaaca
attggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgat
ccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaact
tcacataaaatcagagacactgaaacttatagaggagaaagtggggaaaa
cccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatg
gcatgtgctgtaagatcgagaattgacaaatgggacctaatgaaacttcc
aagtttctgcaaggcaaaagacaccgtctataagacaaaaagagagaaaa
atgaccctgaccttcacacctgatgtaaagaacaatgtgtatgtgtttta
tgtgcattttgtgtgtgatatgaactgaaataatctttagtctcattatt
ttgattaaatttatggagacccttcatctagagtgatttattttgtcata
ggaattactgacctcaccctggtggagttccttggggaaaatttccattg
tgattttcccctatgaaaccagt
gaattccaggacagccagggctacataaagaaaccctgtctggaaaaacc
aaaaataaataaataaacaaataaatccatatatcaaccagtaacccaag
gtataaaactcccacccaaacagctcaaaccaagaaaccaaatcacctca
cacccagaggcctagacaccagcaaatgaatataatgaataatagccagg
aaaatatatcaccatcaaatccaagctatcctatcacagcaggtcctgag
aaattgaaacatgcaatagatacagtggaaaaatggttgtttgcggtaac
ggagaggagtgaaaacatgggggaagggatagctgtgcacaagaagacct
gcagacaggcacacagacagagagcagagagagacagccacaagaatagg
gaaatagaatgggggttgggggagagcaagtgcagagaacagagacaggg
aacaaagcacagagctgctgtagctggtggtccatgtatataaagcacac
ctgacaacagcagcaggtgatggagacaggtaacgacttaagcatttgct
aagtctcttagagcaggccattgaatttgctgtacactgtcaaccacgga
ggcaaggttcacccttggtccaggaagggaagagagactctcaggcatta
gagatgaatagaaaaaaaatgataaaatggtcaaaaaaatatgaattcca
aatgtttctggcacttaataatcacaatttctgcacattgagaagtgaaa
attagatatttttggaattagaagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65892191_65892928
seq2: B6Ng01-147N13.b_489_1217

seq1  AACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAA  50

seq1  TTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAA  100

seq1  TGGAATAGAATTGAAGACCCAGAAATGAACCCACATACCTATGGTCACTT  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTT  150

seq1  GATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTT  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCGTTT  200

seq1  TCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGA  250

seq1  ATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAA  300

seq1  GGAACTTCACATAAAATCAGAGACACTGAAACTTATAGAGGAGAAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCACATAAAATCAGAGACACTGAAACTTATAGAGGAGAAAGTGG  350

seq1  GGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACA  400
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACA  400

seq1  GCAATGGCATGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCATGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAA  450

seq1  ACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGAG  500
      ||| | |||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTTCCAAGTTTCTGCAAGGCAAAAGACACCGTCTATAAGACAAAAAGAG  500

seq1  AGAAAAATGACCCTGACCTTCAACACCTGATGTAAAGAACAATGTGTATG  550
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAAAATGACCCTGACCTTC-ACACCTGATGTAAAGAACAATGTGTATG  549

seq1  TGTTTTATGTGCATGTTTGTGTGTGATATTGAACTGAAATAATCTTTAGT  600
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  TGTTTTATGTGCAT-TTTGTGTGTGATA-TGAACTGAAATAATCTTTAGT  597

seq1  CTCA-TATTTTGATAAAATTTATGGAGACCCTTCATCTAGAGTGATTTAT  649
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCATTATTTTGATTAAATTTATGGAGACCCTTCATCTAGAGTGATTTAT  647

seq1  ATGTCCATAGAATTTACTGACCTCACTCTGGTGAAGTTCTTGTGGGAAAT  699
       |   ||||| | ||||||||||||| |||||| ||||| | |||| || 
seq2  TTTGTCATAGGAATTACTGACCTCACCCTGGTGGAGTTCCT-TGGGGAAA  696

seq1  ATTTCCATTAGTGATTTTTCTCACTTAATGAAACACAGT  738
      ||||||||| |||||||| | |     ||||||| ||||
seq2  ATTTCCATT-GTGATTTTCCCC----TATGAAAC-CAGT  729

seq1: chr13_66501379_66502156
seq2: B6Ng01-147N13.g_70_847

seq1  GAATTCCAGGACAGCCAGGGCTACATAAAGAAACCCTGTCTGGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACATAAAGAAACCCTGTCTGGAAAAACC  50

seq1  AAAAATAAATAAATAAACAAATAAATCCATATATCAACCAGTAACCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAATAAACAAATAAATCCATATATCAACCAGTAACCCAAG  100

seq1  GTATAAAACTCCCACCCAAACAGCTCAAACCAAGAAACCAAATCACCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAACTCCCACCCAAACAGCTCAAACCAAGAAACCAAATCACCTCA  150

seq1  AACCCAGAGGCCTAGACACCAGCAAATGAATATAATGAATAATAGCCAGG  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGAGGCCTAGACACCAGCAAATGAATATAATGAATAATAGCCAGG  200

seq1  AAAATATATCACCATCAAATCCAAGCTATCCTATCACAGCAGGTCCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAATATATCACCATCAAATCCAAGCTATCCTATCACAGCAGGTCCTGAG  250

seq1  AAATTGAAACATGCAATAGATACAGTGGAAAAATGGTTGTTTGCGGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAACATGCAATAGATACAGTGGAAAAATGGTTGTTTGCGGTAAC  300

seq1  GGAGAGGAGTGAAAACATGGGGGAAGGGATAGCTGTGCACAAGAAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGTGAAAACATGGGGGAAGGGATAGCTGTGCACAAGAAGACCT  350

seq1  GCAGACAGGCACACAGACAGAGAGCAGAGAGAGACAGCCACAAGAATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGGCACACAGACAGAGAGCAGAGAGAGACAGCCACAAGAATAGG  400

seq1  GAAATAGAATGGGGGTTGGGGGAGAGCAAGTGCAGAGAACAGAGACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAATGGGGGTTGGGGGAGAGCAAGTGCAGAGAACAGAGACAGGG  450

seq1  AACAAAGCACAGAGCTGCTGTAGCTGGTGGTCCATGTATATAAAGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCACAGAGCTGCTGTAGCTGGTGGTCCATGTATATAAAGCACAC  500

seq1  CTGACAACAGCAGCAGGTGATGGAGACAGGTAACGACTTAAGCATTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACAGCAGCAGGTGATGGAGACAGGTAACGACTTAAGCATTTGCT  550

seq1  AAGTCCCTAAGAGCAGGCCATTGAATTTGCTGTACACTGTCAACCACGGA  600
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTTAGAGCAGGCCATTGAATTTGCTGTACACTGTCAACCACGGA  600

seq1  GGCAAGGTTCACCCTTGGTCCAGGAAGGGAAGAGAGACTCTCAGGCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGTTCACCCTTGGTCCAGGAAGGGAAGAGAGACTCTCAGGCATTA  650

seq1  GAGATGAATAG-AAAAAAATGATAAAATGGTC-AAAAAATATGAATTCCA  698
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  GAGATGAATAGAAAAAAAATGATAAAATGGTCAAAAAAATATGAATTCCA  700

seq1  AATGTTTCTGGCACTAAATAATCACAATTTCTGCAACATATGAGAAGGTG  748
      ||||||||||||||| |||||||||||||||||| |||| |||||| |||
seq2  AATGTTTCTGGCACTTAATAATCACAATTTCTGC-ACAT-TGAGAA-GTG  747

seq1  AAAAGTAGAAATTATTGGAA-TAGAAGAATA  778
      |||| |||| ||| |||||| |||||||| |
seq2  AAAATTAGATATTTTTGGAATTAGAAGAAGA  778