BAC Information

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BAC

Clone NameB6Ng01-148M05
Chromosome13 (Build37)
Map Location 84,469,823 - 84,470,983
singlet/doubletsinglet
Overlap genenone
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795
Downstream geneLOC667111, LOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148M05.bB6Ng01-148M05.g
ACCDH945281DH945282
length1,2801,146
definitionDH945281|Mus musculus domesticus DNA, BAC clone: B6Ng01-148M05, 5' end.DH945282|Mus musculus domesticus DNA, BAC clone: B6Ng01-148M05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccagatgttcaaaaatctatagccagtccttcttaagatatt
ctaccaaacctcttatatgacattagtatcattctaacatccaaaccaat
atctggttttggtattagacacaataataaaggaaaaaaatctacagacc
aatatccctaatgagcataaattcaaaaacactctaaacatttgcaaaca
aaaaacagacatgcatcagaaagattgtataccataaccaagttgggtta
aatctttgatgaggaggatgattcaatacatactagtcaataaatataat
aagccacatgaatagacttagagatagaagttggagacatgatcattgcg
atagatgaattaaaagcctctgataaatcaaacatgacttcattaataaa
tgtcctagaccatgtatggctagaaggaaaatacctcaacagaataaaaa
cataggagaaacacacagacaacatcacgataaatggagaaaagcttgaa
gcagtcctgctgaagtcaggattgaggtagggatgtccactatcctcact
gctttttaatattgcacttgaagccctagctataataatagagcaagagc
aaatggatacaataaaaagtcaattgatccctatttgcagatgatatgcc
aaagttctaacagaaaattctagaaactcaacaatgtggaagaatcaact
tgcacaaatcaatagcttttctatccaccaacaagcatacagaggtgatc
atagacagttccattcacaataacttcaaagaaataaaatatctaaggat
aaacctagtcaaggaagtgaaggacctcaacaatgaaaactaaattcatg
aggaatacactgggaaatgaaagtctatcccattctcacagatttatatt
gtgaaacgacagtgttattaaaagctatttgcagattcaatgcaacatca
tcaaaatatccacctcattcttcatatatttatgaaaaactgccctatat
tccatatgggaccataaaagtcccagagagcaaaacaacacctgaacaaa
aaaaagcattgctggaaaaataccatcccagatctaggatattaccttgc
acagtattaaaacttataggtactggcccaaaaacgacattagctcatga
tgaatgtaacaaaaacaacgccagttaatctgcataattggacaagatgt
aagcctatggtggataggtgaaaccaagtcgagcagctagattaagtacg
ctgcgatgtgtacccctgtgctagtcaagc
gaattcaattcccagcacctacattgcagctcacacctgtctgtaactct
acttccaggggacctgaaaaaacatcaaggcatataaaattttaagaaat
ttaaaaaaacaaaggaaaaacactgttgcttggaaaatgtataaggaaca
taaatttatttactcgttgttgtgaatgttggaactccaaggtcagtgat
ttggtttctgagtgagtcctaagtatctatttctgaaatgatgaccatac
tactatatcttctaggtggaacacatgctgtccccttataaggtaaacaa
aggcagaggaaaaaattagtctacttcatttaattaagagcttattagtg
agaatggaactctcacaatttgatcatcttctaaaggccccacctcttaa
tgctgtctcattcctagagtcttaggttccttcctatgaatttgagttta
attatctcttcagactatagcatagacacttattacatagacatttacct
ttctcagaccatcctatgtcttaaaaactacattttcaaaaaaaaggagc
aaaagaatactgcttaaatatctaaataaaaattaaaacaaaacattgtt
gactttgtttcatgatcgttaatctccatgtatgtcttatctcttttttc
cagaagaatctacatttgcctgagtatttggtgaggagaactcttcttct
gaagagtaatataacaaaacgtgggccttctcatgttacccttaagtgct
tgtatctgtgtttatgagcatttgagtatttctcaatgaaacacttttag
tagcatcaagtctttatgataggattgtgctaacattgagaagtactttg
aaacacaaatcctccttctctgttgccactagggacctgcccccttctat
cttcctgcctcccaaattaaacaacaaactttcaaaatagaaaaacaaag
gcaaccatcaagtactcagtagctcctagtgagatatccccctcaagtga
cacccttgaaactgccactctataatagtgacttctagtacatcctaggc
tcaaatgattcacagggagacctatatggtctttctttccacgttagcat
tacctttgcagcattatactttttaaaagaatatcacccttctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84469823_84470983
seq2: B6Ng01-148M05.g_66_1211

seq1  GAATTCAATTCCCAGCACCTACATTGCAGCTCACACCTGTCTGTAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCACCTACATTGCAGCTCACACCTGTCTGTAACTCT  50

seq1  ACTTCCAGGGGACCTGAAAAAACATCAAGGCATATAAAATTTTAAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGGGGACCTGAAAAAACATCAAGGCATATAAAATTTTAAGAAAT  100

seq1  TTAAAAAAACAAAGGAAAAACACTGTTGCTTGGAAAATGTATAAGGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAACAAAGGAAAAACACTGTTGCTTGGAAAATGTATAAGGAACA  150

seq1  TAAATTTATTTACTCGTTGTTGTGAATGTTGGAACTCCAAGGTCAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTATTTACTCGTTGTTGTGAATGTTGGAACTCCAAGGTCAGTGAT  200

seq1  TTGGTTTCTGAGTGAGTCCTAAGTATCTATTTCTGAAATGATGACCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTGAGTGAGTCCTAAGTATCTATTTCTGAAATGATGACCATAC  250

seq1  TACTATATCTTCTAGGTGGAACACATGCTGTCCCCTTATAAGGTAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATCTTCTAGGTGGAACACATGCTGTCCCCTTATAAGGTAAACAA  300

seq1  AGGCAGAGGAAAAAATTAGTCTACTTCATTTAATTAAGAGCTTATTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGAAAAAATTAGTCTACTTCATTTAATTAAGAGCTTATTAGTG  350

seq1  AGAATGGAACTCTCACAATTTGATCATCTTCTAAAGGCCCCACCTCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAACTCTCACAATTTGATCATCTTCTAAAGGCCCCACCTCTTAA  400

seq1  TGCTGTCTCATTCCTAGAGTCTTAGGTTCCTTCCTATGAATTTGAGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTCATTCCTAGAGTCTTAGGTTCCTTCCTATGAATTTGAGTTTA  450

seq1  ATTATCTCTTCAGACTATAGCATAGACACTTATTACATAGACATTTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCTTCAGACTATAGCATAGACACTTATTACATAGACATTTACCT  500

seq1  TTCTCAGACCATCCTATGTCTTAAAAACTACATTTTCAAAAAAAAGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGACCATCCTATGTCTTAAAAACTACATTTTCAAAAAAAAGGAGC  550

seq1  AAAAGAATACTGCTTAAATATCTAAATAAAAATTAAAACAAAACATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATACTGCTTAAATATCTAAATAAAAATTAAAACAAAACATTGTT  600

seq1  GACTTTGTTTCATGATCGTTAATCTCCATGTATGTCTTATCTCTTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTTTCATGATCGTTAATCTCCATGTATGTCTTATCTCTTTTTTC  650

seq1  CAGAAGAATCTACATTTGCCTGAGTATTTGGTGAGGAGAACTCTTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAATCTACATTTGCCTGAGTATTTGGTGAGGAGAACTCTTCTTCT  700

seq1  GAAGAGTAATATAACAAAACGTGGGCCTTCTCATGTTACCCTTAAGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTAATATAACAAAACGTGGGCCTTCTCATGTTACCCTTAAGTGCT  750

seq1  TGTATCTGTGTTTATGAGCATTTGAGTATTTCTCAATGAAACACTTTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGTGTTTATGAGCATTTGAGTATTTCTCAATGAAACACTTTTAG  800

seq1  TAGCATCAAGTCTTTATGATAGGATTGTGCTAACATTGAGAAGTACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCAAGTCTTTATGATAGGATTGTGCTAACATTGAGAAGTACTTTG  850

seq1  AAACACAAATCCTCCTTCTCTGTTGCCACTAGGGACCTGCCCCCTTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAATCCTCCTTCTCTGTTGCCACTAGGGACCTGCCCCCTTCTAT  900

seq1  CTTCCTGCCTCCCAAATTAAAACAAACAAACTTTCAAAATAGAAAAACAA  950
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  CTTCCTGCCTCCCAAATTAAA--CAACAAACTTTCAAAATAGAAAAACAA  948

seq1  AGGCAACCATCAAGTACTCAGGTAGCTCCTAGTGAGATAATCCCCTCAAG  1000
      |||||||||||||||||||| ||||||||||||||||||  |||||||||
seq2  AGGCAACCATCAAGTACTCA-GTAGCTCCTAGTGAGATATCCCCCTCAAG  997

seq1  TTGACAACCCTTGAAACTGCAACTCATATAATAGTGACTTCTAGTACATT  1050
       |||| |||||||||||||| |||| |||||||||||||||||||||| |
seq2  -TGAC-ACCCTTGAAACTGCCACTC-TATAATAGTGACTTCTAGTACA-T  1043

seq1  CCTAGGCTCAAAATGATTCACAGGGAGACCTATATTGGTCTTTCTTTCTA  1100
      ||||||||| |||||||||||||||||||||||| ||||||||||||| |
seq2  CCTAGGCTC-AAATGATTCACAGGGAGACCTATA-TGGTCTTTCTTTCCA  1091

seq1  CGTAAGCATTTTAACTTTGCAGCATTAAATACTTTTTAAAAAAGAAATAT  1150
      ||| ||||  ||| ||||||||||||  |||||||||||||    |||||
seq2  CGTTAGCA--TTACCTTTGCAGCATT--ATACTTTTTAAAA---GAATAT  1134

seq1  CACAC-TCTGAT  1161
      ||| | ||||||
seq2  CACCCTTCTGAT  1146