BAC Information

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BAC

Clone NameB6Ng01-149H08
Chromosome13 (Build37)
Map Location 36,137,234 - 36,184,806
singlet/doubletdoublet
Overlap geneLyrm4
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, LOC100042773
Downstream geneFars2, LOC100041590, LOC666758, Nrn1, F13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149H08.bB6Ng01-149H08.g
ACCDH945791DH945792
length1,1751,165
definitionDH945791|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H08, 5' end.DH945792|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,137,234 - 36,138,428)(36,183,638 - 36,184,806)
sequence
gaattcttcgtgtttaccagccttcaaaatggagcaccaatattttgcgc
ccattgttagactcaaactgaaacactggctgttcctgggtcctggatct
gcttgtcacccaccctgaaagtcttggaatttgtttgcttccataatcat
tttagtcaatgcctttccccattcttaacttgcatgacaactgtagtctc
aggccagcgttttctttttttatttttttttaattaacaacagggaggag
atgtagcctcccctcccccagcctcaatggttccactgtttacacctgga
tggagcttgccgctcaatcgttctgccacgcccactgctggaacctgccg
ctttgctgttcggagccatacacgtggtcaccctgctactggtccccagg
actatttggcaggaatcggcccccccttcccctcctttataactgcgtgc
tgatatagtaaaattgagctttgatcagagttggctttgacttggctcca
ttttttccttctgtctgtttagttcctctctttcagccagagctgccatc
tcagttgaactgttccttgcaagctgctggccggcccgcaacaggcaaca
atacaattaccaccactgccaccccctcagtccccaacaacataataacc
aatcaggacactgcaactcggatttctctggagtctaattagattgagga
gtcaaccaaccacttgaaatacgattgtgtgtagttttaagtggagcacc
caatgtttagattctaaacattttcaattcacagtataattagaggtctg
gaaattactttctttacaacaggacttcatgtaataactaatcatacaac
caatatacaagtattaaaatcaaatatttacatatttctttccaatttgg
catttataaaaatgttttcgcgggcagtggtggcgcacgcctttaatccc
agcacttgggaggcagaggcaggcagatttctgagtttgagccagcctgg
tctacagagtgagttccagacagccaggctaagaagaaccttgtctcgaa
aacaaacaaaaacaaaacaaccaaaatgttttcatatgtcataatttgat
gtgtcattttatttcagcattatcataaacgaacaacattctaatattgt
gaacggactgttttatcatgaattg
gaattcattagaatgtatgctgtcaggagaataagagatgccttccgaga
aaataagaatgtaaaagaccctgtagaaattcaagccctggtgaataaag
ccaaaagagaccttgaaataatccgcagacaggtaagatggttcggtgac
agactgcttttcattattcgtcttcagctttgacattccctccttgattg
gacatcactgctctggtgtttgtgatttacaccacaggatggtgaggtac
tgtcttctctcctaatgcaggcatacaaggacaaactgtcgtatcaccag
attcaagggcattctacaggaaaataccagctttctgggaaacttagctc
ttgggctttactgaagttcatggtttcagtgtgggaaactccaaggggga
aaactgctttttaatcctagtgtttttaggatgttttgtgcatcattatg
cacatatcatagcatcttcctttcctcatatctgtcatcagaatttaagg
tgaacagagtgggttataagcatgtatgttagcatgtgacaggtgtgtag
gtaggcacagggtacagagcacagctgctgacatgctggcccacagtgga
gctgagaggtttccggtttcattctgcatctccctgactccctggcttgt
ttttctggatctttgtaaggtgagcctcgcctacaagcagcatggtctcc
tggctagtgtgttactatagtgtctgacttctgaattattgacgtgtcaa
agactgctggtaggcttctattgatcagctttctgccctaaacttcccat
ttcacttttcttcaaattggcatagctccatttcctttttcatctgtttt
tactcttgtagcaagtttgtttttgaagtgtggcaagtgaacatttccag
agttgtgttgtgttctggaatggctgttggtttccccttaggaaatgcct
gcatgggccaacgtcgcacaacattcacctctttccctgattctttcaca
gttatctcaaaatagaggttaaacaagaaaatggtggggaagaatgaaat
ttgcgttttatgtggaagatagtgttctgttgcttacgtagtgcaccctt
cctttcagagtagcatcagcctgaaacctcttctgagatggtgcagttac
tagtgaaagaatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36137234_36138428
seq2: B6Ng01-149H08.b_47_1221

seq1  GAATTCTTCGTGTTTACCAGCCTTCAAAATGGAGCACCAATATTTTGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGTGTTTACCAGCCTTCAAAATGGAGCACCAATATTTTGCGC  50

seq1  CCATTGTTAGACTCAAACTGAAACACTGGCTGTTCCTGGGTCCTGGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTAGACTCAAACTGAAACACTGGCTGTTCCTGGGTCCTGGATCT  100

seq1  GCTTGTCACCCACCCTGAAAGTCTTGGAATTTGTTTGCTTCCATAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCACCCACCCTGAAAGTCTTGGAATTTGTTTGCTTCCATAATCAT  150

seq1  TTTAGTCAATGCCTTTCCCCATTCTTAACTTGCATGACAACTGTAGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCAATGCCTTTCCCCATTCTTAACTTGCATGACAACTGTAGTCTC  200

seq1  AGGCCAGCGTTTTCTTTTTTTATTTTTTTTTAATTAACAACAGGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCGTTTTCTTTTTTTATTTTTTTTTAATTAACAACAGGGAGGAG  250

seq1  ATGTAGCCTCCCCTCCCCCAGCCTCAATGGTTCCACTGTTTACACCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCTCCCCTCCCCCAGCCTCAATGGTTCCACTGTTTACACCTGGA  300

seq1  TGGAGCTTGCCGCTCAATCGTTCTGCCACGCCCACTGCTGGAACCTGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTGCCGCTCAATCGTTCTGCCACGCCCACTGCTGGAACCTGCCG  350

seq1  CTTTGCTGTTCGGAGCCATACACGTGGTCACCCTGCTACTGGTCCCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGTTCGGAGCCATACACGTGGTCACCCTGCTACTGGTCCCCAGG  400

seq1  ACTATTTGGCAGGAATCGGCCCCCCCTTCCCCTCCTTTATAACTGCGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGGCAGGAATCGGCCCCCCCTTCCCCTCCTTTATAACTGCGTGC  450

seq1  TGATATAGTAAAATTGAGCTTTGATCAGAGTTGGCTTTGACTTGGCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGTAAAATTGAGCTTTGATCAGAGTTGGCTTTGACTTGGCTCCA  500

seq1  TTTTTTCCTTCTGTCTGTTTAGTTCCTCTCTTTCAGCCAGAGCTGCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTTCTGTCTGTTTAGTTCCTCTCTTTCAGCCAGAGCTGCCATC  550

seq1  TCAGTTGAACTGTTCCTTGCAAGCTGCTGGCCGGCCCGCAACAGGCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGAACTGTTCCTTGCAAGCTGCTGGCCGGCCCGCAACAGGCAACA  600

seq1  ATACAATTACCACCACTGCCACCCCCTCAGTCCCCAACAACATAATAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTACCACCACTGCCACCCCCTCAGTCCCCAACAACATAATAACC  650

seq1  AATCAGGACACTGCAACTCGGATTTCTCTGGAGTCTAATTAGATTGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGACACTGCAACTCGGATTTCTCTGGAGTCTAATTAGATTGAGGA  700

seq1  GTCAACCAACCACTTGAAATACGATTGTGTGTAGTTTTAAGTGGAGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCAACCACTTGAAATACGATTGTGTGTAGTTTTAAGTGGAGCACC  750

seq1  CAATGTTTAGATTCTAAACATTTTCAATTCACAGTATAATTAGAGGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTAGATTCTAAACATTTTCAATTCACAGTATAATTAGAGGTCTG  800

seq1  GAAATTACTTTCTTTACAACAGGACTTCATGTAATAACTAATCATACAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACTTTCTTTACAACAGGACTTCATGTAATAACTAATCATACAAC  850

seq1  CAATATACAAGTATTAAAATCAAATATTTACATATTTCTTTCCAATTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACAAGTATTAAAATCAAATATTTACATATTTCTTTCCAATTTGG  900

seq1  CATTTATAAAAATGTTTTCGCGGGGCAGTGGTGGCGCACGCCTTTAATCC  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATTTATAAAAATGTTTTCGC-GGGCAGTGGTGGCGCACGCCTTTAATCC  949

seq1  CAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCT  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGA-GCCAGCCT  998

seq1  GGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAACCCTGTC  1050
      |||||||||||||||||||| |||||||| ||||| |||  |||| ||||
seq2  GGTCTACAGAGTGAGTTCCA-GACAGCCA-GGCTA-AGAAGAACCTTGTC  1045

seq1  TCGAAAAACCAAAACAAAAAACAAAAACAAACCAAAAATGTTTTCATATT  1100
      |||||||    |||||||||   |||||||  | ||||||||||||||| 
seq2  TCGAAAA---CAAACAAAAA--CAAAACAA--CCAAAATGTTTTCATAT-  1087

seq1  GGTCATAAATTTTGATGTGTCAATTTTATTTTCAGCCATTTATCATAAAC  1150
       |||||||  ||||||||||| |||||| |||||||   |||||||||||
seq2  -GTCATAA--TTTGATGTGTC-ATTTTA-TTTCAGC--ATTATCATAAAC  1130

seq1  GAACAACCATCT-ATATTGTTGACAGTACTG-TTTATCATGATATTG  1195
      |||||||  ||| |||||| |||  | |||| |||||||||| ||||
seq2  GAACAACATTCTAATATTG-TGAACGGACTGTTTTATCATGA-ATTG  1175

seq1: chr13_36183638_36184806
seq2: B6Ng01-149H08.g_69_1233 (reverse)

seq1  CATATTCTCTCACTAGGTAACTGCA-CAACTCAGAAGA-GTCTCAGGCTT  48
      |||||||| |||||| ||||||||| || ||||||||| || |||||| |
seq2  CATATTCTTTCACTA-GTAACTGCACCATCTCAGAAGAGGTTTCAGGC-T  48

seq1  GATGCTACTCTGGAAGAGAGTGCTGCACTACGTAAGCAACAGAAACAGAC  98
      |||||||||||| ||| ||  | ||||||||||||||||||||   | ||
seq2  GATGCTACTCTGAAAG-GAAGGGTGCACTACGTAAGCAACAGA---ACAC  94

seq1  TTAATC-TCCACATAAAACGCAAATTTCATTCTT-CACACCATTTTCTTG  146
      |  ||| ||||||||||||||||||||||||||| | |||||||||||||
seq2  T--ATCTTCCACATAAAACGCAAATTTCATTCTTCCCCACCATTTTCTTG  142

seq1  TTTAACCTCTATTTTGAGATAACTGTGAAAAGAATCAGGGAAAGA-GTGA  195
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  TTTAACCTCTATTTTGAGATAACTGTG-AAAGAATCAGGGAAAGAGGTGA  191

seq1  ATGTGGTGCGACGTTGG-CCATGCAGGCATCTTCTAAGGGGAAACCAACA  244
      |||| |||||||||||| |||||||||||| | |||||||||||||||| 
seq2  ATGTTGTGCGACGTTGGCCCATGCAGGCATTTCCTAAGGGGAAACCAAC-  240

seq1  AGCCATTCCAGAACACAACACAACTCTGGAAATGTTCACCTGCCACACTT  294
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCCATTCCAGAACACAACACAACTCTGGAAATGTTCACTTGCCACACTT  290

seq1  CAGAAACAAACTTGCTACAAGAGTAAAAACAGATGAAAAAGGAAATGGAG  344
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAACTTGCTACAAGAGTAAAAACAGATGAAAAAGGAAATGGAG  340

seq1  CTATGCCAATTTGAAGAAAAGTGAAATGGGAAGTTTAGGGCAGAAAGCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCAATTTGAAGAAAAGTGAAATGGGAAGTTTAGGGCAGAAAGCTG  390

seq1  ATCAATAGAAGCCTACCAGCAGTCTTTGACACGTCAATAATTCAGAAGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAGAAGCCTACCAGCAGTCTTTGACACGTCAATAATTCAGAAGTC  440

seq1  AGACACTATAGTAACACACTAGCCAGGAGACCATGCTGCTTGTAGGCGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTATAGTAACACACTAGCCAGGAGACCATGCTGCTTGTAGGCGAG  490

seq1  GCTCACCTTACAAAGATCCAGAAAAACAAGCCAGGGAGTCAGGGAGATGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTTACAAAGATCCAGAAAAACAAGCCAGGGAGTCAGGGAGATGC  540

seq1  AGAATGAAACCGGAAACCTCTCAGCTCCACTGTGGGCCAGCATGTCAGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAACCGGAAACCTCTCAGCTCCACTGTGGGCCAGCATGTCAGCA  590

seq1  GCTGTGCTCTGTACCCTGTGCCTACCTACACACCTGTCACATGCTAACAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTCTGTACCCTGTGCCTACCTACACACCTGTCACATGCTAACAT  640

seq1  ACATGCTTATAACCCACTCTGTTCACCTTAAATTCTGATGACAGATATGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTATAACCCACTCTGTTCACCTTAAATTCTGATGACAGATATGA  690

seq1  GGAAAGGAAGATGCTATGATATGTGCATAATGATGCACAAAACATCCTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAGATGCTATGATATGTGCATAATGATGCACAAAACATCCTAA  740

seq1  AAACACTAGGATTAAAAAGCAGTTTTCCCCCTTGGAGTTTCCCACACTGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTAGGATTAAAAAGCAGTTTTCCCCCTTGGAGTTTCCCACACTGA  790

seq1  AACCATGAACTTCAGTAAAGCCCAAGAGCTAAGTTTCCCAGAAAGCTGGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAACTTCAGTAAAGCCCAAGAGCTAAGTTTCCCAGAAAGCTGGT  840

seq1  ATTTTCCTGTAGAATGCCCTTGAATCTGGTGATACGACAGTTTGTCCTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTGTAGAATGCCCTTGAATCTGGTGATACGACAGTTTGTCCTTG  890

seq1  TATGCCTGCATTAGGAGAGAAGACAGTACCTCACCATCCTGTGGTGTAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGCATTAGGAGAGAAGACAGTACCTCACCATCCTGTGGTGTAAA  940

seq1  TCACAAACACCAGAGCAGTGATGTCCAATCAAGGAGGGAATGTCAAAGCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACACCAGAGCAGTGATGTCCAATCAAGGAGGGAATGTCAAAGCT  990

seq1  GAAGACGAATAATGAAAAGCAGTCTGTCACCGAACCATCTTACCTGTCTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACGAATAATGAAAAGCAGTCTGTCACCGAACCATCTTACCTGTCTG  1040

seq1  CGGATTATTTCAAGGTCTCTTTTGGCTTTATTCACCAGGGCTTGAATTTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTATTTCAAGGTCTCTTTTGGCTTTATTCACCAGGGCTTGAATTTC  1090

seq1  TACAGGGTCTTTTACATTCTTATTTTCTCGGAAGGCATCTCTTATTCTCC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTCTTTTACATTCTTATTTTCTCGGAAGGCATCTCTTATTCTCC  1140

seq1  TGACAGCATACATTCTAATGAATTC  1169
      |||||||||||||||||||||||||
seq2  TGACAGCATACATTCTAATGAATTC  1165