BAC Information

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BAC

Clone NameB6Ng01-149K01
Chromosome13 (Build37)
Map Location 115,999,146 - 116,135,825
singlet/doubletdoublet
Overlap genenone
Upstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1, EG668276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149K01.bB6Ng01-149K01.g
ACCDH945915DH945916
length3961,123
definitionDH945915|Mus musculus domesticus DNA, BAC clone: B6Ng01-149K01, 5' end.DH945916|Mus musculus domesticus DNA, BAC clone: B6Ng01-149K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,135,424 - 116,135,825)(115,999,146 - 116,000,274)
sequence
tcaaatcattcaagataagtgaaattaggcatagaaagtcaaatactgca
tctcattgttgagtgaactcttaaaaaaacaggtcctatggaagtagaga
atgaagtggtgttcctgggaggctagggagagcaggagatggaagactgg
gagattctgtaaggagcaccaagctgtagttaggaacaggaagtgagcca
tgcttcgtgaaagaggagaacacagaaaatacaatgcagggctcttccct
gtactgaaggataggacactgtgattgtgtcaaaatagaaaatgtttgga
ggataatcatatctaacctggctgaaacaatctacacatgcgtcactaac
tgacatcatgcttaatgtgtgtgtatgtgtgtgtgtgtgtgtgtgt
gaattctacattgtgtagagatttggtagaggcttttagaacctctgctc
ttacactttgttttgaacttacagttacttgaaaataatcagcaaggaaa
gacctatcattgcacacataattgaatgttttgggtttcactttgtatct
tctaatgaattagtaatatcaacaagatcacaaattgtctggcacctcct
cctcctcctggcccattttctctaacagcaaattagatgttgcatcgatt
atgattcttcaactaaaactatcttgacatgctaaattatttttcagccg
tttagtcattcattctgtcaatcaatacgtctttactgagagtctatgat
aaatcaaccactttgtttgtaattgtagctatggggatgataattgttcc
tggtcttaatatacccttttttttcagaatcaaaagcagttatgagtata
tttaggctggctgagcttatcaattcagtatactgcatctgcttgccaca
ttattaataccatgtttttattcagggtgtgtctaagagtactctgatct
tttcaaatcaatgaggagatatcactcttaaatataaactccatgatctg
ttaatttttgaggatgtgagaaatatggggaaatactagtattgcagtca
gcgcagattacccaagataagcattacaacagaatgagcctctaagaaac
agtatgacttatctcttcccgttgactgaagatgctcatctaaaccacag
ttgacaagggatggcattccattcagttcttaggtgatggcacactctct
ttctaacctaaagtaaccttattggttcacctgtggatatactaaactat
atgccaaacttaaattggatagatatagggatgaaaagaatttatattta
tttttagagtgtgcccagaagactaaacagagacacgtcaaactagtttc
tttgtgatttaaacatttattcatatgtctgttttgtaagtatgaattgc
tgattcagaaacagaagttgtggtgaagttgagctgtggctataatctag
atctgggctgtacatctgggtttccaggttcaactggaactgaggtgggg
atttgtttgtagaagggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116135424_116135825
seq2: B6Ng01-149K01.b_44_445 (reverse)

seq1  ACACACACACACACACACACATACACACACATTAAGCATGATGTCAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACATACACACACATTAAGCATGATGTCAGTTA  50

seq1  GTGACGCATGTGTAGATTGTTTCAGCCAGGTTAGATATGATTATCCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGCATGTGTAGATTGTTTCAGCCAGGTTAGATATGATTATCCTCCA  100

seq1  AACATTTTCTATTTTGACACAATCACAGTGTCCTATCCTTCAGTACAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCTATTTTGACACAATCACAGTGTCCTATCCTTCAGTACAGGG  150

seq1  AAGAGCCCTGCATTGTATTTTCTGTGTTCTCCTCTTTCACGAAGCATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCTGCATTGTATTTTCTGTGTTCTCCTCTTTCACGAAGCATGGC  200

seq1  TCACTTCCTGTTCCTAACTACAGCTTGGTGCTCCTTACAGAATCTCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCCTGTTCCTAACTACAGCTTGGTGCTCCTTACAGAATCTCCCAG  250

seq1  TCTTCCATCTCCTGCTCTCCCTAGCCTCCCAGGAACACCACTTCATTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATCTCCTGCTCTCCCTAGCCTCCCAGGAACACCACTTCATTCTC  300

seq1  TACTTCCATAGGACCTGTTTTTTTAAGAGTTCACTCAACAATGAGATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCATAGGACCTGTTTTTTTAAGAGTTCACTCAACAATGAGATGCA  350

seq1  GTATTTGACTTTCTATGCCTAATTTCACTTATCTTGAATGATTTGAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGACTTTCTATGCCTAATTTCACTTATCTTGAATGATTTGAGAAT  400

seq1  TC  402
      ||
seq2  TC  402

seq1: chr13_115999146_116000274
seq2: B6Ng01-149K01.g_66_1188

seq1  GAATTCTACATTGTGTAGAGATTTGGTAGAGGCTTTTAGAACCTCTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTGTGTAGAGATTTGGTAGAGGCTTTTAGAACCTCTGCTC  50

seq1  TTACACTTTGTTTTGAACTTACAGTTACTTGAAAATAATCAGCAAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTTGTTTTGAACTTACAGTTACTTGAAAATAATCAGCAAGGAAA  100

seq1  GACCTATCATTGCACACATAATTGAATGTTTTGGGTTTCACTTTGTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATCATTGCACACATAATTGAATGTTTTGGGTTTCACTTTGTATCT  150

seq1  TCTAATGAATTAGTAATATCAACAAGATCACAAATTGTCTGGCACCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAATTAGTAATATCAACAAGATCACAAATTGTCTGGCACCTCCT  200

seq1  CCTCCTCCTGGCCCATTTTCTCTAACAGCAAATTAGATGTTGCATCGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTGGCCCATTTTCTCTAACAGCAAATTAGATGTTGCATCGATT  250

seq1  ATGATTCTTCAACTAAAACTATCTTGACATGCTAAATTATTTTTCAGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTTCAACTAAAACTATCTTGACATGCTAAATTATTTTTCAGCCG  300

seq1  TTTAGTCATTCATTCTGTCAATCAATACGTCTTTACTGAGAGTCTATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCATTCATTCTGTCAATCAATACGTCTTTACTGAGAGTCTATGAT  350

seq1  AAATCAACCACTTTGTTTGTAATTGTAGCTATGGGGATGATAATTGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACCACTTTGTTTGTAATTGTAGCTATGGGGATGATAATTGTTCC  400

seq1  TGGTCTTAATATACCCTTTTTTTTCAGAATCAAAAGCAGTTATGAGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTAATATACCCTTTTTTTTCAGAATCAAAAGCAGTTATGAGTATA  450

seq1  TTTAGGCTGGCTGAGCTTATCAATTCAGTATACTGCATCTGCTTGCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCTGGCTGAGCTTATCAATTCAGTATACTGCATCTGCTTGCCACA  500

seq1  TTATTAATACCATGTTTTTATTCAGGGTGTGTCTAAGAGTACTCTGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATACCATGTTTTTATTCAGGGTGTGTCTAAGAGTACTCTGATCT  550

seq1  TTTCAAATCAATGAGGAGATATCACTCTTAAATATAAACTCCATGATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATCAATGAGGAGATATCACTCTTAAATATAAACTCCATGATCTG  600

seq1  TTAATTTTTGAGGATGTGAGAAATATGGGGAAATACTAGTATTGCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTGAGGATGTGAGAAATATGGGGAAATACTAGTATTGCAGTCA  650

seq1  GCGCAGATTACCCAAGATAAGCATTACAACAGAATGAGCCTCTAAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGATTACCCAAGATAAGCATTACAACAGAATGAGCCTCTAAGAAAC  700

seq1  AGTATGACTTATCTCTTCCCGTTGACTGAAGATGCTCATCTAAACCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGACTTATCTCTTCCCGTTGACTGAAGATGCTCATCTAAACCACAG  750

seq1  TTGACAAGGGATGGCATTCCATTCAGTTCTTAGGTGATGGCACACTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGGGATGGCATTCCATTCAGTTCTTAGGTGATGGCACACTCTCT  800

seq1  TTCTAACCTAAAGTAACCTTATTGGTTCACCTGTGGATATACTAAACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCTAAAGTAACCTTATTGGTTCACCTGTGGATATACTAAACTAT  850

seq1  ATGCCAAACTTAAATTGGATAGATATA-GGATGAAAAGAATTTATATTTA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGCCAAACTTAAATTGGATAGATATAGGGATGAAAAGAATTTATATTTA  900

seq1  TTTTAAGAGTGTGCCCAGAAGACTAAAACAGAAGACAACGTCAAACTAGT  949
      |||| ||||||||||||||||||| |||||| |||| |||||||||||||
seq2  TTTTTAGAGTGTGCCCAGAAGACT-AAACAG-AGAC-ACGTCAAACTAGT  947

seq1  TTCTTTGTGATTTAACACATTTATTCATATGTCTGTTTTGTAAGTATGAA  999
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGATTTAA-ACATTTATTCATATGTCTGTTTTGTAAGTATGAA  996

seq1  TTGCTGATTCAGAAACCAGAAGTTGTGGTGAAGTTGAGGCTGTGGCTAT-  1048
      ||||||||||||||| ||||||||||||||||||||| ||||||||||| 
seq2  TTGCTGATTCAGAAA-CAGAAGTTGTGGTGAAGTTGA-GCTGTGGCTATA  1044

seq1  ATCTAGATCTGGGCTTGTACATCTGGGTTTCCAAGTTTCAGACTGGAACT  1098
      |||||||||||||| ||||||||||||||||| || |||| |||||||||
seq2  ATCTAGATCTGGGC-TGTACATCTGGGTTTCC-AGGTTCA-ACTGGAACT  1091

seq1  GAGTTGGGGTTTGTTTTGTAG-AGGTGGGGGA  1129
      ||| ||||| ||  ||||||| ||| ||||||
seq2  GAGGTGGGGATTTGTTTGTAGAAGGGGGGGGA  1123