BAC Information

Click to search

BAC

Clone NameB6Ng01-149N04
Chromosome13 (Build37)
Map Location 55,993,574 - 56,136,381
singlet/doubletdoublet
Overlap genenone
Upstream geneUnc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1
Downstream geneH2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149N04.bB6Ng01-149N04.g
ACCDH946059DH946060
length1,0161,114
definitionDH946059|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N04, 5' end.DH946060|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,993,574 - 55,994,595)(56,135,262 - 56,136,381)
sequence
gaattcatggcttttcctctgcttcaccacagtgcatatctatatcttgg
aggggcaaacaagctcagagtcttggtccaatagccctcaatgaagtggc
aagatcctgggcaagaaagtggtggtctcctggacagagttgccatggtc
aagtgatttttttgaggaggaaatgtgcagccattattcaatatctgctg
taagccaggtattgggtaacacactggcccatttagacaccatcttcctt
tgtgggttaggatgtccacttgcagaagaggaaatgaaagcaaagaacat
tcctggactgcagccccagtccccaagagcgtcttataatttggaggccc
gaatcctgggtgtacgaggcaaagagccttgatttcatgtgtagacatgt
gcaaagcatgttggctagaggaagtggtctgtgttcactgactcccgagg
gtggaggggaatgggaagcctgcaaagaggcatagaccggggcgggtact
ggggctagcctgcactacagctcatgcatattcctttccaattttgagct
caagaacatctcattggaaactggagatcagccgcagttagcatcatgtc
aggggatgatctgatttttctgagagctggctgttaaacacagactagta
catggttggataggacgcattgcactcttctggattaaacaaatggggag
aagagagagcctagcgagaaatatcttacgtggagctgtgcagtggagga
tttgctcatggcagaggataccagaggggactgagctactaagaccagga
acagtacattagctggacatggccaacactcagtgttttgttttccttat
aatggggcttttggtgaggacagtagcagattcggcatcagagaaaacag
ggatggggtgagggaaggcagggaccgtcttccaaaaatcttcgactgac
tcgggaaatctcacgcaccatggcaggcaggagctcgaaatcaggttgca
actggcatgcctgggc
gaattctttctgatgaaatacaccatcaactttaaaagtcttccgtattc
ttcccatgttgagaggaactttgaaaacatgggcttgagttgcttcttgt
ttgctgtgagctgttgtcttgtgaaaacttctttttctgtgaacttcttc
attactcaaatctgcacgtatttctccactgggctttttaaaaactcaat
ctttagagggtacttaaaaacccagaaaattaataaatttggaaccaagt
tatgcgcctgagtattctaactgccacatggaaagggcatcgcccacaag
caggaatgaatgcggtaagaatggtagcgccatcaccaacattgaccaac
tgtatgagcctagtgagctgcctgttcttaggtcccttaccttgaccttg
agaggaagcaaaatgatgtatggacaaaggaggtaatggtctaaggaggt
taagttgtctgcctagggttacctagcagagctaagacattggctcatct
gattccagagtctgagaagaatgtctaccatttagttcccagtgactggc
aagaagggactgaaggtcacgttggtcactccaaatcaaacgtatcctga
tactctggtaacgcaaacccacagcccagcacatgggccccaaaggcagg
gggaactacgtgtcttattattccacatctgtcctgctccctgatataaa
gcaagtattcaataaatggtggccgtgtgaagagtgaatggatggacatg
catcttcccaatggaccatgagctcctcaaaggctgacaccaggcttgac
cttccaagaccccaggcttgaccttccaggaccccaggcttaaccttgac
ctcccaggaccaattcatgctgtgagacaagatgacagtgctggatgttg
ggtacagtatgccttgctctagtcaaacctcttcctgccagcaccagccc
agtcacatgggaagaaagtctatgaaccctgagaaacactctgctcaatc
tgggcacgccaccatgaggaaatcatctgtctccaacacaagctgttagc
cggtatgcccgttactgtctccacatggatgaaaaagtccagaggggtga
caaggcattcgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55993574_55994595
seq2: B6Ng01-149N04.b_47_1062

seq1  GAATTCATGGCTTTTCCTCTGCTTCACCACAGTGCATATCTATATCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCTTTTCCTCTGCTTCACCACAGTGCATATCTATATCTTGG  50

seq1  AGGGGCAAACAAGCTCAGAGTCTTGGTCCAATAGCCCTCAATGAAGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAAACAAGCTCAGAGTCTTGGTCCAATAGCCCTCAATGAAGTGGC  100

seq1  AAGATCCTGGGCAAGAAAGTGGTGGTCTCCTGGACAGAGTTGCCATGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTGGGCAAGAAAGTGGTGGTCTCCTGGACAGAGTTGCCATGGTC  150

seq1  AAGTGATTTTTTTGAGGAGGAAATGTGCAGCCATTATTCAATATCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTTTTTTGAGGAGGAAATGTGCAGCCATTATTCAATATCTGCTG  200

seq1  TAAGCCAGGTATTGGGTAACACACTGGCCCATTTAGACACCATCTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGGTATTGGGTAACACACTGGCCCATTTAGACACCATCTTCCTT  250

seq1  TGTGGGTTAGGATGTCCACTTGCAGAAGAGGAAATGAAAGCAAAGAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTAGGATGTCCACTTGCAGAAGAGGAAATGAAAGCAAAGAACAT  300

seq1  TCCTGGACTGCAGCCCCAGTCCCCAAGAGCGTCTTATAATTTGGAGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGACTGCAGCCCCAGTCCCCAAGAGCGTCTTATAATTTGGAGGCCC  350

seq1  GAATCCTGGGTGTACGAGGCAAAGAGCCTTGATTTCATGTGTAGACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGGGTGTACGAGGCAAAGAGCCTTGATTTCATGTGTAGACATGT  400

seq1  GCAAAGCATGTTGGCTAGAGGAAGTGGTCTGTGTTCACTGACTCCCGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCATGTTGGCTAGAGGAAGTGGTCTGTGTTCACTGACTCCCGAGG  450

seq1  GTGGAGGGGAATGGGAAGCCTGCAAAGAGGCATAGACCGGGGCGGGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGGGAATGGGAAGCCTGCAAAGAGGCATAGACCGGGGCGGGTACT  500

seq1  GGGGCTAGCCTGCACTACAGCTCATGCATATTCCTTTCCAATTTTGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAGCCTGCACTACAGCTCATGCATATTCCTTTCCAATTTTGAGCT  550

seq1  CAAGAACATCTCATTGGAAACTGGAGATCAGCCGCAGTTAGCATCATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACATCTCATTGGAAACTGGAGATCAGCCGCAGTTAGCATCATGTC  600

seq1  AGGGGATGATCTGATTTTTCTGAGAGCTGGCTGTTAAACACAGACTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATGATCTGATTTTTCTGAGAGCTGGCTGTTAAACACAGACTAGTA  650

seq1  CATGGTTGGATAGGACGCATTGCACTCTTCTGGATTAAACAAATGGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGGATAGGACGCATTGCACTCTTCTGGATTAAACAAATGGGGAG  700

seq1  AAGAGAGAGCCTAGCGAGAAATATCTTACGTGGAGCTGTGCAGTGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGCCTAGCGAGAAATATCTTACGTGGAGCTGTGCAGTGGAGGA  750

seq1  TTTGCTCATGGCAGAGGATACCAGAGGGGACTGAGCTACTAAGACCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCATGGCAGAGGATACCAGAGGGGACTGAGCTACTAAGACCAGGA  800

seq1  ACAGTACATTAGCTGGACATGGCCAACACTCAGTG-TTTGTTTTCCTTAT  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACAGTACATTAGCTGGACATGGCCAACACTCAGTGTTTTGTTTTCCTTAT  850

seq1  AATGGGGCTTTTGGTGAGGACAGTAGCAGATTCGGCATCAGAGAAAACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGCTTTTGGTGAGGACAGTAGCAGATTCGGCATCAGAGAAAACAG  900

seq1  GGATGGGGTGAGGGAAGGCCAGGGACCCGTC-TCCAAAAATCTTCAGACT  948
      |||||||||||||||||| |||||| ||||| ||||||||||||| ||||
seq2  GGATGGGGTGAGGGAAGG-CAGGGA-CCGTCTTCCAAAAATCTTC-GACT  947

seq1  GACTCGGGAAGTCTCACCGCACCATGGCAGGCGATGAGCTCAGAGAATCA  998
      |||||||||| ||||| ||||||||||||||| | |||||| || |||||
seq2  GACTCGGGAAATCTCA-CGCACCATGGCAGGC-AGGAGCTC-GA-AATCA  993

seq1  AGTTGCAACCTGCAATGCCTGGGC  1022
       ||||||| |||  ||||||||||
seq2  GGTTGCAA-CTGGCATGCCTGGGC  1016

seq1: chr13_56135262_56136381
seq2: B6Ng01-149N04.g_67_1180 (reverse)

seq1  CCTCGAATGGCTTTGTCACCCCTCTGGGCCTTTTTCCATCATTGGTGGAG  50
      |||||||| || ||||||||||||||| |  |||| ||||  | ||||||
seq2  CCTCGAAT-GCCTTGTCACCCCTCTGGAC--TTTTTCATCCAT-GTGGAG  46

seq1  ACAGTAACGGGGCATA-CGGCGTACAGC-TGTGTTGGGAGACAGAATGAT  98
      |||||||| ||||||| ||||  ||||| |||||| |||||||| |||||
seq2  ACAGTAAC-GGGCATACCGGCTAACAGCTTGTGTT-GGAGACAG-ATGAT  93

seq1  TTCCTCATGGTGGCGTGCCCAGGATTGAGCAGAGTGTTTCTCAGGGTTCA  148
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCCTCATGGTGGCGTGCCCA-GATTGAGCAGAGTGTTTCTCAGGGTTCA  142

seq1  TAGACTTTC-TCCCATGTGACTGGGCTGGTGCTGGCAGGAAGAGGTTTGA  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTCTTCCCATGTGACTGGGCTGGTGCTGGCAGGAAGAGGTTTGA  192

seq1  CTAGAGCAAGGCATACTGTACCCAACATCCAGCACTGTCATCTTTGTCTC  247
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTAGAGCAAGGCATACTGTACCCAACATCCAGCACTGTCATC-TTGTCTC  241

seq1  ACAGCATGAATTGGTCCTGGGAGGTCAAGGTTAAGCCTGGGGTCCTGGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGAATTGGTCCTGGGAGGTCAAGGTTAAGCCTGGGGTCCTGGAA  291

seq1  GGTCAAGCCTGGGGTCTTGGAAGGTCAAGCCTGGTGTCAGCCTTTGAGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGCCTGGGGTCTTGGAAGGTCAAGCCTGGTGTCAGCCTTTGAGGA  341

seq1  GCTCATGGTCCATTGGGAAGATGCATGTCCATCCATTCACTCTTCACACG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGTCCATTGGGAAGATGCATGTCCATCCATTCACTCTTCACACG  391

seq1  GCCACCATTTATTGAATACTTGCTTTATATCAGGGAGCAGGACAGATGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATTTATTGAATACTTGCTTTATATCAGGGAGCAGGACAGATGTG  441

seq1  GAATAATAAGACACGTAGTTCCCCCTGCCTTTGGGGCCCATGTGCTGGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATAAGACACGTAGTTCCCCCTGCCTTTGGGGCCCATGTGCTGGGC  491

seq1  TGTGGGTTTGCGTTACCAGAGTATCAGGATACGTTTGATTTGGAGTGACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTTGCGTTACCAGAGTATCAGGATACGTTTGATTTGGAGTGACC  541

seq1  AACGTGACCTTCAGTCCCTTCTTGCCAGTCACTGGGAACTAAATGGTAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGACCTTCAGTCCCTTCTTGCCAGTCACTGGGAACTAAATGGTAGA  591

seq1  CATTCTTCTCAGACTCTGGAATCAGATGAGCCAATGTCTTAGCTCTGCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCTCAGACTCTGGAATCAGATGAGCCAATGTCTTAGCTCTGCTA  641

seq1  GGTAACCCTAGGCAGACAACTTAACCTCCTTAGACCATTACCTCCTTTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCCTAGGCAGACAACTTAACCTCCTTAGACCATTACCTCCTTTGT  691

seq1  CCATACATCATTTTGCTTCCTCTCAAGGTCAAGGTAAGGGACCTAAGAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACATCATTTTGCTTCCTCTCAAGGTCAAGGTAAGGGACCTAAGAAC  741

seq1  AGGCAGCTCACTAGGCTCATACAGTTGGTCAATGTTGGTGATGGCGCTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTCACTAGGCTCATACAGTTGGTCAATGTTGGTGATGGCGCTAC  791

seq1  CATTCTTACCGCATTCATTCCTGCTTGTGGGCGATGCCCTTTCCATGTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTACCGCATTCATTCCTGCTTGTGGGCGATGCCCTTTCCATGTGG  841

seq1  CAGTTAGAATACTCAGGCGCATAACTTGGTTCCAAATTTATTAATTTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGAATACTCAGGCGCATAACTTGGTTCCAAATTTATTAATTTTCT  891

seq1  GGGTTTTTAAGTACCCTCTAAAGATTGAGTTTTTAAAAAGCCCAGTGGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTAAGTACCCTCTAAAGATTGAGTTTTTAAAAAGCCCAGTGGAG  941

seq1  AAATACGTGCAGATTTGAGTAATGAAGAAGTTCACAGAAAAAGAAGTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACGTGCAGATTTGAGTAATGAAGAAGTTCACAGAAAAAGAAGTTTT  991

seq1  CACAAGACAACAGCTCACAGCAAACAAGAAGCAACTCAAGCCCATGTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACAACAGCTCACAGCAAACAAGAAGCAACTCAAGCCCATGTTTT  1041

seq1  CAAAGTTCCTCTCAACATGGGAAGAATACGGAAGACTTTTAAAGTTGATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCCTCTCAACATGGGAAGAATACGGAAGACTTTTAAAGTTGATG  1091

seq1  GTGTATTTCATCAGAAAGAATTC  1120
      |||||||||||||||||||||||
seq2  GTGTATTTCATCAGAAAGAATTC  1114