BAC Information

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BAC

Clone NameB6Ng01-149P16
Chromosome13 (Build37)
Map Location 71,050,522 - 71,217,189
singlet/doubletdoublet
Overlap genenone
Upstream geneEG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149P16.bB6Ng01-149P16.g
ACCDH946174DH946175
length1,1521,117
definitionDH946174|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P16, 5' end.DH946175|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,216,054 - 71,217,189)(71,050,522 - 71,051,637)
sequence
gaattctgagttgctctgatctatgaccaaatacccagagccaggcaaag
gcagtgatccccagctaagcaaggagagcactggtcacatcctggggggt
gaagatgggagggctggtctgctccttactccttacaaggccatcttctc
tgtgaacccacttccctggcctggataactcatggctgtacatcaggagg
acctctacatactcaagctagcctggtccatgaagagccctgtctcacat
tacaaatagcaaccaaccaaacaaaggctctcagtttatgggaagatctt
cctcactgtggagtcctcccaggacctctgttcctttctaaaaggtttgc
ctgtggcgcagagcattggagagtctcctccatcgctctggatggaggtg
gaatgactgccacctcttcagttggtctacttgggggtgctttttgcaca
cagcctgagaacaggacactcagcttgggttggagatatttattctcttt
cctaaattggccacagatactggcagcttcactgtatagagaaacaggcc
agtaagtctcaaaagaccaaaacgatacttgctgaacactgaacctagtc
atctagtagttgaacaaacagagcttaaagtagattctttcagcaacaag
ctgtatgtgcaaagaaaggacatattaaggcaagaccccagcactgtgat
ggacatacagaggcacatgtgacctccctctattccatcctgttttgcag
gtaagtaaccatgattttagttcctgaacaaattccatgttctcaccaag
cagtgcggcttcaccagctgagtttttccaggggaagtcgttgttttgtt
tcgtctgtctgattgttttcacagccctacaacagatccttctttcctaa
aggctccagccccacgttccagttgccagctgtatttatcccatattggt
ctccatattctccagtgtcacagactggactcttatctgaagagtgacaa
gtttcccacaaacctcctcagatctggttcaaaccttgccatcatgagtc
ttaatattctggcctccgtggtgcgaaatatgcctctggagtctcatttt
aattctgaattaactctgaaggatttctcccccggtcccacatttttatt
ga
gaattccaaaacttcttcaggccatgtgctctagccatctacccgtgtat
ccaccccattacccaactctcactgttcaatgctttgatgagtttatcct
acaatgatgctaagatgattgtctgtacattcggaggcaatggatctttc
aggtcaccgaacagaaatgtattctgagatggctcctttcatgaactaga
caaaacagaatgaaggtctccatttagcaggcatgaggacatctttgtga
gctacctgatgctatagggatgggtaaggggaacttttagaatatgaagt
ggagatttaaaaaaaagcctactaatgttaaagtttccacaaggctgacc
actgggttagaactcagtgactgtggggatttgggatgcagcagacctat
agccaaatggtcttgtgttctctattgaatcgaatctaccatactttcaa
ctatcagataaaacccaaatataccaccagcaatatatacccctaccaat
atatacctctacccaaatatacctctaccaatgcagaggggaagaccaaa
aagcccaggtttttgcactttcttggaatgtgcctagctgtgttctgaac
aatctatttatagaatgactctttatatcctgaaaaatgaaaagcttcca
cagagacgtttccatgtcagaacacgttatttgaagtaatttgaatccat
gttcccagtcagtggctcctcacatctggctcagcatcacttgtctctga
ctcctttggaggtgaaggctctatttaaccttaacatgaaggctggctaa
ttggtctttgccatgactttacactagatgtttcacattctacttaagac
ctgaaagtagaagggaacctgagttctgttgtttagaaaaagagagtctg
taggctataatctgatacacttcactgcttggtatgaagactgtacgctt
taaaaataagttaacttcctaaaaatggttcactttggatagatattttt
tacataaggtttaaggtacaggagacataacttcatactgaacctaccac
aattgtacagcttggctcaaggccaagagaaacttaagaatggaaaacct
tttattcttaatattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71216054_71217189
seq2: B6Ng01-149P16.b_48_1199 (reverse)

seq1  TCAATAAAAATGT-GGAC--GAGGAGATACATTTCAAAGTAAATTTTGAA  47
      ||||||||||||| ||||  | ||||| |   |||| ||| ||||  |||
seq2  TCAATAAAAATGTGGGACCGGGGGAGAAATCCTTCAGAGTTAATTCAGAA  50

seq1  TTAAAATGA-ACTCCAGA-GCATATTTCGCA-CAC-GAGG-CAG-ATATA  91
      ||||||||| |||||||| |||||||||||| ||| |||| ||| |||| 
seq2  TTAAAATGAGACTCCAGAGGCATATTTCGCACCACGGAGGCCAGAATATT  100

seq1  AAGACTCATGAT-GCCAGGTTTGGA-CAGATCTGAGGAGGTTTGTGGGAA  139
      |||||||||||| || ||||||| | ||||||||||||||||||||||||
seq2  AAGACTCATGATGGCAAGGTTTGAACCAGATCTGAGGAGGTTTGTGGGAA  150

seq1  AC-TGTCACTCTTCAGATAAGAGTCCAGTCCTGTGACACTGGAGAATATG  188
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTTGTCACTCTTCAGATAAGAGTCCAGT-CTGTGACACTGGAGAATATG  199

seq1  GAGACCAATATGGGATAAATACAGCTGGCAACTGG-ACGT-GGGCTGGAG  236
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  GAGACCAATATGGGATAAATACAGCTGGCAACTGGAACGTGGGGCTGGAG  249

seq1  CCTTTAGG-AAGGAGGATCTGTTGTAGGGCTGTGAAAACAATCAGACAGA  285
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGGAAAGAAGGATCTGTTGTAGGGCTGTGAAAACAATCAGACAGA  299

seq1  CGAA--CAAACAACGACTTCCCCTGGAAAAACTCAGCTGGTGAAGCCGCA  333
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACAAAACAACGACTTCCCCTGGAAAAACTCAGCTGGTGAAGCCGCA  349

seq1  CTGCTTGGTGAGAACATGGAATTTGTTCAGGAACTAAAATCATGGTTACT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGTGAGAACATGGAATTTGTTCAGGAACTAAAATCATGGTTACT  399

seq1  TACCTGCAAAACAGGATGGAATAGAGGGAGGTCACATGTGCCTCTGTATG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCAAAACAGGATGGAATAGAGGGAGGTCACATGTGCCTCTGTATG  449

seq1  TCCATCACAGTGCTGGGGTCTTGCCTTAATATGTCCTTTCTTTGCACATA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACAGTGCTGGGGTCTTGCCTTAATATGTCCTTTCTTTGCACATA  499

seq1  CAGCTTGTTGCTGAAAGAATCTACTTTAAGCTCTGTTTGTTCAACTACTA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTTGCTGAAAGAATCTACTTTAAGCTCTGTTTGTTCAACTACTA  549

seq1  GATGACTAGGTTCAGTGTTCAGCAAGTATCGTTTTGGTCTTTTGAGACTT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTAGGTTCAGTGTTCAGCAAGTATCGTTTTGGTCTTTTGAGACTT  599

seq1  ACTGGCCTGTTTCTCTATACAGTGAAGCTGCCAGTATCTGTGGCCAATTT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTGTTTCTCTATACAGTGAAGCTGCCAGTATCTGTGGCCAATTT  649

seq1  AGGAAAGAGAATAAATATCTCCAACCCAAGCTGAGTGTCCTGTTCTCAGG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGAATAAATATCTCCAACCCAAGCTGAGTGTCCTGTTCTCAGG  699

seq1  CTGTGTGCAAAAAGCACCCCCAAGTAGACCAACTGAAGAGGTGGCAGTCA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCAAAAAGCACCCCCAAGTAGACCAACTGAAGAGGTGGCAGTCA  749

seq1  TTCCACCTCCATCCAGAGCGATGGAGGAGACTCTCCAATGCTCTGCGCCA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCCATCCAGAGCGATGGAGGAGACTCTCCAATGCTCTGCGCCA  799

seq1  CAGGCAAACCTTTTAGAAAGGAACAGAGGTCCTGGGAGGACTCCACAGTG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAACCTTTTAGAAAGGAACAGAGGTCCTGGGAGGACTCCACAGTG  849

seq1  AGGAAGATCTTCCCATAAACTGAGAGCCTTTGTTTGGTTGGTTGCTATTT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATCTTCCCATAAACTGAGAGCCTTTGTTTGGTTGGTTGCTATTT  899

seq1  GTAATGTGAGACAGGGCTCTTCATGGACCAGGCTAGCTTGAGTATGTAGA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTGAGACAGGGCTCTTCATGGACCAGGCTAGCTTGAGTATGTAGA  949

seq1  GGTCCTCCTGATGTACAGCCATGAGTTATCCAGGCCAGGGAAGTGGGTTC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCCTGATGTACAGCCATGAGTTATCCAGGCCAGGGAAGTGGGTTC  999

seq1  ACAGAGAAGATGGCCTTGTAAGGAGTAAGGAGCAGACCAGCCCTCCCATC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAGATGGCCTTGTAAGGAGTAAGGAGCAGACCAGCCCTCCCATC  1049

seq1  TTCACCCCCCAGGATGTGACCAGTGCTCTCCTTGCTTAGCTGGGGATCAC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCCCCAGGATGTGACCAGTGCTCTCCTTGCTTAGCTGGGGATCAC  1099

seq1  TGCCTTTGCCTGGCTCTGGGTATTTGGTCATAGATCAGAGCAACTCAGAA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGCCTGGCTCTGGGTATTTGGTCATAGATCAGAGCAACTCAGAA  1149

seq1  TTC  1136
      |||
seq2  TTC  1152

seq1: chr13_71050522_71051637
seq2: B6Ng01-149P16.g_68_1184

seq1  GAATTCCAAAACTTCTTCAGGCCATGTGCTCTAGCCATCTACCCGTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACTTCTTCAGGCCATGTGCTCTAGCCATCTACCCGTGTAT  50

seq1  CCACCCCATTACCCAACTCTCACTGTTCAATGCTTTGATGAGTTTATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCATTACCCAACTCTCACTGTTCAATGCTTTGATGAGTTTATCCT  100

seq1  ACAATGATGCTAAGATGATTGTCTGTACATTCGGAGGCAATGGATCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATGCTAAGATGATTGTCTGTACATTCGGAGGCAATGGATCTTTC  150

seq1  AGGTCACCGAACAGAAATGTATTCTGAGATGGCTCCTTTCATGAACTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCGAACAGAAATGTATTCTGAGATGGCTCCTTTCATGAACTAGA  200

seq1  CAAAACAGAATGAAGGTCTCCATTTAGCAGGCATGAGGACATCTTTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGAATGAAGGTCTCCATTTAGCAGGCATGAGGACATCTTTGTGA  250

seq1  GCTACCTGATGCTATAGGGATGGGTAAGGGGAACTTTTAGAATATGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTGATGCTATAGGGATGGGTAAGGGGAACTTTTAGAATATGAAGT  300

seq1  GGAGATTTAAAAAAAAGCCTACTAATGTTAAAGTTTCCACAAGGCTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTAAAAAAAAGCCTACTAATGTTAAAGTTTCCACAAGGCTGACC  350

seq1  ACTGGGTTAGAACTCAGTGACTGTGGGGATTTGGGATGCAGCAGACCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTAGAACTCAGTGACTGTGGGGATTTGGGATGCAGCAGACCTAT  400

seq1  AGCCAAATGGTCTTGTGTTCTCTATTGAATCGAATCTACCATACTTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAATGGTCTTGTGTTCTCTATTGAATCGAATCTACCATACTTTCAA  450

seq1  CTATCAGATAAAACCCAAATATACCACCAGCAATATATACCCCTACCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGATAAAACCCAAATATACCACCAGCAATATATACCCCTACCAAT  500

seq1  ATATACCTCTACCCAAATATACCTCTACCAATGCAGAGGGGAAGACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCTCTACCCAAATATACCTCTACCAATGCAGAGGGGAAGACCAAA  550

seq1  AAGCCCAGGTTTTTGCACTTTCTTGGAATGTGCCTAGCTGTGTTCTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGGTTTTTGCACTTTCTTGGAATGTGCCTAGCTGTGTTCTGAAC  600

seq1  AATCTATTTATAGAATGACTCTTTATATCCTGAAAAATGAAAAGCTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTTATAGAATGACTCTTTATATCCTGAAAAATGAAAAGCTTCCA  650

seq1  CAGAGACGTTTCCATGTCAGAACACGTTATTTGAAGTAATTTGAATCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACGTTTCCATGTCAGAACACGTTATTTGAAGTAATTTGAATCCAT  700

seq1  GTTCCCAGTCAGTGGCTCCTCACATCTGGCTCAGCATCACTTGTCTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGTCAGTGGCTCCTCACATCTGGCTCAGCATCACTTGTCTCTGA  750

seq1  CTCCTTTGGAGGTGAAGGCTCTATTTAACCTTAACATGAAGGCTGGCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGGAGGTGAAGGCTCTATTTAACCTTAACATGAAGGCTGGCTAA  800

seq1  TTGGTCTTTGCCATGACTTTACACTAGATGTTTCACATTCTACTTAAGAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGGTCTTTGCCATGACTTTACACTAGATGTTTCACATTCTACTTAAG-A  849

seq1  CCTGAAGGTAGAAGGGAACCTGAGTTCTGTTGTCTAGAAAAAGAGAGTCT  900
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTGAAAGTAGAAGGGAACCTGAGTTCTGTTGTTTAGAAAAAGAGAGTCT  899

seq1  GTAGGCTAT-ATCTGATACCACTTCACTGCTTGGTATGAAGACTGTACGC  949
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  GTAGGCTATAATCTGATA-CACTTCACTGCTTGGTATGAAGACTGTACGC  948

seq1  TTTAAAAATAAGTAAACTTCCTAAAAATGGTTCCACTTGGATAGATA-TT  998
      ||||||||||||| |||||||||||||||||||   ||||||||||| ||
seq2  TTTAAAAATAAGTTAACTTCCTAAAAATGGTTCACTTTGGATAGATATTT  998

seq1  TTTACATAGGTTTAAAGGTACCAGGAGAACATAACTCAATACTGAACCTA  1048
      |||||||| | || |||||| |||||| ||||||||  ||||||||||||
seq2  TTTACATAAGGTTTAAGGTA-CAGGAG-ACATAACTTCATACTGAACCTA  1046

seq1  CCACAATTGTACAGCTTGGCTCAAAGCCAAG-GAAACTTAAG-ATGG-AA  1095
      |||||||||||||||||||||||| |||||| |||||||||| |||| ||
seq2  CCACAATTGTACAGCTTGGCTCAAGGCCAAGAGAAACTTAAGAATGGAAA  1096

seq1  ACACTTTATTCTTAATATTGG  1116
      ||  |||||||||||||||||
seq2  ACCTTTTATTCTTAATATTGG  1117