BAC Information

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BAC

Clone NameB6Ng01-149P17
Chromosome6 (Build37)13 (Build37)
Map Location 8,253,256 - 8,254,29363,128,522 - 63,128,571
singlet/doubletsingletsinglet
Overlap geneLOC100036521
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3
Downstream geneLOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149P17.bB6Ng01-149P17.g
ACCDH946176DH946177
length1,152371
definitionDH946176|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P17, 5' end.DH946177|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,253,256 - 8,254,293)(63,128,522 - 63,128,571)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcggggaaaa
aaaaattatagacaaaaacttccctaaccgaaagaaagaaatgcccatga
acatacaaaaagcctacagaactctaaatagattggaccagaaaagaaat
tcctcccatcacataataatcaaaacaccaaatgcattaaacaaagaaag
aattttaaaagcagtaagggaaaaaggtcaagtagcatgtaaaggcagac
ctatcagaattatagcagacagttctcaccagagactataaaagctagaa
gatcctgggcagatgtcatacagactctaagagaacacaaatgccagccc
aggctactatacccagcaaaactctcaattaccatagacagagaaaccaa
gatattccatgacaaaaccaaatttacacaatatatttcgataaatccag
ccctacaaaagataatagatggaaaactccagcacaaggagggaaactaa
acaaagcaagaaagtaatccctcaacaaacctgcacaaacataattctac
ctctagcaacaaaaatagcaggaagtaacaatcatttttccttaatatct
cttaatatgaaaactagtattaccaacatatcctaatcgattgaaattca
aaaatatgaggaattagaaatttgttggctgtcatccagtggtctctcta
atttggtaattggagaaataggtccattattgtataatccatatatactt
tctgcttgtttgtaagtgacagtgtcttgctgtgtaccacataatggtct
tgaaatcatgcttctcctatctcagcctattagtaggattgtttatttga
ggtttttacactatactatgattttcagaacagcttgcatattttcaaaa
ttatatatacagccaaaagaaacatagacaattaatctgggaggtggatc
gtagagacgacaagagtgagaaagagaaccttataggttactctttttct
gagatgatgcttttcaaatcatcactgccaatgaaccagaatctcagctt
cactatgttcttatgcaccccttctagcagacaattattcattgggaacc
ggttgattgagtgacttttatgttatagacccatcttcgaccatacacca
tt
cagacttcactgtcccaggtcccagtttctgaaactcttcttccttcctc
cttttttccttttccttttccctttcctttcctttttcctttcctttccc
ttcccttttccctttccctttccctttcccttcccctttcccccttcttt
cccccttctttcccccttccttcttttccccttccttcttttccccttcc
ttcttttccccttccttcttttccccttccttcttttccccttccttctt
ttccccttcttttccccttctttctccccttctccccccttttccccttt
tcccccttttttccccttttcccctttttttccccttttccccttttccc
cttccccttccccttcttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8253256_8254293
seq2: B6Ng01-149P17.b_161_1199

seq1  CTACAGAACTCTAAATAGATTGGACCAGAAAAGAAATTCCTCCCATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAACTCTAAATAGATTGGACCAGAAAAGAAATTCCTCCCATCACA  50

seq1  TAATAATCAAAACACCAAATGCATTAAACAAAGAAAGAATTTTAAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATCAAAACACCAAATGCATTAAACAAAGAAAGAATTTTAAAAGCA  100

seq1  GTAAGGGAAAAAGGTCAAGTAGCATGTAAAGGCAGACCTATCAGAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGAAAAAGGTCAAGTAGCATGTAAAGGCAGACCTATCAGAATTAT  150

seq1  AGCAGACAGTTCTCACCAGAGACTATAAAAGCTAGAAGATCCTGGGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAGTTCTCACCAGAGACTATAAAAGCTAGAAGATCCTGGGCAGA  200

seq1  TGTCATACAGACTCTAAGAGAACACAAATGCCAGCCCAGGCTACTATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATACAGACTCTAAGAGAACACAAATGCCAGCCCAGGCTACTATACC  250

seq1  CAGCAAAACTCTCAATTACCATAGACAGAGAAACCAAGATATTCCATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAACTCTCAATTACCATAGACAGAGAAACCAAGATATTCCATGAC  300

seq1  AAAACCAAATTTACACAATATATTTCGATAAATCCAGCCCTACAAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAATTTACACAATATATTTCGATAAATCCAGCCCTACAAAAGAT  350

seq1  AATAGATGGAAAACTCCAGCACAAGGAGGGAAACTAAACAAAGCAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGGAAAACTCCAGCACAAGGAGGGAAACTAAACAAAGCAAGAAA  400

seq1  GTAATCCCTCAACAAACCTGCACAAACATAATTCTACCTCTAGCAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCCTCAACAAACCTGCACAAACATAATTCTACCTCTAGCAACAAA  450

seq1  AATAGCAGGAAGTAACAATCATTTTTCCTTAATATCTCTTAATATGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGGAAGTAACAATCATTTTTCCTTAATATCTCTTAATATGAAAA  500

seq1  CTAGTATTACCAACATATCCTAATCGATTGAAATTCAAAAATATGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTACCAACATATCCTAATCGATTGAAATTCAAAAATATGAGGAA  550

seq1  TTAGAAATTTGTTGGCTGTCATCCAGTGGTCTCTCTAATTTGGTAATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTTGTTGGCTGTCATCCAGTGGTCTCTCTAATTTGGTAATTGG  600

seq1  AGAAATAGGTCCATTATTGTATAATCCATATATACTTTCTGCTTGTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGGTCCATTATTGTATAATCCATATATACTTTCTGCTTGTTTGT  650

seq1  AAGTGACAGTGTCTTGCTGTGTACCACATAATGGTCTTGAAATCATGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAGTGTCTTGCTGTGTACCACATAATGGTCTTGAAATCATGCTT  700

seq1  CTCCTATCTCAGCCTATTAGTAGGATTGTTTATTTGAGGTTTTTACACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATCTCAGCCTATTAGTAGGATTGTTTATTTGAGGTTTTTACACTA  750

seq1  TACTATGATTTTCAGAACAGCTTGCATA-TTTCAAAATTATATATACAGC  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TACTATGATTTTCAGAACAGCTTGCATATTTTCAAAATTATATATACAGC  800

seq1  CAAAAGAAACATAGACAATTAATCTGGGAGGTGGATCGTAAGAGAACGAC  849
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  CAAAAGAAACATAGACAATTAATCTGGGAGGTGGATCGT-AGAG-ACGAC  848

seq1  AAAGAGTGAGAAAGAGAACCTTATAGGTTACTCTTTTTCTGAGATGAATG  899
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -AAGAGTGAGAAAGAGAACCTTATAGGTTACTCTTTTTCTGAGATG-ATG  896

seq1  CTTTTCAAAATCATCACTGCCAATGAACCAGAATCTCAGCCTCACCTAAT  949
      |||||| ||||||||||||||||||||||||||||||||| ||||   ||
seq2  CTTTTC-AAATCATCACTGCCAATGAACCAGAATCTCAGCTTCAC--TAT  943

seq1  GT--CTATGCCACCCTCTAAGCAGAACCATTATTCATT-GGAACC-GTTG  995
      ||   |||||  ||||   ||||| || |||||||||| |||||| ||||
seq2  GTTCTTATGCACCCCTTCTAGCAG-ACAATTATTCATTGGGAACCGGTTG  992

seq1  A-TGAGTGAC-TTTATG-TATAGA-CCATC-TCAACACACACACCATT  1038
      | |||||||| |||||| |||||| ||||| || || || ||||||||
seq2  ATTGAGTGACTTTTATGTTATAGACCCATCTTCGAC-CATACACCATT  1039

seq1: chr13_63128522_63128571
seq2: B6Ng01-149P17.g_364_408 (reverse)

seq1  -GGGAAAAGGGGGGAAAAGGGGAAAAAAGGGAAAAAAGAAAAAGGGAAAA  49
       || ||||  |||||||||||||||||||||      ||||| |||||||
seq2  GGGAAAAAAAGGGGAAAAGGGGAAAAAAGGG-----GGAAAAGGGGAAAA  45

seq1  A  50
       
seq2  -  45