BAC Information

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BAC

Clone NameB6Ng01-150I02
Chromosome13 (Build37)
Map Location 29,418,092 - 29,419,239
singlet/doubletsinglet
Overlap geneCdkal1
Upstream geneLOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150I02.bB6Ng01-150I02.g
ACCDH946567DH946568
length9881,131
definitionDH946567|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I02, 5' end.DH946568|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagttctatactccattttttattgggttgtttatttt
ttgggaggttagcctcttaagttctttatatattttggatattatctctc
tattagatgtggggttaatgaaaatttttcccccagtctgtaggctgtcc
tattgataatgtccttttgccttatagaagcttttcagttttgtgaggtc
ccatttatcaattcttggtcttagaacctgagccattggagttctgttta
ggaaatcttcccttgtaccaatgagttcaaggctctttcccactttctct
tctattagagtcagtgtatctggttttatattgaggtccttgatccactt
ggatttgagcttggggcaagatggcaaatatggatctattttatttttct
acaaacagactgccaattagaccaacaccatttattgaaaatgctttttt
tttccattgtatatttttggcttctttgtcaaagatcaagtgaccataag
tgtttgggtttatttctgggtcttcagttctattccactgatcaacctga
ctatctctgtaccaataccatgcagttttaccactattgtaaaactctgt
agtatagtttgaagtcaggaatggtgattaccccagaagttcttttattg
ttaagaattgtttttgctatcttgggttttttgttttttccatgtgaaat
tgagaattgttctttccatgcctttgaagaattgtgttgggattttggtg
gggattgtgttgaatctgtaggttgctcttgggaggatggccatttttac
tgtgttaatcctacagatccatgagcataagagttctctccattttctgg
gatcttcgatttctttcatgagagactttaagtctgtcatttagatcttt
cacttgttcgttaaagtacaccagatattcatattatttgggactattgt
gaagggtattgttttctatttccttctcagccattatc

gaattcctataaagacagaaaagaaaaacaatgttcaggaaaaaaaaaat
tcctgcagctgtatcagccatagctcctttcactatagaaacatctggat
gcctgcagggtctaggtaaccccatggttggaatggacaagtctgtttct
tttttccatgattagaacacagtcatgttttttgttttgtttttagactc
catgggagacattttgttcatcaaacacactcttgaaggcagataataca
agatgctctgccgtaggaaggctgagcccacctccagggaggcctaacag
gggtctgagtgaccagagggccccagtccagtgttccctccgtttgcctt
ggtgtgccagacagggaagcctggagaacacggctggaggagagtgcagg
tgagtgagcaccacggcctgctctcgaggaggcatccactgagcaaggct
tctagtctgcctgagctgaaggggggcatgctactcccacggcagcttta
gtatttcaaagcacctgctggctccgttagataagatggttcacattata
cagctcctgtcaaaacaatgcccccatacggcatgaccatccctgctaga
gccaacaggatgtggagatgggacgatcagaggccatgaaggagaggctc
agcagaggcagcgtggcacagttgtccttgaggccataggattctcttgt
gcctccctgagcactctgacaatcctgaacacctctgtttcctgtgtgga
agcggctgctatcctgctgctgactggtctgaataagagctcaggcccta
cactgctgctgtgaaggcagagctgtcttcaatggtggtctttatttgta
ttatttaattaataataaagagtctcattacaggagcagaaagagtgcag
tgataccctgggccgaaagctgcctagatcaggcctggctgaaatggcag
tgtcccattcctgctccctggctgctctatgtcaaactcactaagctcag
tcaacggcagagatcacactatactatggtgctcggtgagaacaaaccca
catacaatcggcaccagagataccggtaggagagactgctgactggaaga
tggctcagccaaactccagtaccttatctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29418092_29419239
seq2: B6Ng01-150I02.g_66_1196

seq1  GAATTCCTATAAAGACAGAAAAGAAAAACAATGTTCAGGAAAAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATAAAGACAGAAAAGAAAAACAATGTTCAGGAAAAAAAAAAT  50

seq1  TCCTGCAGCTGTATCAGCCATAGCTCCTTTCACTATAGAAACATCTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGCTGTATCAGCCATAGCTCCTTTCACTATAGAAACATCTGGAT  100

seq1  GCCTGCAGGGTCTAGGTAACCCCATGGTTGGAATGGACAAGTCTGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGGGTCTAGGTAACCCCATGGTTGGAATGGACAAGTCTGTTTCT  150

seq1  TTTTTCCATGATTAGAACACAGTCATGTTTTTTGTTTTGTTTTTAGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATGATTAGAACACAGTCATGTTTTTTGTTTTGTTTTTAGACTC  200

seq1  CATGGGAGACATTTTGTTCATCAAACACACTCTTGAAGGCAGATAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGACATTTTGTTCATCAAACACACTCTTGAAGGCAGATAATACA  250

seq1  AGATGCTCTGCCGTAGGAAGGCTGAGCCCACCTCCAGGGAGGCCTAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCTGCCGTAGGAAGGCTGAGCCCACCTCCAGGGAGGCCTAACAG  300

seq1  GGGTCTGAGTGACCAGAGGGCCCCAGTCCAGTGTTCCCTCCGTTTGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGAGTGACCAGAGGGCCCCAGTCCAGTGTTCCCTCCGTTTGCCTT  350

seq1  GGTGTGCCAGACAGGGAAGCCTGGAGAACACGGCTGGAGGAGAGTGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCCAGACAGGGAAGCCTGGAGAACACGGCTGGAGGAGAGTGCAGG  400

seq1  TGAGTGAGCACCACGGCCTGCTCTCGAGGAGGCATCCACTGAGCAAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGCACCACGGCCTGCTCTCGAGGAGGCATCCACTGAGCAAGGCT  450

seq1  TCTAGTCTGCCTGAGCTGAAGGGGGGCATGCTACTCCCACGGCAGCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTGCCTGAGCTGAAGGGGGGCATGCTACTCCCACGGCAGCTTTA  500

seq1  GTATTTCAAAGCACCTGCTGGCTCCGTTAGATAAGATGGTTCACATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCAAAGCACCTGCTGGCTCCGTTAGATAAGATGGTTCACATTATA  550

seq1  CAGCTCCTGTCAAAACAATGCCCCCATACGGCATGACCATCCCTGCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGTCAAAACAATGCCCCCATACGGCATGACCATCCCTGCTAGA  600

seq1  GCCAACAGGATGTGGAGATGGGACGATCAGAGGCCATGAAGGAGAGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGGATGTGGAGATGGGACGATCAGAGGCCATGAAGGAGAGGCTC  650

seq1  AGCAGAGGCAGCGTGGCACAGTTGTCCTTGAGGCCATAGGATTCTCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGCAGCGTGGCACAGTTGTCCTTGAGGCCATAGGATTCTCTTGT  700

seq1  GCCTCCCTGAGCACTCTGACAATCCTGAACACCTCTGTTTCCTGTGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTGAGCACTCTGACAATCCTGAACACCTCTGTTTCCTGTGTGGA  750

seq1  AGCGGCTGCTATCCTGCTGCTGACTGGTCTGAATAAGAGCTCAGGCCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTGCTATCCTGCTGCTGACTGGTCTGAATAAGAGCTCAGGCCCTA  800

seq1  CACTGCTGCTGTGAAGGCAGAGCTGTCTTCAATGGTGGTCTTTATTTTGT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACTGCTGCTGTGAAGGCAGAGCTGTCTTCAATGGTGGTCTTTA-TTTGT  849

seq1  ATTATTTTAATTAATAATAAAGAGTCTCATTACAGGAGCAGAAAGAGTGC  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTA-TTTAATTAATAATAAAGAGTCTCATTACAGGAGCAGAAAGAGTGC  898

seq1  AGTGAATACCCTGGGCCGAAAGCTGCCTAGATCAGGCCTGGCTGAAATGG  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTG-ATACCCTGGGCCGAAAGCTGCCTAGATCAGGCCTGGCTGAAATGG  947

seq1  CAGTGTCCCCATTCCTGCTCCCCTGGCCTGCTCTATGTTCAAACTCACTA  1000
      |||||| |||||||||||| |||||| |||||||||| ||||||||||||
seq2  CAGTGT-CCCATTCCTGCT-CCCTGG-CTGCTCTATG-TCAAACTCACTA  993

seq1  AGCTCAGTCAAACGGCAGAGACCACACTATACTATGGTGCTCCGTGAGAA  1050
      ||||||||| ||||||||||| |||||||||||||||||||| |||||||
seq2  AGCTCAGTC-AACGGCAGAGATCACACTATACTATGGTGCTCGGTGAGAA  1042

seq1  CCAAAACCCACATAACAAACCGGCACCCAGAGATACCGTTAGGAGAGAGC  1100
      |  |||||||||||   || ||||| |||||||||||| ||||||||| |
seq2  C--AAACCCACATA--CAATCGGCA-CCAGAGATACCGGTAGGAGAGA-C  1086

seq1  TGCTGACTGAGAAGAT-GCTCAGCCAACACTCACAGTCACCTAATCTAC  1148
      ||||||||| |||||| |||||||||| |||| |||| |||| ||||||
seq2  TGCTGACTG-GAAGATGGCTCAGCCAA-ACTC-CAGT-ACCTTATCTAC  1131


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