BAC Information

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BAC

Clone NameB6Ng01-151I21
Chromosome13 (Build37)
Map Location 106,996,361 - 107,140,204
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf180, Htr1a, EG668025, Olfr717-ps1
Downstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151I21.bB6Ng01-151I21.g
ACCDH947344DH947345
length1,1201,031
definitionDH947344|Mus musculus domesticus DNA, BAC clone: B6Ng01-151I21, 5' end.DH947345|Mus musculus domesticus DNA, BAC clone: B6Ng01-151I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,996,361 - 106,997,478)(107,139,153 - 107,140,204)
sequence
gaattcatgatgttatcaatacaatttcccacaaagtttcaaaaacagta
aaaaagatactgtacttataaaaatgaaatgatggggctggagagatggc
taagagcactgactgctctaccaaaggtcctgagttcagttctcagcaac
cacgtggtggtttgcaaccatctgcaatgggatctgatgttctcttctgg
tgtgactgaagacagctaccatatactcatacacataaaataaattaatt
aattttccaaaagaaaaaagaaatggtagcatcagaaaatttgacattag
ataagcattcccgtcttcacttcttcaatttgactctgtctgtctgacac
caagcagcatcctgaagccatggaagttcacacatcattttgagataaaa
atgcagtgccatccctggtcatcaactattcctaagatcaaactcattaa
ttttgctagaaatgtaaaaggattagaaatgtagaagcatcattccaagt
tctttccattttaaaaattcaaggtgttccactgactgtaagatggtctg
atatcacaatagtaacagatacagggtgcaggaagaaaataaaaatagtt
acatattttcctttcaaagatacttctggatatagcacataataagcagc
actcactctgtgagcaataactaacacgatgcctgtgatgacagagattt
aattttacaactgcagggaccatggacaaagcatatgcccgttcttggca
tgtgtgcactattcacatgaaatatatattttttggacaataggccaaat
tccagatgcagtctgacgagagaccactgtgaagtaaaagcagtgctgct
gtgttgatgtcccgccctggactttgatttctgggtcaagaacatgataa
aaataatgaccaacatgaccagtatgatatctttgtcaacctaataccta
aaattataagtatatgttaagggcattgtatttccctcctcaacactttt
tatgttaaagacacttttgaatgccttgtagagaaggagaccatttttcc
tattttgtatcacttaatgtttaaccaaaaactggggtgtggagacatac
tgatcctagtgaatagaaga
gaattctttggaaagtactagggaaatctttatagttatcataggaaaat
caatcaccggggacatagagtgaattatttgaataacaagactgtaatat
gcaaatttaagattttttgctctctctgcttgctaagctttctcagtcac
tgtgtgagaattcattacctactatgagtatctgtaccctcatgagtaat
agatattttcttggtctcctagatcataatcatcttcagctcagtatgat
ttctagtctcatacatggctaaagtcgcctttccatcttgctgttctgcc
tacatgaatctgaaaattcatggagatcacagagagtgcaatagtaaaca
gtgatgggaaaatacattagcacttatttcttgaagagctgatcatctgg
ttggtaggattgacaaatgtttgattggattatagtatggcacatgctat
gatagagagatgctttgggacccaccaatggagaggaaaggtaccaaagg
ccagtgtggagaagaggactgtaggttcagagataagacatggaacataa
aaattgttctaataaaataatgcaatatgctataataaaattccagtata
ataaaaaacagagagatctaaacataaggttgagagctgtatggaaggaa
gttgtgtttcatgctataggaagtagtgtcgaagactagcaaagatggaa
atccaagtagcacgtggtgaaagggacaacttggttgtagatcagaagag
aatctcttgggcttgtttgaataaccagtgtgcagcttagtcaggtatct
attgtgaggaaaataacttagaaggaagaaggtttatctcatattttaag
gtttaatccgtgatcactagttttagctcaacaggatagtgcattgtgtg
ggtgagtgtacagagaagactgttcacttcatacattcatatgagtagaa
gaagcaggatgatcatttcatgacccgtcagtaccacatcagatgacttg
actacttctactagatccacctaggagtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106996361_106997478
seq2: B6Ng01-151I21.b_35_1155

seq1  GGAATTCATGATGTTATCAATACAATTTCCCACAAAGTTTCAAAAACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCATGATGTTATCAATACAATTTCCCACAAAGTTTCAAAAACAGT  50

seq1  AAAAAAGATACTGTACTTATAAAAATGAAATGATGGGGCTGGAGAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGATACTGTACTTATAAAAATGAAATGATGGGGCTGGAGAGATGG  100

seq1  CTAAGAGCACTGACTGCTCTACCAAAGGTCCTGAGTTCAGTTCTCAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCACTGACTGCTCTACCAAAGGTCCTGAGTTCAGTTCTCAGCAA  150

seq1  CCACGTGGTGGTTTGCAACCATCTGCAATGGGATCTGATGTTCTCTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGGTGGTTTGCAACCATCTGCAATGGGATCTGATGTTCTCTTCTG  200

seq1  GTGTGACTGAAGACAGCTACCATATACTCATACACATAAAATAAATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTGAAGACAGCTACCATATACTCATACACATAAAATAAATTAAT  250

seq1  TAATTTTCCAAAAGAAAAAAGAAATGGTAGCATCAGAAAATTTGACATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCAAAAGAAAAAAGAAATGGTAGCATCAGAAAATTTGACATTA  300

seq1  GATAAGCATTCCCGTCTTCACTTCTTCAATTTGACTCTGTCTGTCTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCATTCCCGTCTTCACTTCTTCAATTTGACTCTGTCTGTCTGACA  350

seq1  CCAAGCAGCATCCTGAAGCCATGGAAGTTCACACATCATTTTGAGATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGCATCCTGAAGCCATGGAAGTTCACACATCATTTTGAGATAAA  400

seq1  AATGCAGTGCCATCCCTGGTCATCAACTATTCCTAAGATCAAACTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTGCCATCCCTGGTCATCAACTATTCCTAAGATCAAACTCATTA  450

seq1  ATTTTGCTAGAAATGTAAAAGGATTAGAAATGTAGAAGCATCATTCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTAGAAATGTAAAAGGATTAGAAATGTAGAAGCATCATTCCAAG  500

seq1  TTCTTTCCATTTTAAAAATTCAAGGTGTTCCACTGACTGTAAGATGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCATTTTAAAAATTCAAGGTGTTCCACTGACTGTAAGATGGTCT  550

seq1  GATATCACAATAGTAACAGATACAGGGTGCAGGAAGAAAATAAAAATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCACAATAGTAACAGATACAGGGTGCAGGAAGAAAATAAAAATAGT  600

seq1  TACATATTTTCCTTTCAAAGATACTTCTGGATATAGCACATAATAAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTTTCCTTTCAAAGATACTTCTGGATATAGCACATAATAAGCAG  650

seq1  CACTCACTCTGTGAGCAATAACTAACACGATGCCTGTGATGACAGAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTCTGTGAGCAATAACTAACACGATGCCTGTGATGACAGAGATT  700

seq1  TAATTTTACAACTGCAGGGACCATGGACAAAGCATATGCCCGTTCTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTACAACTGCAGGGACCATGGACAAAGCATATGCCCGTTCTTGGC  750

seq1  ATGTGTGCACTATTCACATGAAATATATATTTTTTGGACAATAGGCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCACTATTCACATGAAATATATATTTTTTGGACAATAGGCCAAA  800

seq1  TTCCAGATGCAGTCTGACGAGAGACCACTGTGAAGTAAAAGCAGTGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATGCAGTCTGACGAGAGACCACTGTGAAGTAAAAGCAGTGCTGC  850

seq1  TGTGTTGATGTCCCGCCCTGGACTTTGATTTCTGGGTCAAGAACATGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGATGTCCCGCCCTGGACTTTGATTTCTGGGTCAAGAACATGATA  900

seq1  AAAATAATGACCAACATGACCAGTATGATATCTTTGTCAACCTAATACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGACCAACATGACCAGTATGATATCTTTGTCAACCTAATACCT  950

seq1  AAAATTATAAGTAATAATGTTAAGGGCATTGTATTTCCCTCTCAAACACT  1000
      |||||||||||||   |||||||||||||||||||||||||   ||||||
seq2  AAAATTATAAGTA--TATGTTAAGGGCATTGTATTTCCCTCCTCAACACT  998

seq1  TTTTATGTTAAAGACAATTTTGAATGCCTTGTAGAG-AGGAGA-CATTTT  1048
      |||||||||||||||| ||||||||||||||||||| |||||| ||||||
seq2  TTTTATGTTAAAGACACTTTTGAATGCCTTGTAGAGAAGGAGACCATTTT  1048

seq1  TCTTATTTTGTATCACTTAATGTTT-ACCAAAAACT-GTGTGT-GAGACA  1095
      || |||||||||||||||||||||| |||||||||| | |||| ||||||
seq2  TCCTATTTTGTATCACTTAATGTTTAACCAAAAACTGGGGTGTGGAGACA  1098

seq1  TACTGGTCCTAGTGATAAGAAGA  1118
      ||||| |||||||||  ||||||
seq2  TACTGATCCTAGTGAATAGAAGA  1121

seq1: chr13_107139153_107140204
seq2: B6Ng01-151I21.g_68_1098 (reverse)

seq1  TTGACTCTGTAGGTGGGATCTAGTAGAAGTAAGTAAAGTCACTTGAGTGT  50
      |||||||  ||||| ||||||||||||||| ||| ||||||  ||| |||
seq2  TTGACTC-CTAGGT-GGATCTAGTAGAAGT-AGTCAAGTCATCTGA-TGT  46

seq1  GACCTTGAAGGGGTTATTGAAAT-ATCACTCCTTCCTTTCTTCTACTCCT  99
      |    ||| |||  |  |||||| |||| |||| |  ||||||||||| |
seq2  GGTACTGACGGG--TCATGAAATGATCA-TCCTGC--TTCTTCTACTCAT  91

seq1  TATTGAATTCTATGAAGTGAACAGTCTTTCTCTTGTACACTCACCCACCA  149
         |||| | |||||||||||||||| ||||| |||||||||||||| ||
seq2  --ATGAA-TGTATGAAGTGAACAGTC-TTCTC-TGTACACTCACCCA-CA  135

seq1  TAATGCACTATCCCTGTTTGAGCTAAAAACTAGTGATCACGGATTAAACC  199
       |||||||||| |||| ||||||| |||||||||||||||||||||||||
seq2  CAATGCACTAT-CCTG-TTGAGCT-AAAACTAGTGATCACGGATTAAACC  182

seq1  TTTAAAACTATGAGATAAAACCTTTCTTCCTTCTAAGTTATTTTCCTCAC  249
      ||  ||| |||||||||||  | |||||||||||||||||||||||||||
seq2  TT--AAAATATGAGATAAA--CCTTCTTCCTTCTAAGTTATTTTCCTCAC  228

seq1  AATAGATACCTGACTAAGCTGCACACTGGTTATTCAAACAAGCCCAAGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATACCTGACTAAGCTGCACACTGGTTATTCAAACAAGCCCAAGAG  278

seq1  ATTCTCTTCTGATCTACAACCAAGTTGTCCCTTTCACCACGTGCTACTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTCTGATCTACAACCAAGTTGTCCCTTTCACCACGTGCTACTTG  328

seq1  GATTTCCATCTTTGCTAGTCTTCGACACTACTTCCTCTAGCCTGAAACAC  399
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  GATTTCCATCTTTGCTAGTCTTCGACACTACTTCCTATAGCATGAAACAC  378

seq1  AACTTCCTTCCATACAGCTCTCAACCTTATGTTTAGATCTCTCTGTTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTTCCATACAGCTCTCAACCTTATGTTTAGATCTCTCTGTTTTT  428

seq1  TATTATACTGGAATTTTATTATAGCATATTGCATTATTTTATTAGAACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACTGGAATTTTATTATAGCATATTGCATTATTTTATTAGAACAA  478

seq1  TTTTTATGTTCCATGTCTTATCTCTGAACCTACAGTCCTCTTCTCCACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTTCCATGTCTTATCTCTGAACCTACAGTCCTCTTCTCCACAC  528

seq1  TGGCCTTTGGTACCTTTCCTCTCCATTGGTGGGTCCCAAAGCATCTCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTGGTACCTTTCCTCTCCATTGGTGGGTCCCAAAGCATCTCTCT  578

seq1  ATCATAGCATGTGCCATACTATAATCCAATCAAACATTTGTCAATCCTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCATGTGCCATACTATAATCCAATCAAACATTTGTCAATCCTAC  628

seq1  CAACCAGATGATCAGCTCTTCAAGAAATAAGTGCTAATGTATTTTCCCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGATGATCAGCTCTTCAAGAAATAAGTGCTAATGTATTTTCCCAT  678

seq1  CACTGTTTACTATTGCACTCTCTGTGATCTCCATGAATTTTCAGATTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTACTATTGCACTCTCTGTGATCTCCATGAATTTTCAGATTCAT  728

seq1  GTAGGCAGAACAGCAAGATGGAAAGGCGACTTTAGCCATGTATGAGACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGAACAGCAAGATGGAAAGGCGACTTTAGCCATGTATGAGACTA  778

seq1  GAAATCATACTGAGCTGAAGATGATTATGATCTAGGAGACCAAGAAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATACTGAGCTGAAGATGATTATGATCTAGGAGACCAAGAAAATA  828

seq1  TCTATTACTCATGAGGGTACAGATACTCATAGTAGGTAATGAATTCTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACTCATGAGGGTACAGATACTCATAGTAGGTAATGAATTCTCAC  878

seq1  ACAGTGACTGAGAAAGCTTAGCAAGCAGAGAGAGCAAAAAATCTTAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACTGAGAAAGCTTAGCAAGCAGAGAGAGCAAAAAATCTTAAATT  928

seq1  TGCATATTACAGTCTTGTTATTCAAATAATTCACTCTATGTCCCTGGTGA  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCATATTACAGTCTTGTTATTCAAATAATTCACTCTATGTCCCCGGTGA  978

seq1  TTGATTTTCCTATGATAACTATAAAGATTTCCCTAGTACTTTCCAAAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTCCTATGATAACTATAAAGATTTCCCTAGTACTTTCCAAAGAA  1028

seq1  TTC  1052
      |||
seq2  TTC  1031