BAC Information

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BAC

Clone NameB6Ng01-152G23
Chromosome13 (Build37)
Map Location 89,768,650 - 89,769,803
singlet/doubletsinglet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266
Downstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152G23.bB6Ng01-152G23.g
ACCDH948009DH948010
length7011,138
definitionDH948009|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G23, 5' end.DH948010|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggctcatgaaaactaaatgtagttgctatagttgataactgt
acaggaatataatgcctaattacatgacaaaatatgtattacaatacaac
tgtcttgtataatgatgaagtcaagaggagatatttccctcagattttaa
atatgaaaacaatttcttaggactaatctgatcatggattctttatgaga
gttgctattaggtatggggccttggaaagagtagacaggaacctagaata
actgtttcctaagaggtttcatccaggacccagtggaaacaaatgaagag
atccacagccaaacatcaggtagagaacagggagtcttttagaagagtct
gggttaaaactgagtgggctggaggggtcaaggacaccacaaaagaccaa
cagaatcagctaacctgggtctatgggggcttacagaaactgaactgcca
accaaagagcatataagggctggacctaagtcccctacacatttgtagca
gatgtacagcttggtcttcatgtgggtactctaagaattggggtggggcc
tacctggactacctggttggatctcagtgggagagaaagtgcatagtcct
gctgatactagatgtcccaagatggagtggtacggggggggggcttccct
ccctcagagaaggagagagagtaaagggtagagggatttgtgagggtggg
t

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gagagagaccatttataaataagtgtttcatttataggcatacacttata
ttatataaaggtaattatccaggccttctcttgtttgtacgtttactctt
aacaactagatcattcatatatcatatacatatgaatatatattcctatg
acaaagactcatacttagggtagtatattatagtcacattttataatcac
ctgttctcaaccccatcattaggaaaaacagagattggatttaataacta
tatagaaaaataaggaataacaggttgagagaacaataaaatggtgtcag
gatagagatgaatataagttttagggctagaagattttatatttttttct
ggacaaacctgctattctcacgtgagaatgaagaactaaattgctagcct
ttgtttcttcagcaaaatattattggtgtctacctaagccaagaaatatg
atagagaacatacaaagaaagtaaagggaaaagaaatgtcacacctaaac
tagacagaaagaactcagagtacagaggtgagcaagaggggacaagatga
tttgtgttctacataagtgccttgcgagccacagcacagcaactgagaag
acatagggatggcactcctgagggtggagggaaggctatttttagagaca
ttgcttacatttgacatacctggtatatttaatgttcatccttactcact
ttataacttttatctttacattttcataacatttatttattttgaaaaaa
agagaggccaaggacaacttccttcaccataagggtctggggaatgatat
taggggggcggactctgaaagcagagacgaaaattaggacgtggatcagg
gctaaaggagagaaatcagtatttggggccccaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89768650_89769803
seq2: B6Ng01-152G23.g_71_1208

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50

seq1  CTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150

seq1  AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGCAGGCTTGTACAACCACTATGGAAATCAGTCTGGCGGTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAGGCTTGTACAACCACTATGGAAATCAGTCTGGCGGTTCCTCA  250

seq1  GAGAGAGACCATTTATAAATAAGTGTTTCATTTATAGGCATACACTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACCATTTATAAATAAGTGTTTCATTTATAGGCATACACTTATA  300

seq1  TTATATAAAGGTAATTATCCAGGCCTTCTCTTGTTTGTACGTTTACTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAAGGTAATTATCCAGGCCTTCTCTTGTTTGTACGTTTACTCTT  350

seq1  AACAACTAGATCATTCATATATCATATACATATGAATATATATTCCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTAGATCATTCATATATCATATACATATGAATATATATTCCTATG  400

seq1  ACAAAGACTCATACTTAGGGTAGTATATTATAGTCACATTTTATAATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACTCATACTTAGGGTAGTATATTATAGTCACATTTTATAATCAC  450

seq1  CTGTTCTCAACCCCATCATTAGGAAAAACAGAGATTGGATTTAATAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCAACCCCATCATTAGGAAAAACAGAGATTGGATTTAATAACTA  500

seq1  TATAGAAAAATAAGGAATAACAGGTTGAGAGAACAATAAAATGGTGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAAATAAGGAATAACAGGTTGAGAGAACAATAAAATGGTGTCAG  550

seq1  GATAGAGATGAATATAAGTTTTAGGGCTAGAAGATTTTATATTTTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGATGAATATAAGTTTTAGGGCTAGAAGATTTTATATTTTTTTCT  600

seq1  GGACAAACCTGCTATTCTCACGTGAGAATGAAGAACTAAATTGCTAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAACCTGCTATTCTCACGTGAGAATGAAGAACTAAATTGCTAGCCT  650

seq1  TTGTTTCTTCAGCAAAATATTATTGGTGTCTACCTAAGCCAAGAAATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTCAGCAAAATATTATTGGTGTCTACCTAAGCCAAGAAATATG  700

seq1  ATAGAGAACATACAAAGAAAGTAAAGGG-AAAGAAATGTCACACCTAAAC  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAGAGAACATACAAAGAAAGTAAAGGGAAAAGAAATGTCACACCTAAAC  750

seq1  TAGACAGAAAGAACTCAGAGTACAGAGGTGAGCAAGAGGGGACAAGATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGAAAGAACTCAGAGTACAGAGGTGAGCAAGAGGGGACAAGATGA  800

seq1  TTTGTGTTCTACATAAGGTGCCTTGCGAGCCACAGCACAGCAACTGAGAA  849
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  TTTGTGTTCTACATAA-GTGCCTTGCGAGCCACAGCACAGCAACTGAG-A  848

seq1  AGACATAGGGATGGCACTCCTGAGGGGTGGAGGGAAGGCTATTTTTAGAG  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGACATAGGGATGGCACTCCTGA-GGGTGGAGGGAAGGCTATTTTTAGAG  897

seq1  ACATTGCTTACATTTTGACATACCTGGTTATATTTTAATGTTCATCTTTA  949
      |||||||||||| |||||||||||||| |||| ||||||||||||| |||
seq2  ACATTGCTTACA-TTTGACATACCTGG-TATA-TTTAATGTTCATCCTTA  944

seq1  CTCAACTTTATAACTTTTATTCTTACATTTTCATTACATTCTATTTATTT  999
      ||| ||||||||||||||||  |||||||||||| ||||| |||||||||
seq2  CTC-ACTTTATAACTTTTATCTTTACATTTTCATAACATT-TATTTATTT  992

seq1  TGAAAGAGAGAGAGGCCAAAGGACAACTTCTTCTACCATATGGGTCCTGG  1049
      ||||| | ||||||||| |||||||||||| |  |||||| |||| ||||
seq2  TGAAAAAAAGAGAGGCC-AAGGACAACTTCCTTCACCATAAGGGT-CTGG  1040

seq1  GAATTGAACTCAGGTGGTCAGACTTCTAAAAGCAGAGACTGAAACATCAA  1099
      | | |||  | ||| || | ||| ||| ||||||||||| |||| || | 
seq2  GGAATGATATTAGGGGGGCGGAC-TCTGAAAGCAGAGAC-GAAA-ATTAG  1087

seq1  GACTGTGAACCGGTCAAAGGGAGAGAAATCAAGTATATTTCTGGCCCCAA  1149
      |||   || | || | || ||||||||||||    |||||  |||||| |
seq2  GACGTGGATCAGGGCTAAAGGAGAGAAATCA---GTATTTGGGGCCCC-A  1133

seq1  AGAGA  1154
      |||||
seq2  AGAGA  1138


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