BAC Information

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BAC

Clone NameB6Ng01-152P24
Chromosome13 (Build37)
Map Location 74,838,386 - 74,955,586
singlet/doubletdoublet
Overlap geneCast, LOC622204
Upstream geneSlc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1
Downstream geneEG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152P24.bB6Ng01-152P24.g
ACCDH948435DH948436
length1,0641,110
definitionDH948435|Mus musculus domesticus DNA, BAC clone: B6Ng01-152P24, 5' end.DH948436|Mus musculus domesticus DNA, BAC clone: B6Ng01-152P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,954,513 - 74,955,586)(74,838,386 - 74,839,491)
sequence
gaattctattcaccctccctgggacacctgcctctaccctggagatagaa
gataaactgacgtacagagtagtatctctctggagtctggaagaatatag
cccaggcacttactctttgatctgtgaaataatggctgagagaagggcag
aaacaggggaagcctgttgagtcttctgagagatgctcctatagcactca
gctagaccagttcagatccttgtctcttctcagctgttgtccagtcacag
ttttcaaaacctgtggcactacaagaaagggtcccatgcaatgtgttctc
cttggcaaatgtgcaacagtcagttctcagaatccaatccttgtagccac
catttctgtcacaatattttcttgttttatggattcttcactcactgtac
cttatattttgcattgcactatgttaagatagacaaaatgaccatacatg
caaagggtgcttgtcaaggaataatcttaaacaatggctaatatgtgatt
ccttatgtgggtttggcttaatgctgggtatcaggattctctatgaacat
ttaaggaagcttcaaaggggagtcacctaatcattgggtttccatttgtg
ggtgtgcctgatagcatcagtagccaaatttataattaagtattgtaagt
tactgagttctgctttatctctctcctccagggttttaattgtgcattat
ttagtgcttaggataaaatgaaattatatcaattatcttttcttaaagat
agtccttgtgacccagtcattgtgtattctctcctaaagtgtgttattct
tacactatgaatattctaataataggctgcatgttggaaatcacttgtaa
ttttcaagtaaagaaaagtcaaacattgtacccagtgttggaaagattta
gtattggtctaccttgcacaacctgagtgctgtgtcttctaaaccctaag
acagtagtatctggttcctgcctcagcggccatggaagaagattctgtac
agaaaaagataatagtctttagatgagtttaaaaaaaatagttttattca
caagttctgggagt
gaattccttactgtcccgttttccttaccccctgttggttataggcatgt
gccaccatgcttgggtcatgttacattcttcagtacaagttttctttctc
acttggaaatctggttctacgtttaaaaggttcttgtgggaaataaagtt
agtaatataggcttatcttcacacattggcacaggagaaagatacttaac
aaattttagtttctttaaagtttaaaagaaaactacatgcataataaaaa
caatgaaagtatacatcatagtatttacctctgttttcttagtcggtggc
ttctctggtttgtccttaaaaacaaggtagtcttttggttaactacagac
ctctatttcggttcactttagtcttagagtgagcatctattatacaaaac
tgatgacctgggcacctcacccagatttctagtaaatcttcactttcata
gccatttcagtagccagatgcaaagatctgattctgaaagtacacagaga
ctatgtaggaattttctggtaccaggtattacaatttattaccaccagat
acctgcggtttttgagtggttggtttgggtggtcctgggaatgaatctag
agcctaatacattccagtctgtttgttttgttgttattgttgttattttg
tttaaaacaaaaaggaaaatctaagttacctaggctgaacttccgatgtt
tctttagacttccaaataactggttgtaagcctctaccatgcctgatgct
cattatagtttcaaaagattattttcaggcaggaattacaagatcactaa
cttatagggttctcatccatcttaaggcaagagcaataaatgaaggacct
ccaatgatggcaaacaaaggtggtgtagtaatctcaacataggggatggt
gactgatagcaggagacagcattgcaggaacaaagtactcctagggcaca
aggctttggccagggaggggctgcccacccatagcatcagagcacactga
tgggagcttaaactccttttttccatttgatgagcaggcctgggaaggaa
tgattcaaacctctacaactctaaagccagagattagatccaacaaaaag
gggggaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_74954513_74955586
seq2: B6Ng01-152P24.b_48_1111 (reverse)

seq1  ACTCCCAGGAC-TGTGAATAAAACCTATTTTTTTTAAAACCTTCATCTAA  49
      |||||||| || ||||||||||| ||||||||||||||    ||||||||
seq2  ACTCCCAGAACTTGTGAATAAAA-CTATTTTTTTTAAA---CTCATCTAA  46

seq1  AGACTATATCCTTTTTCTGTACAGAATTCTTCTTTCCATGGCCGCCTGGG  99
      |||||||   |||||||||||||||| ||||| ||||||||||| ||| |
seq2  AGACTATTATCTTTTTCTGTACAGAA-TCTTC-TTCCATGGCCG-CTGAG  93

seq1  GCAGGAACCAGATTACTACTGTCTTAGGGTTTTAAGAAGACACAGCACTC  149
      |||||||||||| |||||||||||||||||||  ||||||||||||||||
seq2  GCAGGAACCAGA-TACTACTGTCTTAGGGTTT--AGAAGACACAGCACTC  140

seq1  AGGTTGTGCAAGGTAGACCAATACTAAATCTTTCCCAACACTGGGTACAA  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGTTGTGCAAGGTAGACCAATACTAAATCTTT-CCAACACTGGGTACAA  189

seq1  TGTTTGACTTTTCTTTACTTGAAAATTACAAGTGATTTCCAACCTGCAGC  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTTTGACTTTTCTTTACTTGAAAATTACAAGTGATTTCCAACATGCAGC  239

seq1  CTATTATTAGAATATTCATAGTGTAAGAATAACACACTTTAGGAGAGAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTAGAATATTCATAGTGTAAGAATAACACACTTTAGGAGAGAAT  289

seq1  ACACAATGACTGGGTCACAAGGACTATCTTTAAGAAAAGATAATTGATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGACTGGGTCACAAGGACTATCTTTAAGAAAAGATAATTGATAT  339

seq1  AATTTCATTTTATCCTAAGCACTAAATAATGCACAATTAAAACCCTGGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTTATCCTAAGCACTAAATAATGCACAATTAAAACCCTGGAG  389

seq1  GAGAGAGATAAAGCAGAACTCAGTAACTTACAATACTTAATTATAAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATAAAGCAGAACTCAGTAACTTACAATACTTAATTATAAATTT  439

seq1  GGCTACTGATGCTATCAGGCACACCCACAAATGGAAACCCAATGATTAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTGATGCTATCAGGCACACCCACAAATGGAAACCCAATGATTAGG  489

seq1  TGACTCCCCTTTGAAGCTTCCTTAAATGTTCATAGAGAATCCTGATACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCCTTTGAAGCTTCCTTAAATGTTCATAGAGAATCCTGATACCC  539

seq1  AGCATTAAGCCAAACCCACATAAGGAATCACATATTAGCCATTGTTTAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAGCCAAACCCACATAAGGAATCACATATTAGCCATTGTTTAAG  589

seq1  ATTATTCCTTGACAAGCACCCTTTGCATGTATGGTCATTTTGTCTATCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCTTGACAAGCACCCTTTGCATGTATGGTCATTTTGTCTATCTT  639

seq1  AACATAGTGCAATGCAAAATATAAGGTACAGTGAGTGAAGAATCCATAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTGCAATGCAAAATATAAGGTACAGTGAGTGAAGAATCCATAAA  689

seq1  ACAAGAAAATATTGTGACAGAAATGGTGGCTACAAGGATTGGATTCTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAATATTGTGACAGAAATGGTGGCTACAAGGATTGGATTCTGAG  739

seq1  AACTGACTGTTGCACATTTGCCAAGGAGAACACATTGCATGGGACCCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTGTTGCACATTTGCCAAGGAGAACACATTGCATGGGACCCTTT  789

seq1  CTTGTAGTGCCACAGGTTTTGAAAACTGTGACTGGACAACAGCTGAGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGTGCCACAGGTTTTGAAAACTGTGACTGGACAACAGCTGAGAAG  839

seq1  AGACAAGGATCTGAACTGGTCTAGCTGAGTGCTATAGGAGCATCTCTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGATCTGAACTGGTCTAGCTGAGTGCTATAGGAGCATCTCTCAG  889

seq1  AAGACTCAACAGGCTTCCCCTGTTTCTGCCCTTCTCTCAGCCATTATTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCAACAGGCTTCCCCTGTTTCTGCCCTTCTCTCAGCCATTATTTC  939

seq1  ACAGATCAAAGAGTAAGTGCCTGGGCTATATTCTTCCAGACTCCAGAGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCAAAGAGTAAGTGCCTGGGCTATATTCTTCCAGACTCCAGAGAG  989

seq1  ATACTACTCTGTACGTCAGTTTATCTTCTATCTCCAGGGTAGAGGCAGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTCTGTACGTCAGTTTATCTTCTATCTCCAGGGTAGAGGCAGGT  1039

seq1  GTCCCAGGGAGGGTGAATAGAATTC  1074
      |||||||||||||||||||||||||
seq2  GTCCCAGGGAGGGTGAATAGAATTC  1064

seq1: chr13_74838386_74839491
seq2: B6Ng01-152P24.g_68_1177

seq1  GAATTCCTTACTGTCCCGTTTTCCTTACCCCCTGTTGGTTATAGGCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACTGTCCCGTTTTCCTTACCCCCTGTTGGTTATAGGCATGT  50

seq1  GCCACCATGCTTGGGTCATGTTACATTCTTCAGTACAAGTTTTCTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGCTTGGGTCATGTTACATTCTTCAGTACAAGTTTTCTTTCTC  100

seq1  ACTTGGAAATCTGGTTCTACGTTTAAAAGGTTCTTGTGGGAAATAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAATCTGGTTCTACGTTTAAAAGGTTCTTGTGGGAAATAAAGTT  150

seq1  AGTAATATAGGCTTATCTTCACACATTGGCACAGGAGAAAGATACTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATAGGCTTATCTTCACACATTGGCACAGGAGAAAGATACTTAAC  200

seq1  AAATTTTAGTTTCTTTAAAGTTTAAAAGAAAACTACATGCATAATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAGTTTCTTTAAAGTTTAAAAGAAAACTACATGCATAATAAAAA  250

seq1  CAATGAAAGTATACATCATAGTATTTACCTCTGTTTTCTTAGTCGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAGTATACATCATAGTATTTACCTCTGTTTTCTTAGTCGGTGGC  300

seq1  TTCTCTGGTTTGTCCTTAAAAACAAGGTAGTCTTTTGGTTAACTACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGTTTGTCCTTAAAAACAAGGTAGTCTTTTGGTTAACTACAGAC  350

seq1  CTCTATTTCGGTTCACTTTAGTCTTAGAGTGAGCATCTATTATACAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTCGGTTCACTTTAGTCTTAGAGTGAGCATCTATTATACAAAAC  400

seq1  TGATGACCTGGGCACCTCACCCAGATTTCTAGTAAATCTTCACTTTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCTGGGCACCTCACCCAGATTTCTAGTAAATCTTCACTTTCATA  450

seq1  GCCATTTCAGTAGCCAGATGCAAAGATCTGATTCTGAAAGTACACAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCAGTAGCCAGATGCAAAGATCTGATTCTGAAAGTACACAGAGA  500

seq1  CTATGTAGGAATTTTCTGGTACCAGGTATTACAATTTATTACCACCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGGAATTTTCTGGTACCAGGTATTACAATTTATTACCACCAGAT  550

seq1  ACCTGCGGTTTTTGAGTGGTTGGTTTGGGTGGTCCTGGGAATGAATCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCGGTTTTTGAGTGGTTGGTTTGGGTGGTCCTGGGAATGAATCTAG  600

seq1  AGCCTAATACATTCCAGTCTGTTTGTTTTGTTGTTATTGTTGTTATTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAATACATTCCAGTCTGTTTGTTTTGTTGTTATTGTTGTTATTTTG  650

seq1  TTTAAAACAAAAAGGAAAATCTAAGTTACCTAGGCTGAACTTCCGATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACAAAAAGGAAAATCTAAGTTACCTAGGCTGAACTTCCGATGTT  700

seq1  TCTTTAGACTTCCAAATAACTGGTTGTAAGCCTCTACCATGCCTGATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGACTTCCAAATAACTGGTTGTAAGCCTCTACCATGCCTGATGCT  750

seq1  CATTATAGTTTCAAAAGATTATTTTCAGGCAGGAATTACAAGATCACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGTTTCAAAAGATTATTTTCAGGCAGGAATTACAAGATCACTAA  800

seq1  CTTATAGGGTTCTCATCCATCTTAAGGCAAGAGCAATAAATGAAGGACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGGGTTCTCATCCATCTTAAGGCAAGAGCAATAAATGAAGGACCT  850

seq1  CCAATGATGGCAAAC-AAGGTGGTGTAGTAATCTCAACATAGGGGATGGT  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCAATGATGGCAAACAAAGGTGGTGTAGTAATCTCAACATAGGGGATGGT  900

seq1  GACTGATAGCAGGAGACAGCATTGCAGGAACAAAGTACTCCTAGGGCACC  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACTGATAGCAGGAGACAGCATTGCAGGAACAAAGTACTCCTAGGGCA-C  949

seq1  AAGGCTTTGGCCAGGGAGGGGCTGCCCCACCCATAGCATCAGAGCACACT  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGGCTTTGGCCAGGGAGGGGCTG-CCCACCCATAGCATCAGAGCACACT  998

seq1  GAT-GGAGCTTAAACTCCTTTTTTCCATTTGATGAGCAGGCCTGGGAA-G  1047
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATGGGAGCTTAAACTCCTTTTTTCCATTTGATGAGCAGGCCTGGGAAGG  1048

seq1  AATGATTC-AACCTCTAACAACTCTAAAG-CAGAG-TTAGATCCAACAGA  1094
      |||||||| ||||||| |||||||||||| ||||| |||||||||||| |
seq2  AATGATTCAAACCTCT-ACAACTCTAAAGCCAGAGATTAGATCCAACAAA  1097

seq1  AA-GGGGGAGGCA  1106
      || ||||||||||
seq2  AAGGGGGGAGGCA  1110