BAC Information

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BAC

Clone NameB6Ng01-153N20
Chromosome13 (Build37)
Map Location 72,843,339 - 72,961,060
singlet/doubletdoublet
Overlap genenone
Upstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153N20.bB6Ng01-153N20.g
ACCDH949058DH949059
length448672
definitionDH949058|Mus musculus domesticus DNA, BAC clone: B6Ng01-153N20, 5' end.DH949059|Mus musculus domesticus DNA, BAC clone: B6Ng01-153N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,960,602 - 72,961,060)(72,843,339 - 72,844,010)
sequence
tgtcagatggccatctttgagtctgatctcactgctcatcacagctaagc
accagtgagccaatgctaatgataaaccaggtcttttaaaagaaacgtgc
aggaaggcacttcatgtcctaacgcaatgtagtccagaagcttgcacaat
gctggcctgaatgcttttgtgagcagtgacctagtattctctaagtgttc
atagatgcaggacagagtttcagtgagcaagaaggttctggagttgtctg
aacctggtttttggatgatagaaatcaaatcaaatcattggtatgtaaga
taacatacctgctgtcctcaaacttggaacttctttaactaactggaaat
ctggatgagagagagagaaagagagaagagaagagaagagaagagaagag
aagagaagagaagagaagagaagagaagagaagagagagaaggggagg
gaattctcttgttggggtcttatgaaaacgggttccaaagagaggcccac
gttaatcctttgaaggaagtaaaagtgaataatgtatgtctgttcctcaa
agaaaatatactgcatccatgactcaaaaacttcaaaagacaacttggct
ttcttctttttaggcaagagtacttaaagcttccttgttcagaaaaactg
aaaatctaaagttgatctttcacctttcgtccccaggtcccaggtcccct
ctttgctgcataggaaggttcttcattctggctcctctcttatcctcttc
ataattttccagatgtttgtcctgctaggtatgctaggagctaaaggctg
ttgagtattagtcatgacagaaaagtttctcaaaggacaatgttggtctc
tcttgttgaccaattccctcccttctccttttcctcttcctccccctctc
agtcccatggctcctccctctgtgcctctaaaattagagttgatacaaac
acagtggaaaactactagtattcattcattcattcattcattcatagttg
tgtgtacgtgtgtgagtatgtgcatgtgtgtatgcatgcatgaatgtgtg
tgtgtctgtctgactgtatgcatgtgtgtctgtgtacgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_72960602_72961060
seq2: B6Ng01-153N20.b_49_502 (reverse)

seq1  CCTCCCCTTCTCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT  50
      ||||||||||||     |||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTCTC-----TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT  45

seq1  CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTCTTTCTCTCTCTCTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTCTTTCTCTCTCTCTCATC  95

seq1  CAGATTTCCAGTTAGTTAAAGAAGTTCCAAGTTTGAGGACAGCAGGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCCAGTTAGTTAAAGAAGTTCCAAGTTTGAGGACAGCAGGTATG  145

seq1  TTATCTTACATACCAATGATTTGATTTGATTTCTATCATCCAAAAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTACATACCAATGATTTGATTTGATTTCTATCATCCAAAAACCAG  195

seq1  GTTCAGACAACTCCAGAACCTTCTTGCTCACTGAAACTCTGTCCTGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGACAACTCCAGAACCTTCTTGCTCACTGAAACTCTGTCCTGCATC  245

seq1  TATGAACACTTAGAGAATACTAGGTCACTGCTCACAAAAGCATTCAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACACTTAGAGAATACTAGGTCACTGCTCACAAAAGCATTCAGGCC  295

seq1  AGCATTGTGCAAGCTTCTGGACTACATTGCGTTAGGACATGAAGTGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTGCAAGCTTCTGGACTACATTGCGTTAGGACATGAAGTGCCTT  345

seq1  CCTGCACGTTTCTTTTAAAAGACCTGGTTTATCATTAGCATTGGCTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACGTTTCTTTTAAAAGACCTGGTTTATCATTAGCATTGGCTCACT  395

seq1  GGTGCTTAGCTGTGATGAGCAGTGAGATCAGACTCAAAGATGGCCATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTAGCTGTGATGAGCAGTGAGATCAGACTCAAAGATGGCCATCTG  445

seq1  ACAGAATTC  459
      |||||||||
seq2  ACAGAATTC  454

seq1: chr13_72843339_72844010
seq2: B6Ng01-153N20.g_70_741

seq1  GAATTCTCTTGTTGGGGTCTTATGAAAACGGGTTCCAAAGAGAGGCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGTTGGGGTCTTATGAAAACGGGTTCCAAAGAGAGGCCCAC  50

seq1  GTTAATCCTTTGAAGGAAGTAAAAGTGAATAATGTATGTCTGTTCCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCCTTTGAAGGAAGTAAAAGTGAATAATGTATGTCTGTTCCTCAA  100

seq1  AGAAAATATACTGCATCCATGACTCAAAAACTTCAAAAGACAACTTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATACTGCATCCATGACTCAAAAACTTCAAAAGACAACTTGGCT  150

seq1  TTCTTCTTTTTAGGCAAGAGTACTTAAAGCTTCCTTGTTCAGAAAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTTTAGGCAAGAGTACTTAAAGCTTCCTTGTTCAGAAAAACTG  200

seq1  AAAATCTAAAGTTGATCTTTCACCTTTCGTCCCCAGGTCCCAGGTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTAAAGTTGATCTTTCACCTTTCGTCCCCAGGTCCCAGGTCCCCT  250

seq1  CTTTGCTGCATAGGAAGGTTCTTCATTCTGGCTCCTCTCTTATCCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGCATAGGAAGGTTCTTCATTCTGGCTCCTCTCTTATCCTCTTC  300

seq1  ATAATTTTCCAGATGTTTGTCCTGCTAGGTATGCTAGGAGCTAAAGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTCCAGATGTTTGTCCTGCTAGGTATGCTAGGAGCTAAAGGCTG  350

seq1  TTGAGTATTAGTCATGACAGAAAAGTTTCTCAAAGGACAATGTTGGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATTAGTCATGACAGAAAAGTTTCTCAAAGGACAATGTTGGTCTC  400

seq1  TCTTGTTGACCAATTCCCTCCCTTCTCCTTTTCCTCTTCCTCCCCCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGACCAATTCCCTCCCTTCTCCTTTTCCTCTTCCTCCCCCTCTC  450

seq1  AGTCCCATGGCTCCTCCCTCTGTGCCTCTAAAATTAGAGTTGATACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATGGCTCCTCCCTCTGTGCCTCTAAAATTAGAGTTGATACAAAC  500

seq1  ACAGTGGAAAACTACTAGTATTCATTCATTCATTCATTCATTCATAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGAAAACTACTAGTATTCATTCATTCATTCATTCATTCATAGTTG  550

seq1  TGTGTACGTGTGTGAGTATGTGCATGTGTGTATGCATGCATGAATGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACGTGTGTGAGTATGTGCATGTGTGTATGCATGCATGAATGTGTG  600

seq1  TGTGTCTGTCTGACTGTATGCATGTGTGTCTGTGTACGTGTGTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTCTGACTGTATGCATGTGTGTCTGTGTACGTGTGTGTGTGTG  650

seq1  TGTGTGTGTGTGTGTGTGTGTG  672
      ||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTG  672