BAC Information

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BAC

Clone NameB6Ng01-154B16
Chromosome13 (Build37)
Map Location 45,848,669 - 45,975,773
singlet/doubletdoublet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154B16.bB6Ng01-154B16.g
ACCDH949239DH949240
length8831,077
definitionDH949239|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B16, 5' end.DH949240|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,974,890 - 45,975,773)(45,848,669 - 45,849,754)
sequence
gaattctaatagagatgggcagtaatgcttgactggcttactttggggca
ttgtggatggacagacatctctatgctctcatccatggcagcccttttcc
ttccaaaccagcaggctgagaagccaagaggaaggctgtgacaagaggga
gggggcatccagaaaaggattcaagagtcccaccccttgccccgctccct
ggagcagtgcccagacaggagaggaaataatacttgctccttttatggaa
tttgttagaaagcccctaagccctgcatcccttctgttcaaccttttctc
ttccccagcttcccatcctttggctggatcactacgatgtcatgcgggtt
tcacccgttttctaatagctacgacctctggttcaaaattccaaactttg
ctaaaatacaatgatatgcagcgggagatggtgccttccagattcctgaa
atgcatcactcagttgtaaaagaattttaaaaaccctcaagacgcatttt
ctgtcccacattcgtgtgacgcttgagctttctgaatggttgcaaatcac
cgtgactaacactcatccctctcatttgtttggctggttttaagccatca
ggacaggggacagtcatccaatccttattgatgcctgacccccactgtca
tgcccgacatctcattccccaagcccaagtctggagagctccgggccttt
cttccttggaaggagctggtgagtgaacagcttggaagaagttttccaag
aaccctgccagtttccgcagaagaggctgggaaatgcaatggagtgggtt
gggggcattcattttggagcctagaacatcatgggggacagaaggggagt
ggaagaagagtagagatattgttgggaagggag
gaattcaccagacctcagtggttgaacatcaaaccacaggtaaggacaca
ccttagtacatcatcccctggcttgattgtgacatcaagctcatttatat
tgtgtccctcctggattccttctcaattctggccatgtaaatatcatgga
tacatagcaacatggttccttccgaacccgaacagccacctgctgcttat
atatcctcatcgatgttcagtccgcctcattcctcttgctactgtatctt
gtggatttaggggaagaaaaaaatttaaaagttcttttagaaacaagatt
caaaatatatttcgacatttatgtctatgtttgggacaattattagtcca
cggaagaaaccattgtcgttatcacaagcagacagatttgtaggcttatt
gaaactttcttgtagcctaggctagctctgaatctttacgcacctgagag
taaacttgaactctgatcctcctgcctctacctcctgtgtgctagattac
aggcatagctcaacatggtcagcttgtgaggtgttagaaatcaaacgtag
ggctttgtgcacactaagcaaagcaccctaccaactgagctacatctcaa
gcttcattagcagtttaaaaattttttttctttaggactcataactgcag
agtgaaagtactcagctattccaacagacagcaacatcactgttctccat
tcactggagaggaaacagaagttcagaaaggttagctaagtcagacacag
ccatgcaactactaactccagccacagaatatagagtagctctttggata
tccaactctatacattgtaattttatgattgtatcactacgtagcccagg
ctaacctgaaatgcatgatcctcctgcttcaatcttttgagttttgggat
tctggatgtgtaccaccacacctgacttaagtttccattttaagaaactg
cacaggaagggtgaggaaagaaaaaaatcaacaggatactactgggctgg
agaggtatgcaatggttgagttacttgccaattgatcaatctgtttagat
caacagccagactaaagcatttttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45974890_45975773
seq2: B6Ng01-154B16.b_45_927 (reverse)

seq1  CTCCCTTCCCAACAATATCTCCTACTCTTCTTCCACTCCCCCTTCTGTCC  50
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  CTCCCTTCCCAACAATATCT-CTACTCTTCTTCCACT-CCCCTTCTGTCC  48

seq1  CCCATGATGTTCTAGGCTCCAAAATGAATGCCCCCAACCCACTCCATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGATGTTCTAGGCTCCAAAATGAATGCCCCCAACCCACTCCATTGC  98

seq1  ATTTCCCAGCCTCTTCTGCGGAAACTGGCAGGGTTCTTGGAAAACTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCAGCCTCTTCTGCGGAAACTGGCAGGGTTCTTGGAAAACTTCTT  148

seq1  CCAAGCTGTTCACTCACCAGCTCCTTCCAAGGAAGAAAGGCCCGGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGTTCACTCACCAGCTCCTTCCAAGGAAGAAAGGCCCGGAGCTC  198

seq1  TCCAGACTTGGGCTTGGGGAATGAGATGTCGGGCATGACAGTGGGGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTTGGGCTTGGGGAATGAGATGTCGGGCATGACAGTGGGGGTCA  248

seq1  GGCATCAATAAGGATTGGATGACTGTCCCCTGTCCTGATGGCTTAAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAATAAGGATTGGATGACTGTCCCCTGTCCTGATGGCTTAAAACC  298

seq1  AGCCAAACAAATGAGAGGGATGAGTGTTAGTCACGGTGATTTGCAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACAAATGAGAGGGATGAGTGTTAGTCACGGTGATTTGCAACCAT  348

seq1  TCAGAAAGCTCAAGCGTCACACGAATGTGGGACAGAAAATGCGTCTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGCTCAAGCGTCACACGAATGTGGGACAGAAAATGCGTCTTGAG  398

seq1  GGTTTTTAAAATTCTTTTACAACTGAGTGATGCATTTCAGGAATCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAAAATTCTTTTACAACTGAGTGATGCATTTCAGGAATCTGGAA  448

seq1  GGCACCATCTCCCGCTGCATATCATTGTATTTTAGCAAAGTTTGGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATCTCCCGCTGCATATCATTGTATTTTAGCAAAGTTTGGAATTT  498

seq1  TGAACCAGAGGTCGTAGCTATTAGAAAACGGGTGAAACCCGCATGACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGAGGTCGTAGCTATTAGAAAACGGGTGAAACCCGCATGACATC  548

seq1  GTAGTGATCCAGCCAAAGGATGGGAAGCTGGGGAAGAGAAAAGGTTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATCCAGCCAAAGGATGGGAAGCTGGGGAAGAGAAAAGGTTGAAC  598

seq1  AGAAGGGATGCAGGGCTTAGGGGCTTTCTAACAAATTCCATAAAAGGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGATGCAGGGCTTAGGGGCTTTCTAACAAATTCCATAAAAGGAGC  648

seq1  AAGTATTATTTCCTCTCCTGTCTGGGCACTGCTCCAGGGAGCGGGGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTATTTCCTCTCCTGTCTGGGCACTGCTCCAGGGAGCGGGGCAAG  698

seq1  GGGTGGGACTCTTGAATCCTTTTCTGGATGCCCCCTCCCTCTTGTCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGACTCTTGAATCCTTTTCTGGATGCCCCCTCCCTCTTGTCACAG  748

seq1  CCTTCCTCTTGGCTTCTCAGCCTGCTGGTTTGGAAGGAAAAGGGCTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTTGGCTTCTCAGCCTGCTGGTTTGGAAGGAAAAGGGCTGCCA  798

seq1  TGGATGAGAGCATAGAGATGTCTGTCCATCCACAATGCCCCAAAGTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAGAGCATAGAGATGTCTGTCCATCCACAATGCCCCAAAGTAAGC  848

seq1  CAGTC-GGCATTACTGCCCATCTCTATTAGAATTC  884
      |||||  ||||||||||||||||||||||||||||
seq2  CAGTCAAGCATTACTGCCCATCTCTATTAGAATTC  883

seq1: chr13_45848669_45849754
seq2: B6Ng01-154B16.g_67_1143

seq1  GAATTCACCAGACCTCAGTGGTTGAACATCAAACCACAGGTAAGGACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGACCTCAGTGGTTGAACATCAAACCACAGGTAAGGACACA  50

seq1  CCTTAGTACATCATCCCCTGGCTTGATTGTGACATCAAGCTCATTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTACATCATCCCCTGGCTTGATTGTGACATCAAGCTCATTTATAT  100

seq1  TGTGTCCCTCCTGGATTCCTTCTCAATTCTGGCCATGTAAATATCATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCTCCTGGATTCCTTCTCAATTCTGGCCATGTAAATATCATGGA  150

seq1  TACATAGCAACATGGTTCCTTCCGAACCCGAACAGCCACCTGCTGCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGCAACATGGTTCCTTCCGAACCCGAACAGCCACCTGCTGCTTAT  200

seq1  ATATCCTCATCGATGTTCAGTCCGCCTCATTCCTCTTGCTACTGTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCATCGATGTTCAGTCCGCCTCATTCCTCTTGCTACTGTATCTT  250

seq1  GTGGATTTAGGGGAAGAAAAAAATTTAAAAGTTCTTTTAGAAACAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTAGGGGAAGAAAAAAATTTAAAAGTTCTTTTAGAAACAAGATT  300

seq1  CAAAATATATTTCGACATTTATGTCTATGTTTGGGACAATTATTAGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATATTTCGACATTTATGTCTATGTTTGGGACAATTATTAGTCCA  350

seq1  CGGAAGAAACCATTGTCGTTATCACAAGCAGACAGATTTGTAGGCTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGAAACCATTGTCGTTATCACAAGCAGACAGATTTGTAGGCTTATT  400

seq1  GAAACTTTCTTGTAGCCTAGGCTAGCTCTGAATCTTTACGCACCTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTCTTGTAGCCTAGGCTAGCTCTGAATCTTTACGCACCTGAGAG  450

seq1  TAAACTTGAACTCTGATCCTCCTGCCTCTACCTCCTGTGTGCTAGATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTGAACTCTGATCCTCCTGCCTCTACCTCCTGTGTGCTAGATTAC  500

seq1  AGGCATAGCTCAACATGGTCAGCTTGTGAGGTGTTAGAAATCAAACGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGCTCAACATGGTCAGCTTGTGAGGTGTTAGAAATCAAACGTAG  550

seq1  GGCTTTGTGCACACTAAGCAAAGCACCCTACCAACTGAGCTACATCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTGCACACTAAGCAAAGCACCCTACCAACTGAGCTACATCTCAA  600

seq1  GCTTCATTAGCAGTTTAAAAATTTTTTTTCTTTAGGACTCATAACTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTAGCAGTTTAAAAATTTTTTTTCTTTAGGACTCATAACTGCAG  650

seq1  AGTGAAAGTACTCAGCTATTCCAACAGACAGCAACATCACTGTTCTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAGTACTCAGCTATTCCAACAGACAGCAACATCACTGTTCTCCAT  700

seq1  TCACTGGAGAGGAAACAGAAGTTCAGAAAGGTTAGCTAAGTCAGACACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGAGAGGAAACAGAAGTTCAGAAAGGTTAGCTAAGTCAGACACAG  750

seq1  CCATGCAACTACTAACTCCAGCCACAGAATATAGAGTAGCTCTTTGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAACTACTAACTCCAGCCACAGAATATAGAGTAGCTCTTTGGATA  800

seq1  TCCAACTCTATACATTGTAATTTTATGATTGTATCACTACGTAGCCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTCTATACATTGTAATTTTATGATTGTATCACTACGTAGCCCAGG  850

seq1  CTAACCTGAAATGCATGATCCTCCTGCTTCAATCTTTTGAGTTTTGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGAAATGCATGATCCTCCTGCTTCAATCTTTTGAGTTTTGGGAT  900

seq1  TCTGGATGTGTACCACCACACCTGACTTAAGGTTTCCATTTTAAGAAACT  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGGATGTGTACCACCACACCTGACTTAA-GTTTCCATTTTAAGAAACT  949

seq1  GCAACAGGAAGGGTGAGGGAAAGAAAAAAAATCAAACAGGATACAACTGG  1000
      || ||||||||||||| |||||| ||||||||| |||||||||| |||||
seq2  GC-ACAGGAAGGGTGA-GGAAAG-AAAAAAATC-AACAGGATACTACTGG  995

seq1  GCTGGAGAGGTATGCCAATGGTAGAG-TACTTGCCAAATAGGATACAATC  1049
      |||||||||||||| ||||||| ||| |||||||||| |  ||| |||||
seq2  GCTGGAGAGGTATG-CAATGGTTGAGTTACTTGCCAATT--GAT-CAATC  1041

seq1  TG-TTAGATCAACAAGCCAGACTAAAAGCATTTTTCTT  1086
      || |||||||||| ||||||||| ||||||||||||||
seq2  TGTTTAGATCAAC-AGCCAGACT-AAAGCATTTTTCTT  1077