BAC Information

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BAC

Clone NameB6Ng01-154B24
Chromosome13 (Build37)
Map Location 29,671,746 - 29,799,586
singlet/doubletdoublet
Overlap geneCdkal1
Upstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1, Dusp22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154B24.bB6Ng01-154B24.g
ACCDH949255DH949256
length9761,147
definitionDH949255|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B24, 5' end.DH949256|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,798,597 - 29,799,586)(29,671,746 - 29,672,898)
sequence
gaattctcactggccgcttggaggatggaaagtgataagctcagtgctag
caatgccatgagagggctagagacagaagcatagtctggtaggtgcacgt
agcgggtgtggacactgaaccctggagaggttgagtcagtggctgtttgc
ttagttaacagaagtcttaagagcgaggctttgtgttcatcttaatgtgt
aaagacttgttctttaccttctgtttctgcagcccacacttcatttagag
agcccaagccagagcaataatgtgtactatctgtaaccctccaccagcac
cccaccaaagcattgatacatttgttgattgcctttggacacattacttt
tctgatgcttagtgttctcagctgcagctggagaggatttgaagggtttc
ctatagacctttcagctcccttgcttttatcttaatgtcccaaacagaac
tctataacctctgattgcctctcagagctatttcccacattcatctgtgc
ccacctagctggcatttatgtgttagattacttagtatccctgctggttg
gcatccaaagggactcttcttctctggtgctcaggatgaccttcaatctc
ttgtccatcaaaacctgggttctctgcatccccaaaggatccttgctttc
tagtgtctcatcaaatccttagtctctggagtccagtgggatgcacactc
tctagcatccactaggacccaaattctttttttttttttttttttttttt
ttttttcccttttttttttccatttttattaggtatttagctcatttaca
tttccaatgctataccaaaagtccccctttacccacccaacctcactccc
ctacccacccactcccccctttggccctgcgttccctggtaccgggcaac
caagctgcgggccaaggggctctcttcatgaggctcgactaggccatctt
gatcctatgcagctagagtccagagc
gaattccacttcagatgaaaaaataagaaacaaatgatagcaaaacagaa
agtttagggcagggaatagaggaatttacactccacattttcatgaattt
gaattaaacaataataaaactgcctgataaaaatcaacagcagaaatggg
gcatctttgtatacattcattcaaaacaaaatagtattagaccctgggtc
catcaatcaccgtgcagtagaaaaacccaagaactatcaaactattgggt
ggtcctcctcagaggaaccttgtcagaaccatctgactttgatctcccat
tcacagaaatagcccggagaaacttctccaccccataagaataacaaatc
tcagaagccacacaatctgcaggccagaaatcacctctggtgagaaatcc
cccttccagtgcactgaggcaatattaactgttacgatgctagataagat
gcaattcagtgaaaactcagaggaataaaagccagggcagcagatctcag
agcctaagcaagactaaggaggggaagacaagagagatcagtagcaaact
ctgggtgagaaggaacctccagccaccaacctttaaggaaactatgagat
acaaaagaaaatataaaacctggaagtgaaattttaactgtttttccaga
tataagagccacactaatgaaacttaaacatatcaaattctgtcattctt
ggtgaaatttcatgagtcaaagcatttaggatgaccttccccatataaaa
ggtcagtgatttgtgtgcacatgtgcaatgggagcaaatgaaaaacaact
gcagagagagaggaaaacagcgcagctaacaagaagtcccttccttcatt
ccagccccagggtgtccatctgatgacagagtcccttccctcaccctggc
cccagccaggtgtccactggatgagtgtccttctcacacagaagcagcaa
acagctatgcttaaacctaaaagacgcagctgaaggagagacctgtcccc
cgtcttgtcctttgaggctgcatgactaatgagtgaggctcctcatgttc
aagctgaaaaaggtgatagccttgtggctttgcccatgtgaaccactctt
caattcacagaacctcctgccacactcagtttcacaatggaaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29798597_29799586
seq2: B6Ng01-154B24.b_48_1023 (reverse)

seq1  GCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATC  50
      ||||| ||||||||||||||| | |||  |||||||||||||||  | ||
seq2  GCTCTGGACTCTAGCTGCATA-GGATC--AAGATGGCCTAGTCGAGCCTC  47

seq1  ACTGGAAAGAGAGGCCCATTGGACACGCAGACTTTGTGTGCCCCGGTACA  100
      | ||  |||||| |||| |||| | ||||| ||| || || |||||||| 
seq2  A-TG--AAGAGA-GCCCCTTGG-CCCGCAG-CTTGGT-TG-CCCGGTACC  89

seq1  GGGGAACGCCAGGGCCAAAGGGGGGGAGTGGGTGGGTAGGGGAGTGGGGG  150
       ||||||| |||||||||| |||||||||||||||||||||||||| || 
seq2  AGGGAACG-CAGGGCCAAA-GGGGGGAGTGGGTGGGTAGGGGAGTGAGGT  137

seq1  TGGGTGGGT-AAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGC  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGTAAAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGC  187

seq1  TAAATACCTAATAAAAAATGGAAAAAAAAAAAGGAAAAAAAAAAAAAAAA  249
      |||||||||||| |||||||| |||||||||||| |||||||||||||||
seq2  TAAATACCTAAT-AAAAATGG-AAAAAAAAAAGGGAAAAAAAAAAAAAAA  235

seq1  AAAAAAAAAAAAAAAGAATTTGGGTCCTAGTGGATGCTAGAGAGTGTGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGAATTTGGGTCCTAGTGGATGCTAGAGAGTGTGCA  285

seq1  TCCCACTGGACTCCAGAGACTAAGGATTTGATGAGACACTAGAAAGCAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGGACTCCAGAGACTAAGGATTTGATGAGACACTAGAAAGCAAG  335

seq1  GATCCTTTGGGGATGCAGAGAACCCAGGTTTTGATGGACAAGAGATTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTGGGGATGCAGAGAACCCAGGTTTTGATGGACAAGAGATTGAA  385

seq1  GGTCATCCTGAGCACCAGAGAAGAAGAGTCCCTTTGGATGCCAACCAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCCTGAGCACCAGAGAAGAAGAGTCCCTTTGGATGCCAACCAGCA  435

seq1  GGGATACTAAGTAATCTAACACATAAATGCCAGCTAGGTGGGCACAGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACTAAGTAATCTAACACATAAATGCCAGCTAGGTGGGCACAGATG  485

seq1  AATGTGGGAAATAGCTCTGAGAGGCAATCAGAGGTTATAGAGTTCTGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGAAATAGCTCTGAGAGGCAATCAGAGGTTATAGAGTTCTGTTT  535

seq1  GGGACATTAAGATAAAAGCAAGGGAGCTGAAAGGTCTATAGGAAACCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTAAGATAAAAGCAAGGGAGCTGAAAGGTCTATAGGAAACCCTT  585

seq1  CAAATCCTCTCCAGCTGCAGCTGAGAACACTAAGCATCAGAAAAGTAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTCTCCAGCTGCAGCTGAGAACACTAAGCATCAGAAAAGTAATG  635

seq1  TGTCCAAAGGCAATCAACAAATGTATCAATGCTTTGGTGGGGTGCTGGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAAGGCAATCAACAAATGTATCAATGCTTTGGTGGGGTGCTGGTG  685

seq1  GAGGGTTACAGATAGTACACATTATTGCTCTGGCTTGGGCTCTCTAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTACAGATAGTACACATTATTGCTCTGGCTTGGGCTCTCTAAATG  735

seq1  AAGTGTGGGCTGCAGAAACAGAAGGTAAAGAACAAGTCTTTACACATTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGGCTGCAGAAACAGAAGGTAAAGAACAAGTCTTTACACATTAA  785

seq1  GATGAACACAAAGCCTCGCTCTTAAGACTTCTGTTAACTAAGCAAACAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACACAAAGCCTCGCTCTTAAGACTTCTGTTAACTAAGCAAACAGC  835

seq1  CACTGACTCAACCTCTCCAGGGTTCAGTGTCCACACCCGCTACGTGCACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTCAACCTCTCCAGGGTTCAGTGTCCACACCCGCTACGTGCACC  885

seq1  TACCAGACTATGCTTCTGTCTCTAGCCCTCTCATGGCATTGCTAGCACTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGACTATGCTTCTGTCTCTAGCCCTCTCATGGCATTGCTAGCACTG  935

seq1  AGCTTATCACTTTCCATCCTCCAAGCGGCCAGTGAGAATTC  990
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATCACTTTCCATCCTCCAAGCGGCCAGTGAGAATTC  976

seq1: chr13_29671746_29672898
seq2: B6Ng01-154B24.g_65_1211

seq1  GAATTCCACTTCAGATGAAAAAATAAGAAACAAATGATAGCAAAACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCAGATGAAAAAATAAGAAACAAATGATAGCAAAACAGAA  50

seq1  AGTTTAGGGCAGGGAATAGAGGAATTTACACTCCACATTTTCATGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGGGCAGGGAATAGAGGAATTTACACTCCACATTTTCATGAATTT  100

seq1  GAATTAAACAATAATAAAACTGCCTGATAAAAATCAACAGCAGAAATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAACAATAATAAAACTGCCTGATAAAAATCAACAGCAGAAATGGG  150

seq1  GCATCTTTGTATACATTCATTCAAAACAAAATAGTATTAGACCCTGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTGTATACATTCATTCAAAACAAAATAGTATTAGACCCTGGGTC  200

seq1  CATCAATCACCGTGCAGTAGAAAAACCCAAGAACTATCAAACTATTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCACCGTGCAGTAGAAAAACCCAAGAACTATCAAACTATTGGGT  250

seq1  GGTCCTCCTCAGAGGAACCTTGTCAGAACCATCTGACTTTGATCTCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCCTCAGAGGAACCTTGTCAGAACCATCTGACTTTGATCTCCCAT  300

seq1  TCACAGAAATAGCCCGGAGAAACTTCTCCACCCCATAAGAATAACAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAATAGCCCGGAGAAACTTCTCCACCCCATAAGAATAACAAATC  350

seq1  TCAGAAGCCACACAATCTGCAGGCCAGAAATCACCTCTGGTGAGAAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCCACACAATCTGCAGGCCAGAAATCACCTCTGGTGAGAAATCC  400

seq1  CCCTTCCAGTGCACTGAGGCAATATTAACTGTTACGATGCTAGATAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCAGTGCACTGAGGCAATATTAACTGTTACGATGCTAGATAAGAT  450

seq1  GCAATTCAGTGAAAACTCAGAGGAATAAAAGCCAGGGCAGCAGATCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCAGTGAAAACTCAGAGGAATAAAAGCCAGGGCAGCAGATCTCAG  500

seq1  AGCCTAAGCAAGACTAAGGAGGGGAAGACAAGAGAGATCAGTAGCAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAGCAAGACTAAGGAGGGGAAGACAAGAGAGATCAGTAGCAAACT  550

seq1  CTGGGTGAGAAGGAACCTCCAGCCACCAACCTTTAAGGAAACTATGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGAGAAGGAACCTCCAGCCACCAACCTTTAAGGAAACTATGAGAT  600

seq1  ACAAAAGAAAATATAAAACCTGGAAGTGAAATTTTAACTGTTTTTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAAATATAAAACCTGGAAGTGAAATTTTAACTGTTTTTCCAGA  650

seq1  TATAAGAGCCACACTAATGAAACTTAAACATATCAAATTCTGTCATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGCCACACTAATGAAACTTAAACATATCAAATTCTGTCATTCTT  700

seq1  GGTGAAATTTCATGAGTCAAAGCATTTAGGATGACCTTCCCCATATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATTTCATGAGTCAAAGCATTTAGGATGACCTTCCCCATATAAAA  750

seq1  GGTCAGTGATTTGTGTGCACATGTGCAATGGGAGCAAATGAAAAACAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTGATTTGTGTGCACATGTGCAATGGGAGCAAATGAAAAACAACT  800

seq1  GCAGAGAGAGAGGAAAACAGCGCAGCTAACAAGAAGTCCCTTCCTTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAGAGGAAAACAGCGCAGCTAACAAGAAGTCCCTTCCTTCATT  850

seq1  CCAGCCCCAGGGTGTCCATCTGATGACAGAGTCCCTTCCCTCACCCTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCAGGGTGTCCATCTGATGACAGAGTCCCTTCCCTCACCCTGGC  900

seq1  CCCAGCCAGGGTGTCCACTGGATGAGTGTCCTTCTCACACAGAAGCAGCA  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCA-GGTGTCCACTGGATGAGTGTCCTTCTCACACAGAAGCAGCA  949

seq1  AACAGCTATGCTTAAACCTAAAAGACGCAGCTGAAGGAAGAGACCTGTCC  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACAGCTATGCTTAAACCTAAAAGACGCAGCTGAAGG-AGAGACCTGTCC  998

seq1  CCCGTCTTGTCCTTTGAGGGCTGCATGACTAATGAGTGAGGCT-CTCATG  1049
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  CCCGTCTTGTCCTTTGA-GGCTGCATGACTAATGAGTGAGGCTCCTCATG  1047

seq1  TACAAGGCTGAGAAAGGTGATTAGCCTGTGGGCTTTGCCCATGTG-ACCA  1098
      | ||| ||||| |||||||| ||||||   ||||||||||||||| ||||
seq2  TTCAA-GCTGAAAAAGGTGA-TAGCCTTGTGGCTTTGCCCATGTGAACCA  1095

seq1  CTCTTTCCAAATCACCAGACCTCCTGCCACACTTCAGTTTTCAC-ATGGA  1147
      |||||  ||| ||||   |||||||||||||| |||| |||||| |||||
seq2  CTCTT--CAATTCACAGAACCTCCTGCCACAC-TCAG-TTTCACAATGGA  1141

seq1  AAATGG  1153
      ||||||
seq2  AAATGG  1147