BAC Information

Click to search

BAC

Clone NameB6Ng01-156A16
Chromosome13 (Build37)
Map Location 76,745,060 - 76,852,020
singlet/doubletdoublet
Overlap geneMctp1, LOC666603
Upstream geneLOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneEG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156A16.bB6Ng01-156A16.g
ACCDH950655DH950656
length1,2521,107
definitionDH950655|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A16, 5' end.DH950656|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,745,060 - 76,746,149)(76,850,891 - 76,852,020)
sequence
gaattcacagcttggaaaagtgaagtctgatgttttaagtatctgaaaac
acttggatacgatagagacaaggctcaaatgcacatgtgttatgttatat
ctcaaatccagggcactacagaactatgttacttaaaaatacatagaggt
tcagtagagcatcacttggaaaatgcacttttagtcagattttctaggct
caaacacaaacataactttttatttagcccgaactttttatttattcttc
ttatctttgtagactcatacttacaaagattaaatcaggcagtattttag
aaattttggaaagtgcctggcatatactattcaataaattgttactacta
tgaactatttttcaatattcaatacttctggagttattaaagtcttttac
atcgatgaatatataaacaaatgattaagcacttataaatatgttacagt
aaataaaagttaataataatattgtttaattccaaagtagaattacaaat
gggttcagtaaatgaagttaaaaatattaacaaaatatgaacattccatt
gtaaatttaattcttcaaaccaaaagaaaataccccccattacccataga
ctcctgtatcagttgtagactactcattaagatatatcaaaagaagcaaa
cactatccagtatgttacatggatgcttgcatcatcactgaatcaaacat
acaatgatggcctaacgaggccccgtcagctagtggcactggtgctgcct
gagtttgtataaatgcattctgatgtttccaaagtgaagagacttaggga
ggatctccctatttttaagcagcatgcttactagttctaaaatatttatg
tatctatgaaatggtggcaaaaataaacataccacaaatttgtttttccc
ttgataaatgttaacctcacgttaatgatcaggtctctcacagtatgtgt
cttttccttgatcatttccattaatactcaatatgttattcttcatacag
tacagatttgatcatagttatgactgagtgagaactgtcccttttgtaaa
ttgtggtatatcaaaaaattaatcttgggccaggaatgatctttatgact
ggagttaataggggctcactggattgattcttgatagattcccaatgaat
gagttgttctggttccagagaatcagttagagaaatgggaagggatcttt
gtactcatcttctgttatctctcaaatctaatgcaagcttggccaggaat
ga
gaattcctataaggaatgcatataaaattgattttaaaaatgttagggac
tggagagatggcttagtggttaagagcaatgaccgttcttccagagatcc
aagttcaatttccagcaaccacatggtggctcacaaccatctgtaatggg
atctgatgcccttttctggtgtgtctgaacacagagacagtgtactcaca
aacataaattaaaaaacaaataattcttttataaagttaacactttatgc
tggagtgattacaatttcagatcttaagataaactaccagacaacagcaa
ttaaaaggaatatggcagtgctcccaaacagatatgtagactaatcgaac
aaaattgaagacataaacatgaacacacataacttcagtcacttaaattt
gacaaagacagaaaaggcatacatttgataaaaggaaacatcttccaaaa
ataatgctgagaaaataggatggtgagatggatgacacccagctggcaag
gacatggtatcagtaggaatctgtactgactggtgtttccaacttcacac
cagccagctctatagtgatgcataacaatagtatgattgttgagacttac
ctgtttaactccaactgagtgagatcaagaaaggctgagcccataaagtc
atcttgcagtccaaaatcatagtcaaatacctaaggggtcgaagagacaa
agcatttcaaaaaaattttggaaaacacttaaaagaaacatactgatttt
aaaaactggttatctcttctacctaaacaactgaaatatatattttaatt
tgtgatcatttattatctagggttttttttagaatagataatcattttgg
tttagacacattctttctaatccttacaaacatatgttcagattgttcat
ttaatgtaacaaatgctttactgctgttaacttgacgaatatttttattg
gatattttctttacttacatttaaaatgtgatcccttctcgttttccctg
gaagtccctatcacatcttcctcccctgcttctatgagagtgtccccatc
actgcacactccacttcccagctctaattccctacctgggcatcgagctt
cacaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76745060_76746149
seq2: B6Ng01-156A16.b_48_1299

seq1  GAATTCACAGCTTGGAAAAGTGAAGTCTGATGTTTTAAGTATCTGAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCTTGGAAAAGTGAAGTCTGATGTTTTAAGTATCTGAAAAC  50

seq1  ACTTGGATACGATAGAGACAAGGCTCAAATGCACATGTGTTATGTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGATACGATAGAGACAAGGCTCAAATGCACATGTGTTATGTTATAT  100

seq1  CTCAAATCCAGGGCACTACAGAACTATGTTACTTAAAAATACATAGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATCCAGGGCACTACAGAACTATGTTACTTAAAAATACATAGAGGT  150

seq1  TCAGTAGAGCATCACTTGGAAAATGCACTTTTAGTCAGATTTTCTAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGAGCATCACTTGGAAAATGCACTTTTAGTCAGATTTTCTAGGCT  200

seq1  CAAACACAAACATAACTTTTTATTTAGCCCGAACTTTTTATTTATTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAAACATAACTTTTTATTTAGCCCGAACTTTTTATTTATTCTTC  250

seq1  TTATCTTTGTAGACTCATACTTACAAAGATTAAATCAGGCAGTATTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGTAGACTCATACTTACAAAGATTAAATCAGGCAGTATTTTAG  300

seq1  AAATTTTGGAAAGTGCCTGGCATATACTATTCAATAAATTGTTACTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGGAAAGTGCCTGGCATATACTATTCAATAAATTGTTACTACTA  350

seq1  TGAACTATTTTTCAATATTCAATACTTCTGGAGTTATTAAAGTCTTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATTTTTCAATATTCAATACTTCTGGAGTTATTAAAGTCTTTTAC  400

seq1  ATCGATGAATATATAAACAAATGATTAAGCACTTATAAATATGTTACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATGAATATATAAACAAATGATTAAGCACTTATAAATATGTTACAGT  450

seq1  AAATAAAAGTTAATAATAATATTGTTTAATTCCAAAGTAGAATTACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGTTAATAATAATATTGTTTAATTCCAAAGTAGAATTACAAAT  500

seq1  GGGTTCAGTAAATGAAGTTAAAAATATTAACAAAATATGAACATTCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGTAAATGAAGTTAAAAATATTAACAAAATATGAACATTCCATT  550

seq1  GTAAATTTAATTCTTCAAACCAAAAGAAAATACCCCCCATTACCCATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTAATTCTTCAAACCAAAAGAAAATACCCCCCATTACCCATAGA  600

seq1  CTCCTGTATCAGTTGTAGACTACTCATTAAGATATATCAAAAGAAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTATCAGTTGTAGACTACTCATTAAGATATATCAAAAGAAGCAAA  650

seq1  CACTATCCAGTATGTTACATGGATGCTTGCATCATCACTGAATCAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCAGTATGTTACATGGATGCTTGCATCATCACTGAATCAAACAT  700

seq1  ACAATGATGGCCTAACGAGGCCCCGTCAGCTAGTGGCACTGGTGCTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATGGCCTAACGAGGCCCCGTCAGCTAGTGGCACTGGTGCTGCCT  750

seq1  GAGTTTGTATAAATGCATTCTGATGTTTCCAAAGTGAAGAGACTTAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTATAAATGCATTCTGATGTTTCCAAAGTGAAGAGACTTAGGGA  800

seq1  GGATCTCCCTATTTTTAAGCAGCATGCTTACTAGTTCTAAAATATTTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCCCTATTTTTAAGCAGCATGCTTACTAGTTCTAAAATATTTATG  850

seq1  TATCTATGAAATGGTGGCAAAAATAAACATACCACAAATTTGTTTTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATGAAATGGTGGCAAAAATAAACATACCACAAATTTGTTTTTCCC  900

seq1  TTGATAAATGTTAACCTCAGGTTAATGATCAGGTCTCTCACAGTATGTGT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGATAAATGTTAACCTCACGTTAATGATCAGGTCTCTCACAGTATGTGT  950

seq1  CTTTTCCTTGATCATTTCCATTAATACTCAATATGTTATTCTTCATACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTGATCATTTCCATTAATACTCAATATGTTATTCTTCATACAG  1000

seq1  TACAGATTTGATCAATAGTTAATGACTGAGTGAGAACTGTCCCTTTTGTA  1050
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TACAGATTTGATC-ATAGTT-ATGACTGAGTGAGAACTGTCCCTTTTGTA  1048

seq1  AATTGTGGTATATCAAAAAATTAATC-TGGGCCAGGAATGA---------  1090
      |||||||||||||||||||||||||| ||||||||||||||         
seq2  AATTGTGGTATATCAAAAAATTAATCTTGGGCCAGGAATGATCTTTATGA  1098

seq1  --------------------------------------------------  1090
                                                        
seq2  CTGGAGTTAATAGGGGCTCACTGGATTGATTCTTGATAGATTCCCAATGA  1148

seq1  --------------------------------------------------  1090
                                                        
seq2  ATGAGTTGTTCTGGTTCCAGAGAATCAGTTAGAGAAATGGGAAGGGATCT  1198

seq1  --------------------------------------------------  1090
                                                        
seq2  TTGTACTCATCTTCTGTTATCTCTCAAATCTAATGCAAGCTTGGCCAGGA  1248

seq1  ----  1090
          
seq2  ATGA  1252

seq1: chr13_76850891_76852020
seq2: B6Ng01-156A16.g_67_1173 (reverse)

seq1  TCTTGTGAAGGCTCGATGCCCCAGTGTAGGGGAATTAGAGGCTGGGAAAG  50
      ||||||||| |||||||| ||||| ||| |||||||||| |||||| |||
seq2  TCTTGTGAA-GCTCGATG-CCCAG-GTA-GGGAATTAGA-GCTGGG-AAG  44

seq1  TGGGAGTGTGCAGGTGGATGGGGGAACACTCTCATAGAAGCAGGGGGAGG  100
      | |||||||||||   |||||||  ||||||||||||||||| |||||||
seq2  T-GGAGTGTGCAG--TGATGGGG--ACACTCTCATAGAAGCA-GGGGAGG  88

seq1  GAAGGATGTGATAGGGGACTTCCAGGGAAAAAACGAGGAAAGGGGATCAC  150
        | ||||||||| |||||||||||||  ||||||||   | ||||||||
seq2  --AAGATGTGATA-GGGACTTCCAGGG--AAAACGAG---AAGGGATCAC  130

seq1  ATTTTAAATGTAAGTAAAGAAAATATCCAATAAAAAATAATTCGTCAAGT  200
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  ATTTTAAATGTAAGTAAAGAAAATATCCAATAAAAA--TATTCGTCAAGT  178

seq1  TAACAGCAGTTAAAGCATTTGTTACATTAAATGAACAATCTGAACATATG  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAG-TAAAGCATTTGTTACATTAAATGAACAATCTGAACATATG  227

seq1  TTTGTAAGGATTAGAAAGAATGTGTCTAAACCAAAATGATTATCTATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGGATTAGAAAGAATGTGTCTAAACCAAAATGATTATCTATTCT  277

seq1  AAAAAAAACCCTAGATAATAAATGATCACAAATTAAAATATATATTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCCTAGATAATAAATGATCACAAATTAAAATATATATTTCAG  327

seq1  TTGTTTAGGTAGAAGAGATAACCAGTTTTTAAAATCAGTATGTTTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGGTAGAAGAGATAACCAGTTTTTAAAATCAGTATGTTTCTTTT  377

seq1  AAGTGTTTTCCAAAATTTTTTTGAAATGCTTTGTCTCTTCGACCCCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTTCCAAAATTTTTTTGAAATGCTTTGTCTCTTCGACCCCTTAG  427

seq1  GTATTTGACTATGATTTTGGACTGCAAGATGACTTTATGGGCTCAGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGACTATGATTTTGGACTGCAAGATGACTTTATGGGCTCAGCCTT  477

seq1  TCTTGATCTCACTCAGTTGGAGTTAAACAGGTAAGTCTCAACAATCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCTCACTCAGTTGGAGTTAAACAGGTAAGTCTCAACAATCATAC  527

seq1  TATTGTTATGCATCACTATAGAGCTGGCTGGTGTGAAGTTGGAAACACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTATGCATCACTATAGAGCTGGCTGGTGTGAAGTTGGAAACACCA  577

seq1  GTCAGTACAGATTCCTACTGATACCATGTCCTTGCCAGCTGGGTGTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTACAGATTCCTACTGATACCATGTCCTTGCCAGCTGGGTGTCATC  627

seq1  CATCTCACCATCCTATTTTCTCAGCATTATTTTTGGAAGATGTTTCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACCATCCTATTTTCTCAGCATTATTTTTGGAAGATGTTTCCTTT  677

seq1  TATCAAATGTATGCCTTTTCTGTCTTTGTCAAATTTAAGTGACTGAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATGTATGCCTTTTCTGTCTTTGTCAAATTTAAGTGACTGAAGTT  727

seq1  ATGTGTGTTCATGTTTATGTCTTCAATTTTGTTCGATTAGTCTACATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTCATGTTTATGTCTTCAATTTTGTTCGATTAGTCTACATATC  777

seq1  TGTTTGGGAGCACTGCCATATTCCTTTTAATTGCTGTTGTCTGGTAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGAGCACTGCCATATTCCTTTTAATTGCTGTTGTCTGGTAGTTT  827

seq1  ATCTTAAGATCTGAAATTGTAATCACTCCAGCATAAAGTGTTAACTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAGATCTGAAATTGTAATCACTCCAGCATAAAGTGTTAACTTTAT  877

seq1  AAAAGAATTATTTGTTTTTTAATTTATGTTTGTGAGTACACTGTCTCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATTATTTGTTTTTTAATTTATGTTTGTGAGTACACTGTCTCTGT  927

seq1  GTTCAGACACACCAGAAAAGGGCATCAGATCCCATTACAGATGGTTGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGACACACCAGAAAAGGGCATCAGATCCCATTACAGATGGTTGTGA  977

seq1  GCCACCATGTGGTTGCTGGAAATTGAACTTGGATCTCTGGAAGAACGGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGTGGTTGCTGGAAATTGAACTTGGATCTCTGGAAGAACGGTC  1027

seq1  ATTGCTCTTAACCACTAAGCCATCTCTCCAGTCCCTAACATTTTTAAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTAACCACTAAGCCATCTCTCCAGTCCCTAACATTTTTAAAAT  1077

seq1  CAATTTTATATGCATTCCTTATAGGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  CAATTTTATATGCATTCCTTATAGGAATTC  1107