BAC Information

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BAC

Clone NameB6Ng01-156B18
Chromosome13 (Build37)
Map Location 63,530,998 - 63,618,292
singlet/doubletdoublet
Overlap geneFancc, Ptch1
Upstream gene8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
Downstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156B18.bB6Ng01-156B18.g
ACCDH950702DH950703
length1,102207
definitionDH950702|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B18, 5' end.DH950703|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,530,998 - 63,532,106)(63,618,086 - 63,618,292)
sequence
gaattccaggacagacagagctacataatgaaactttggaagtgatgggg
cagcacaacactcaagcactgtattgttacctaaatctgtgaatccttgt
attctcttttccaataatactagattttcagtaaatcactgaaaattaat
tcatttatgtctaagagaagactttcatattaaaaagttagctaatcaga
aaccataaacaccaccagagaatatgcatatcataattacattaagattt
ttaaggagcatttcgggatgaattctagcctgacctgaggctctaccact
cctgttatggttctatcactaggatgaaattccttggggcctctctgtgg
cctagaaaatccaaccaacttcctactggccaggatggcctccctgaagt
agcttttataaatacaagattggtgtaattcttgctggaactatttgcca
aaatatggaagcagttaagagccccattcatttaaaatgtgcatacagct
tcacatggacaacaacatacgtgccatgaccactcacacaagggaacact
gaagagggctggggagctagctcagttgataagatgcctgccattacaag
catgagaacatgaattctatccccagaacacacgttcgttgctgtgtgtg
cgtgtgtatttaaggttttaagtgtgtggcccacatttgtcatctcagca
atggggaggcagagaaaggcataaccccaagggcttgcaaagtcaggtga
cctacaagccaaatgtgatgggtgtgaggagaggcgggggacgaataagg
agggaaagatggggcactcctgacaccacctctggcctctacatacacac
acataaccgccagttgttcaattgtgagcgttaaatctgccatttggaag
caccctaaagccgagggccatccacaataggtatctccccgtcggtcaca
cccgcttagattaatttatgagggatgggatttttcgaatcatctcatac
tagaggaaagtcaggcacacagagtcttcaatatcattgggcctggtcag
atttcatccagcaccccctccaagccccagcaccctaaaactgttcagta
ag
caggacagccaggactacacagagaaaccctgtctcgaaaaaccaaaaaa
aaaaaaagttaaaaagcaggaaagtgtgaagaagacaagaaaatactttt
tagggggttgggtgttttgggttttgtttgtgtgtttacaaaacaggtct
catgtagcccaggcttgcctcaaactcccatagtagagaacagctttgag
ttgctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63530998_63532106
seq2: B6Ng01-156B18.b_47_1148

seq1  GAATTCCAGGACAGACAGAGCTACATAATGAAACTTTGGAAGTGATGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGACAGAGCTACATAATGAAACTTTGGAAGTGATGGGG  50

seq1  CAGCACAACACTCAAGCACTGTATTGTTACCTAAATCTGTGAATCCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAACACTCAAGCACTGTATTGTTACCTAAATCTGTGAATCCTTGT  100

seq1  ATTCTCTTTTCCAATAATACTAGATTTTCAGTAAATCACTGAAAATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTTCCAATAATACTAGATTTTCAGTAAATCACTGAAAATTAAT  150

seq1  TCATTTATGTCTAAGAGAAGACTTTCATATTAAAAAGTTAGCTAATCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATGTCTAAGAGAAGACTTTCATATTAAAAAGTTAGCTAATCAGA  200

seq1  AACCATAAACACCACCAGAGAATATGCATATCATAATTACATTAAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAACACCACCAGAGAATATGCATATCATAATTACATTAAGATTT  250

seq1  TTAAGGAGCATTTCGGGATGAATTCTAGCCTGACCTGAGGCTCTACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGCATTTCGGGATGAATTCTAGCCTGACCTGAGGCTCTACCACT  300

seq1  CCTGTTATGGTTCTATCACTAGGATGAAATTCCTTGGGGCCTCTCTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTATGGTTCTATCACTAGGATGAAATTCCTTGGGGCCTCTCTGTGG  350

seq1  CCTAGAAAATCCAACCAACTTCCTACTGGCCAGGATGGCCTCCCTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAATCCAACCAACTTCCTACTGGCCAGGATGGCCTCCCTGAAGT  400

seq1  AGCTTTTATAAATACAAGATTGGTGTAATTCTTGCTGGAACTATTTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTATAAATACAAGATTGGTGTAATTCTTGCTGGAACTATTTGCCA  450

seq1  AAATATGGAAGCAGTTAAGAGCCCCATTCATTTAAAATGTGCATACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGAAGCAGTTAAGAGCCCCATTCATTTAAAATGTGCATACAGCT  500

seq1  TCACATGGACAACAACATACGTGCCATGACCACTCACACAAGGGAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGGACAACAACATACGTGCCATGACCACTCACACAAGGGAACACT  550

seq1  GAAGAGGGCTGGGGAGCTAGCTCAGTTGATAAGATGCCTGCCATTACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGCTGGGGAGCTAGCTCAGTTGATAAGATGCCTGCCATTACAAG  600

seq1  CATGAGAACATGAATTCTATCCCCAGAACACACGTTCGTTGCTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAACATGAATTCTATCCCCAGAACACACGTTCGTTGCTGTGTGTG  650

seq1  CGTGTGTATTTAAGGTTTTAAGTGTGTGGCCCACATTTGTCATCTCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTATTTAAGGTTTTAAGTGTGTGGCCCACATTTGTCATCTCAGCA  700

seq1  ATGGGGAGGCAGAGAAAGGCATAACCCCAAGGGCTTGCAAAGTCAGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAGGCAGAGAAAGGCATAACCCCAAGGGCTTGCAAAGTCAGGTGA  750

seq1  CCTACAAGCCAAATGTGATGGGTGTGAGGAGAGGCGGGGGACGAATAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAGCCAAATGTGATGGGTGTGAGGAGAGGCGGGGGACGAATAAGG  800

seq1  AGGGAAAGATGGGGCACTCCTGACACCACCTCTGGCCTCTACATACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGATGGGGCACTCCTGACACCACCTCTGGCCTCTACATACACAC  850

seq1  ACATAACCGCCAGTTGTTCAATTGTGAGCGTTAAATCTGCCATTTGGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACCGCCAGTTGTTCAATTGTGAGCGTTAAATCTGCCATTTGGAAG  900

seq1  CACCCTAAAGGCGAGGGCCATCCACAAATAGGTATCT-CACGTCGGTCAC  949
      |||||||||| |||||||||||||| ||||||||||| | ||||||||||
seq2  CACCCTAAAGCCGAGGGCCATCCAC-AATAGGTATCTCCCCGTCGGTCAC  949

seq1  ACCCGCTTAGATTAATTTAATGAGGGATGGGATTTTTCGAATCATCTCAT  999
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCCGCTTAGATTAATTT-ATGAGGGATGGGATTTTTCGAATCATCTCAT  998

seq1  ACTAGAGGAAAAGTCCAGGCACACAGAGGTCTTCAATATCATT-GGCCTG  1048
      |||||||| ||||| |||||||||||| ||||||||||||||| ||||||
seq2  ACTAGAGG-AAAGT-CAGGCACACAGA-GTCTTCAATATCATTGGGCCTG  1045

seq1  TTCCAAGATTTTCATCCAGCACCCCCTCCAAGCCCAAGCACCTAAAAACT  1098
       ||  ||| |||||||||||||||||||||||||| ||||||  ||||||
seq2  GTC--AGA-TTTCATCCAGCACCCCCTCCAAGCCCCAGCACCCTAAAACT  1092

seq1  GTTCCAGTAAG  1109
      ||| |||||||
seq2  GTT-CAGTAAG  1102

seq1: chr13_63618086_63618292
seq2: B6Ng01-156B18.g_72_278 (reverse)

seq1  ACAGCAACTCAAAGCTGTTCTCTACTATGGGAGTTTGAGGCAAGCCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACTCAAAGCTGTTCTCTACTATGGGAGTTTGAGGCAAGCCTGGG  50

seq1  CTACATGAGACCTGTTTTGTAAACACACAAACAAAACCCAAAACACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGAGACCTGTTTTGTAAACACACAAACAAAACCCAAAACACCCAA  100

seq1  CCCCCTAAAAAGTATTTTCTTGTCTTCTTCACACTTTCCTGCTTTTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAAAAAGTATTTTCTTGTCTTCTTCACACTTTCCTGCTTTTTAAC  150

seq1  TTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGC  200

seq1  TGTCCTG  207
      |||||||
seq2  TGTCCTG  207