BAC Information

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BAC

Clone NameB6Ng01-156G21
Chromosome13 (Build37)
Map Location 83,625,108 - 83,752,250
singlet/doubletdoublet
Overlap geneMef2c
Upstream geneLOC667018
Downstream geneLOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156G21.bB6Ng01-156G21.g
ACCDH950936DH950937
length1,1641,080
definitionDH950936|Mus musculus domesticus DNA, BAC clone: B6Ng01-156G21, 5' end.DH950937|Mus musculus domesticus DNA, BAC clone: B6Ng01-156G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,625,108 - 83,626,290)(83,751,167 - 83,752,250)
sequence
gaattcccaatggtttttcatggatgttactttcttttccttccagggtt
tataaactgaacaatctgagtatggtattgatcctctaaagaatgtgaag
aacaaaagttaagatccccttacatatacaaacatagtcacccaacaaac
ataagtattggtgactttcagtctcccttcacactatggggattgtacag
tacagaaaaacacgtatttagtcttcaaaaagtatattcaaattagtttg
tcagataagagtcaagaactctgatatgagaatcaaagagctgtttcatg
gccgacatttaataattatttataagaagtataatcagacacacagattt
gtcttattcctttattatcatacccaaacaataacagctattaaaataat
gaatcactcatacatttataaatttaattaacttttataaaccatctaat
tttgtttttagataaataaacagacacagactgccacagggtctcctgga
gagcaatatggacaagaataaacaacagtaacttgagatgagagtggagt
tgtagtaagtgaagagaacagtaactccagagagaggatttgttacctct
ctgtggagagatgggcagaccagggagatggacagagcaaggagatggga
ggagctgggagatgggctgagttgagaaggagattgggcccgagcagtgg
ggaaagcagctggcttcttgcaagtataagcttagttccatgtttgtgag
ccagacattgactccctacaataaccttctttctctgaaagcactgctac
cagactcagaaatgtatgtataatccatcttgtatctcctgtactaaagc
tctcaaagtttttaagatatttctgaaagtgttctgccccttcaaggaaa
accatggaaatacccctttcacttgaaactactttcctattaccattcat
gaagttaggtccacaagaacagactgaaaggaaagtaagcacactgctgt
cgtgtcttccctctgctctatgcactggaatatgttcagttttcataaga
tttctgaaagaattttaaacggattttagaaatgtggaccttaaacaatt
cagtaaattctggccttagccctattccgcaagtaagcttttgccataca
ttctatatcacttg
gaattcctaaggacagggactctgaaaagcaaagccccccttttctttcc
tgtagttaagtttatactggtgtctatatctcaccttccctatcaaaatg
taaaacagtgtctggactcacaggaacgttagagtctttactgtacagct
ttatctcatcaccacagattatgtggatcaagaataggtgctggattttc
ttcaacggtcttgagtaggtaactagtagaaagaagtgttacacgctact
agtatttaatggtcaaaaaaaaaaaggtgttttaaaataaatatgctgca
aacctttccacagcatgcttagtctcagtcttgcattggaggtcgggctg
cacctgccaagcacatcagcactgtccccatctccgtgcaatcctatcat
gactcttcccactgtactgccaccaacctcctacccattcctcattccaa
acccagcttccagagagcacagctgtgccttttaactgagtttcctcata
cctgggaaagaacagattccttagaatttcatgagctaatgtagattttg
aatccattaatcaaaaggtcactatttgctttcttaacaatataattatt
tccatctggcactagctaaataactgaacagtgcttctaggaccaacatc
aaaagtgccagtagcatttccgaaataggactctcagctcagctttccac
tgggacatgccctgaggttggctggatcatttgttatttggaggctcctg
tctattagattcatactccagttcctgttatttttacagtattaaagtgg
agagccagtttttattagcataggcagttataaattgagtataaggatta
gaataaataggatgaagtaatagaacaaagagtcggaaaacatctagtga
agtcattgtaaaacttggagcttttcttgtagataaaatacttataaatg
gagcacatttcgtagaaaagtgacttggaaagcctggtagtatcactaat
atattctgagcagatctataaggctaaatcactgttattcatttattggg
caagcttaaaattcttagcttgatactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_83625108_83626290
seq2: B6Ng01-156G21.b_48_1211

seq1  GAATTCCCAATGGTTTTTCATGGATGTTACTTTCTTTTCCTTCCAGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAATGGTTTTTCATGGATGTTACTTTCTTTTCCTTCCAGGGTT  50

seq1  TATAAACTGAACAATCTGAGTATGGTATTGATCCTCTAAAGAATGTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTGAACAATCTGAGTATGGTATTGATCCTCTAAAGAATGTGAAG  100

seq1  AACAAAAGTTAAGATCCCCTTACATATACAAACATAGTCACCCAACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGTTAAGATCCCCTTACATATACAAACATAGTCACCCAACAAAC  150

seq1  ATAAGTATTGGTGACTTTCAGTCTCCCTTCACACTATGGGGATTGTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTATTGGTGACTTTCAGTCTCCCTTCACACTATGGGGATTGTACAG  200

seq1  TACAGAAAAACACGTATTTAGTCTTCAAAAAGTATATTCAAATTAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAAACACGTATTTAGTCTTCAAAAAGTATATTCAAATTAGTTTG  250

seq1  TCAGATAAGAGTCAAGAACTCTGATATGAGAATCAAAGAGCTGTTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAAGAGTCAAGAACTCTGATATGAGAATCAAAGAGCTGTTTCATG  300

seq1  GCCGACATTTAATAATTATTTATAAGAAGTATAATCAGACACACAGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACATTTAATAATTATTTATAAGAAGTATAATCAGACACACAGATTT  350

seq1  GTCTTATTCCTTTATTATCATACCCAAACAATAACAGCTATTAAAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTCCTTTATTATCATACCCAAACAATAACAGCTATTAAAATAAT  400

seq1  GAATCACTCATACATTTATAAATTTAATTAACTTTTATAAACCATCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACTCATACATTTATAAATTTAATTAACTTTTATAAACCATCTAAT  450

seq1  TTTGTTTTTAGATAAATAAACAGACACAGACTGCCACAGGGTCTCCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTAGATAAATAAACAGACACAGACTGCCACAGGGTCTCCTGGA  500

seq1  GAGCAATATGGACAAGAATAAACAACAGTAACTTGAGATGAGAGTGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATATGGACAAGAATAAACAACAGTAACTTGAGATGAGAGTGGAGT  550

seq1  TGTAGTAAGTGAAGAGAACAGTAACTCCAGAGAGAGGATTTGTTACCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAAGTGAAGAGAACAGTAACTCCAGAGAGAGGATTTGTTACCTCT  600

seq1  CTGTGGAGAGATGGGCAGACCAGGGAGATGGACAGAGCAAGGAGATGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGAGATGGGCAGACCAGGGAGATGGACAGAGCAAGGAGATGGGA  650

seq1  GGAGCTGGGAGATGGGCTGAGTTGAGAAGGAGATTGGGCCCGAGCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGGAGATGGGCTGAGTTGAGAAGGAGATTGGGCCCGAGCAGTGG  700

seq1  GGAAAGCAGCTGGCTTCTTGCAAGTATAAGCTTAGTTCCATGTTTGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAGCTGGCTTCTTGCAAGTATAAGCTTAGTTCCATGTTTGTGAG  750

seq1  CCAGACATTGACTCCCTACAATAACCTTCTTTCTCTGAAAGCACTGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATTGACTCCCTACAATAACCTTCTTTCTCTGAAAGCACTGCTAC  800

seq1  CAGACTCAGAAATGTATGTATAATCCATCTTGTATCTCCTGTACTAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGAAATGTATGTATAATCCATCTTGTATCTCCTGTACTAAAGC  850

seq1  TCTCAAAGTTTTTAAGATATTTCTGAAAGTGTTCTGCCCCTTCAAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGTTTTTAAGATATTTCTGAAAGTGTTCTGCCCCTTCAAGGAAA  900

seq1  ACCATGGAAATACCCCTTTCACTTGAAACTACTTTCCTATTAACCATCCA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  ACCATGGAAATACCCCTTTCACTTGAAACTACTTTCCTATT-ACCATTCA  949

seq1  TGAAGTTAGGTCCACAAGAACAGACTGAAAGGAAAGTTAAGGCACACTGC  1000
      |||||||||||||||||||||||||||||||||||||  | |||||||||
seq2  TGAAGTTAGGTCCACAAGAACAGACTGAAAGGAAAGT--AAGCACACTGC  997

seq1  TGTCGTGTCTCCCTCCTGCTCTATGCACTGGAAATATGTTCAGTTTTCAA  1050
      |||||||||| ||  |||||||||||||||| ||||||||||||||||| 
seq2  TGTCGTGTCTTCCCTCTGCTCTATGCACTGG-AATATGTTCAGTTTTCA-  1045

seq1  TAAAGATTTCTGAAAGATATTTTAAAACGATATTTAGAAAATGT-GACTT  1099
        ||||||||||||||| ||||||||  ||| ||||| |||||| ||| |
seq2  -TAAGATTTCTGAAAGA-ATTTTAAACGGAT-TTTAG-AAATGTGGACCT  1091

seq1  TTAAAACAAAATTTCCAGTATAATTCTGGCTATAGCTCTAATCAGCAATG  1149
      |  ||||||    | ||||| |||||||||  |||| ||| || |||| |
seq2  T--AAACAA----TTCAGTA-AATTCTGGCCTTAGCCCTATTCCGCAA-G  1133

seq1  TAGGCTTTATGCCATACATTCTATATCCTACTTG  1183
      || ||||| ||||||||||||||||||  |||||
seq2  TAAGCTTT-TGCCATACATTCTATATC--ACTTG  1164

seq1: chr13_83751167_83752250
seq2: B6Ng01-156G21.g_66_1145 (reverse)

seq1  AAAAGTATCAAGCTAGAAATTTTTAAGCTTGCCC-ATAAATGAATAACAG  49
      ||||||||||||||| | | |||||||||||||| |||||||||||||||
seq2  AAAAGTATCAAGCTA-AGAATTTTAAGCTTGCCCAATAAATGAATAACAG  49

seq1  TGATTTAGCCTGTATAGGTCTTGCTCAGAATATATTAGTGATACTACCAG  99
      ||||||||||| ||||| || |||||||||||||||||||||||||||||
seq2  TGATTTAGCCT-TATAGATC-TGCTCAGAATATATTAGTGATACTACCAG  97

seq1  GCTTTCCAAGTCACTTTTCTACGAAATGTGCTCCATTTATAAGTATTTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCAAGTCACTTTTCTACGAAATGTGCTCCATTTATAAGTATTTTA  147

seq1  TCTACAAGAAAAGCTCCAAGTTTTTACAATGACTTCACTAGATGTTTTCC  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTACAAGAAAAGCTCCAAG-TTTTACAATGACTTCACTAGATGTTTTCC  196

seq1  GACTCTTTTGTTCTATTACTTCATCCTATTTATTCTAATCCTTATACTCA  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTC-TTTGTTCTATTACTTCATCCTATTTATTCTAATCCTTATACTCA  245

seq1  ATTTATAACTGCCTATGCTAATAAAAACTGGCTCTCCACTTTAATACTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAACTGCCTATGCTAATAAAAACTGGCTCTCCACTTTAATACTGT  295

seq1  AAAAATAACAGGAACTGGAGTATGAATCTAATAGACAGGAGCCTCCAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACAGGAACTGGAGTATGAATCTAATAGACAGGAGCCTCCAAAT  345

seq1  AACAAATGATCCAGCCAACCTCAGGGCATGTCCCAGTGGAAAGCTGAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGATCCAGCCAACCTCAGGGCATGTCCCAGTGGAAAGCTGAGCT  395

seq1  GAGAGTCCTATTTCGGAAATGCTACTGGCACTTTTGATGTTGGTCCTAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCCTATTTCGGAAATGCTACTGGCACTTTTGATGTTGGTCCTAGA  445

seq1  AGCACTGTTCAGTTATTTAGCTAGTGCCAGATGGAAATAATTATATTGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTTCAGTTATTTAGCTAGTGCCAGATGGAAATAATTATATTGTT  495

seq1  AAGAAAGCAAATAGTGACCTTTTGATTAATGGATTCAAAATCTACATTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCAAATAGTGACCTTTTGATTAATGGATTCAAAATCTACATTAG  545

seq1  CTCATGAAATTCTAAGGAATCTGTTCTTTCCCAGGTATGAGGAAACTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAATTCTAAGGAATCTGTTCTTTCCCAGGTATGAGGAAACTCAG  595

seq1  TTAAAAGGCACAGCTGTGCTCTCTGGAAGCTGGGTTTGGAATGAGGAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGCACAGCTGTGCTCTCTGGAAGCTGGGTTTGGAATGAGGAATG  645

seq1  GGTAGGAGGTTGGTGGCAGTACAGTGGGAAGAGTCATGATAGGATTGCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGGTTGGTGGCAGTACAGTGGGAAGAGTCATGATAGGATTGCAC  695

seq1  GGAGATGGGGACAGTGCTGATGTGCTTGGCAGGTGCAGCCCGACCTCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGGGACAGTGCTGATGTGCTTGGCAGGTGCAGCCCGACCTCCAA  745

seq1  TGCAAGACTGAGACTAAGCATGCTGTGGAAAGGTTTGCAGCATATTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGACTGAGACTAAGCATGCTGTGGAAAGGTTTGCAGCATATTTATT  795

seq1  TTAAAACACCTTTTTTTTTTTGACCATTAAATACTAGTAGCGTGTAACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACACCTTTTTTTTTTTGACCATTAAATACTAGTAGCGTGTAACAC  845

seq1  TTCTTTCTACTAGTTACCTACTCAAGACCGTTGAAGAAAATCCAGCACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTACTAGTTACCTACTCAAGACCGTTGAAGAAAATCCAGCACCT  895

seq1  ATTCTTGATCCACATAATCTGTGGTGATGAGATAAAGCTGTACAGTAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGATCCACATAATCTGTGGTGATGAGATAAAGCTGTACAGTAAAG  945

seq1  ACTCTAACGTTCCTGTGAGTCCAGACACTGTTTTACATTTTGATAGGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAACGTTCCTGTGAGTCCAGACACTGTTTTACATTTTGATAGGGAA  995

seq1  GGTGAGATATAGACACCAGTATAAACTTAACTACAGGAAAGAAAAGGGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATATAGACACCAGTATAAACTTAACTACAGGAAAGAAAAGGGGG  1045

seq1  GCTTTGCTTTTCAGAGTCCCTGTCCTTAGGAATTC  1084
      |||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTTTTCAGAGTCCCTGTCCTTAGGAATTC  1080