BAC Information

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BAC

Clone NameB6Ng01-156H21
Chromosome13 (Build37)
Map Location 96,446,150 - 96,595,930
singlet/doubletdoublet
Overlap geneIqgap2, F2rl2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r
Downstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156H21.bB6Ng01-156H21.g
ACCDH950982DH950983
length634636
definitionDH950982|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H21, 5' end.DH950983|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,446,150 - 96,446,784)(96,595,360 - 96,595,930)
sequence
gaattccaggtggtggtagcgcacacctttaatcccagcacttgggaggc
agaggcaggtagatttctgagttcgaggccagcctagtctacacagtgag
ttccaggacagccagggctacacagagaaaccctgtctcgaaaaaacaaa
acaaaacaaagagaaagaattctgacaaattaaatgtaaggcatatagta
ttctgcttctgtatagataaaacctctggtaactcagctgccttagaaag
tatagactgactataacttagcaatctccctacagagaggcattaggctg
ccaccatttttttttattttattttttacagaaaacaacctttatacata
agaaacaggaaaaatatgtattctatttccccagtaatggaagtcaaacc
caagtaattttaaagtccctaaaattttataatttttcatattactattt
gtatatttatatagctgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
acataacttgtaggagtcagttttctccttctaccagacgggtcctagca
acaagcctctttacccactgagccatcttggtggcccattttcatattat
taggtcagatgaacttatttatatcagagttaat
gaattcttaagaagctgtaggtcctcactcctgtttggtgggctttgtat
gtgtctggttttgcccagcctagttgtaaggctttgtcccatcatgcttg
tgtccgtcccttattcccatgcagagatgacagtaaataactccttagct
ctcagcctgtgggaggagagcagtagatggctaaggatctggtaaatagc
tttcccttcttaagaaaccttccagcttcaggtattgtgagtacttcctt
ccctccctccctctcctaatttctttcttccttccttccttccttccttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttctctctctctctctctctct
ctctctctctctctctctctccctctctttcttttttctgctatatcttt
attagttcttgagaatttcatacaatattttgaccatattcaaatctccc
ccaactcctcccagatctaccccccacctccatcccttctctacccacct
aactctgtgttgtctctttctttttaaaacctccctaagtcaaatttgtg
ctgcccacacacccttggtatacgttttccactaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96446150_96446784
seq2: B6Ng01-156H21.b_45_678

seq1  GAATTCCAGGTGGTGGTAGCGCACACCTTTAATCCCAGCACTTGGGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGGTGGTAGCGCACACCTTTAATCCCAGCACTTGGGAGGC  50

seq1  AGAGGCAGGTAGATTTCTGAGTTCGAGGCCAGCCTAGTCTACACAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGTAGATTTCTGAGTTCGAGGCCAGCCTAGTCTACACAGTGAG  100

seq1  TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAA  150

seq1  ACAAAACAAAGAGAAAGAATTCTGACAAATTAAATGTAAGGCATATAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAGAGAAAGAATTCTGACAAATTAAATGTAAGGCATATAGTA  200

seq1  TTCTGCTTCTGTATAGATAAAACCTCTGGTAACTCAGCTGCCTTAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCTGTATAGATAAAACCTCTGGTAACTCAGCTGCCTTAGAAAG  250

seq1  TATAGACTGACTATAACTTAGCAATCTCCCTACAGAGAGGCATTAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACTGACTATAACTTAGCAATCTCCCTACAGAGAGGCATTAGGCTG  300

seq1  CCACCATTTTTTTTTATTTTATTTTTTACAGAAAACAACCTTTATACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATTTTTTTTTATTTTATTTTTTACAGAAAACAACCTTTATACATA  350

seq1  AGAAACAGGAAAAATATGTATTCTATTTCCCCAGTAATGGAAGTCAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGGAAAAATATGTATTCTATTTCCCCAGTAATGGAAGTCAAACC  400

seq1  CAAGTAATTTTAAAGTCCCTAAAATTTTATAATTTTTCATATTACTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATTTTAAAGTCCCTAAAATTTTATAATTTTTCATATTACTATTT  450

seq1  GTATATTTATATAGCTGTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTATATAGCTGTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  500

seq1  ACATAACTTGTAGGAGTCAGTTTTCTCCTTCTACCAGACGGGTCCTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTTGTAGGAGTCAGTTTTCTCCTTCTACCAGACGGGTCCTAGCA  550

seq1  ACAAGCCTCTTTACCCACTGAGCCATCTTGGTGGCCCATTTTCATATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTCTTTACCCACTGAGCCATCTTGGTGGCCCATTTTCATATTAT  600

seq1  TAAGGTCAGATGAACTTATTTTTATCAGAGTTAAT  635
      | ||||||||||||||||||| |||||||||||||
seq2  T-AGGTCAGATGAACTTATTTATATCAGAGTTAAT  634

seq1: chr13_96595360_96595930
seq2: B6Ng01-156H21.g_68_642 (reverse)

seq1  AAAAAGAAAGAGACAACACAGAGTTAGGTGGGTAGAGAAGGGATGGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGAGACAACACAGAGTTAGGTGGGTAGAGAAGGGATGGAGGT  50

seq1  GGGGGGTAGATCTGGGAGGAGTTGGGGGAGATTTGAATATGGTCAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTAGATCTGGGAGGAGTTGGGGGAGATTTGAATATGGTCAAAATA  100

seq1  TTGTATGAAATTCTCAAGAACTAATAAAGATATAGCAGAAAAAAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAAATTCTCAAGAACTAATAAAGATATAGCAGAAAAAAGAAAGA  150

seq1  GAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG----AGA  196
      |||||||||||||||||||||||||||||||||||||||||||    |||
seq2  GAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGA  200

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  250

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGA  300

seq1  AAGAAATTAGGAGAGGGAGGGAGGGAAGGAAGTACTCACAATACCTGAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAGGAGAGGGAGGGAGGGAAGGAAGTACTCACAATACCTGAAG  350

seq1  CTGGAAGGTTTCTTAAGAAGGGAAAGCTATTTACCAGATCCTTAGCCATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGTTTCTTAAGAAGGGAAAGCTATTTACCAGATCCTTAGCCATC  400

seq1  TACTGCTCTCCTCCCACAGGCTGAGAGCTAAGGAGTTATTTACTGTCATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTCTCCTCCCACAGGCTGAGAGCTAAGGAGTTATTTACTGTCATC  450

seq1  TCTGCATGGGAATAAGGGACGGACACAAGCATGATGGGACAAAGCCTTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGGGAATAAGGGACGGACACAAGCATGATGGGACAAAGCCTTAC  500

seq1  AACTAGGCTGGGCAAAACCAGACACATACAAAGCCCACCAAACAGGAGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCTGGGCAAAACCAGACACATACAAAGCCCACCAAACAGGAGTG  550

seq1  AGGACCTACAGCTTCTTAAGAATTC  571
      |||||||||||||||||||||||||
seq2  AGGACCTACAGCTTCTTAAGAATTC  575