BAC Information

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BAC

Clone NameB6Ng01-157K23
Chromosome13 (Build37)
Map Location 109,116,570 - 109,117,571
singlet/doubletsinglet
Overlap geneDepdc1b
Upstream geneLOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524
Downstream genePde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157K23.bB6Ng01-157K23.g
ACCDH951851DH951852
length9941,151
definitionDH951851|Mus musculus domesticus DNA, BAC clone: B6Ng01-157K23, 5' end.DH951852|Mus musculus domesticus DNA, BAC clone: B6Ng01-157K23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtaaattagccactgactttttcccattagctagattcgtctt
ggatggagtgtatttaaacctgtaaatcattggtgaaggtgcccgtgact
tgcgttgagagcaagccgattagggtagagccagctgttgcgcatgcgca
ggcttctgtgcctggtgctggagcgagatagcagtccacactagtgctct
agggagggccgcctttgatgttctgactggtgtgtctggatccagcacct
ttcctcaggtgagacgtgctaaagccaggttctcatggaagctgaagagg
agagagtaagccaaagcagggtagattcaaaatggatggagagtcagccg
tggtggaattgagggaatacttcaaaagactcagatttctggtagggagt
gctttttaagtagtgtagaaagtgctgggaaggacaagaagaggagctct
tgttggaaagaaagaaactaacattccagagcatctcctgtgttgcaaac
tcaatatgtaatttgtcatttaactcgagtcctgaagatgtgtcgatagg
acgtttctaattatgtgacttattttctctctttttggagagagagagag
tcctactctctagtccaggatggcttgaacttgtgacagtcctggcccaa
cctccgagtgcagagattatgggtgtgcatcaccaccccgagctttccta
aatgtgaaggttgggaaatgaatcagcgaggcttacaaacatgttcagag
tcatgcgttagaaagggagaagtcatcatttgagtcaaggactgtcgctg
aagtctgtgttcttgtgctgtgccagctatctcagcttccacaagatgag
gtgacgtagctaacagacagatagtggtgaataaacactggactcatggg
aatgtatggtgtggccacgcacctgtggcccctaggtcatctgaagctta
gggcctaaattgcctcagtaagaaagagcttctcaaagatgaag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacgcatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atgaatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggtctagtcaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaagtatctgagagctaagggatcttcaccctatag
gtcaccacattatgactacagtacccttgagctctgactctagctgcata
gtatcaagaatggcctagtcgcatccttgaaagagaagcccatgtcacgc
gaactttgtgtgccggaccgaatgccagggccaaggggggagatgagtgc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_109116570_109117571
seq2: B6Ng01-157K23.b_44_1037

seq1  GAATTCTGTAAATTAGCCACTGACTTTTTCCCATTAGCTAGATTCGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAATTAGCCACTGACTTTTTCCCATTAGCTAGATTCGTCTT  50

seq1  GGATGGAGTGTATTTAAACCTGTAAATCATTGGTGAAGGTGCCCGTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGTGTATTTAAACCTGTAAATCATTGGTGAAGGTGCCCGTGACT  100

seq1  TGCGTTGAGAGCAAGCCGATTAGGGTAGAGCCAGCTGTTGCGCATGCGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTGAGAGCAAGCCGATTAGGGTAGAGCCAGCTGTTGCGCATGCGCA  150

seq1  GGCTTCTGTGCCTGGTGCTGGAGCGAGATAGCAGTCCACACTAGTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGTGCCTGGTGCTGGAGCGAGATAGCAGTCCACACTAGTGCTCT  200

seq1  AGGGAGGGCCGCCTTTGATGTTCTGACTGGTGTGTCTGGATCCAGCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGCCGCCTTTGATGTTCTGACTGGTGTGTCTGGATCCAGCACCT  250

seq1  TTCCTCAGGTGAGACGTGCTAAAGCCAGGTTCTCATGGAAGCTGAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGGTGAGACGTGCTAAAGCCAGGTTCTCATGGAAGCTGAAGAGG  300

seq1  AGAGAGTAAGCCAAAGCAGGGTAGATTCAAAATGGATGGAGAGTCAGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTAAGCCAAAGCAGGGTAGATTCAAAATGGATGGAGAGTCAGCCG  350

seq1  TGGTGGAATTGAGGGAATACTTCAAAAGACTCAGATTTCTGGTAGGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAATTGAGGGAATACTTCAAAAGACTCAGATTTCTGGTAGGGAGT  400

seq1  GCTTTTTAAGTAGTGTAGAAAGTGCTGGGAAGGACAAGAAGAGGAGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAAGTAGTGTAGAAAGTGCTGGGAAGGACAAGAAGAGGAGCTCT  450

seq1  TGTTGGAAAGAAAGAAACTAACATTCCAGAGCATCTCCTGTGTTGCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAAGAAAGAAACTAACATTCCAGAGCATCTCCTGTGTTGCAAAC  500

seq1  TCAATATGTAATTTGTCATTTAACTCGAGTCCTGAAGATGTGTCGATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAATATGTAATTTGTCATTTAACTCGAGTCCTGAAGATGTGTCGATAGG  550

seq1  ACGTTTCTAATTATGTGACTTATTTTCTCTCTTTTTGGAGAGAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCTAATTATGTGACTTATTTTCTCTCTTTTTGGAGAGAGAGAGAG  600

seq1  TCCTACTCTCTAGTCCAGGATGGCTTGAACTTGTGACAGTCCTGGCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCTACTCTCTAGTCCAGGATGGCTTGAACTTGTGACAGTCCTGGCCCAA  650

seq1  CCTCCGAGTGCAGAGATTATGGGTGTGCATCACCACCCCGAGCTTTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGAGTGCAGAGATTATGGGTGTGCATCACCACCCCGAGCTTTCCTA  700

seq1  AATGTGAAGGTTGGGAAATGAATCAAGCGAGGCTTACAAACATGTTCAGA  750
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATGTGAAGGTTGGGAAATGAATC-AGCGAGGCTTACAAACATGTTCAGA  749

seq1  GTCATGCGTTAGAAAGGGAGAAGTCATCATTTGAGTCAAGGACTGTCGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCGTTAGAAAGGGAGAAGTCATCATTTGAGTCAAGGACTGTCGCT  799

seq1  GAAGTCTGTGTTCTTGTGCTGTGCCAGGCTATCTCAGCTTCCACAAGATG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGTCTGTGTTCTTGTGCTGTGCCA-GCTATCTCAGCTTCCACAAGATG  848

seq1  AGGTTGACGTAGCTTAACAGAGAGATTAGTGGTGAATAAACACAGGGACT  900
      ||| ||||||||| ||||||| ||| |||||||||||||||||  |||||
seq2  AGG-TGACGTAGC-TAACAGACAGA-TAGTGGTGAATAAACAC-TGGACT  894

seq1  CATGGGAATGTTTGGTGTGGCCAGCGCACCTGTAGCCACCTAGTTCATGT  950
      ||||||||||| ||||||||||| ||||||||| ||| ||||| |||| |
seq2  CATGGGAATGTATGGTGTGGCCA-CGCACCTGTGGCC-CCTAGGTCATCT  942

seq1  GATGCTTAGTGACTAATATATGCCTCCGTTAAGAAAG-TCTTCTCAA--A  997
      || |||||| | |||| || |||||| | ||||||||  ||||||||  |
seq2  GAAGCTTAGGGCCTAA-AT-TGCCTCAG-TAAGAAAGAGCTTCTCAAAGA  989

seq1  TGAAG  1002
      |||||
seq2  TGAAG  994