BAC Information

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BAC

Clone NameB6Ng01-158F04
Chromosome13 (Build37)
Map Location 23,007,727 - 23,008,933
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
Downstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158F04.bB6Ng01-158F04.g
ACCDH952303DH952304
length1,1841,167
definitionDH952303|Mus musculus domesticus DNA, BAC clone: B6Ng01-158F04, 5' end.DH952304|Mus musculus domesticus DNA, BAC clone: B6Ng01-158F04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatccacctctgataaggaggaagaagagcctttggattctggag
aagatgcatccgaattagaggaggaagcagctagatatcataatcctgac
tgccccccttttatgacctcctcctaagcctaggaaaatggacaagaaaa
ggagacaccctcagtcctgtattgtgtaagcagtgcagaaggctagagaa
taaggggggaaatttgatgcttctttcagtagtaagcatggatgatggag
ttccagaatggaaacccatctcctttaaacttttaaaggaattaaacaaa
agcacttctaagtatggctccacattgggtgctatggaatgctggggtcc
agccttgacacaggatctgggaaatttggaaggtgcataataaacacaca
gagacaacttttttgagtataagctgacagtcaaatttcgagggttgagg
ttctctctctctctctctctctctctcttcctccctctgtctgttacagt
ctgtcagtctctctgtctcacttgctcgcttatagcttgaggctgcatgc
tttctaaactcttctgcacactctgcttttctccagtgtgcttttctttt
cctgaactcccacactcatacacacctctgtgcactttcctttcattcat
tcacacaatcttcacacacacctcatatgctctcctttcaatctctcaca
cacactcctcttacacactctctcatgcacacctcactctcccttcacac
tctctctactctctttcactcactccacactcccctctctgctcacacat
ttctctcacctttaacttgccccatacttttattccaaaagcaggtagag
gaaaagatattgtataatcattgtcaaatcaaattcagaaaaatgaccac
atcctcacaaagaatcaagaattacaattgttcttcaaagtttcaagctt
ctcctattcccagggcctgtggtcaaatggtaatattgcaaactttaatt
tttgacttatgtactgcaagctcagagctctgaggttagctacttgcatt
ttctgtagtctatgataaatgaattggcaagctgctagcatggccagaag
agtcagtaacccttactcagcagtctgctagcctttctgcttctgtcatg
ccacacgaccttctagagtccaggttttgactta
gaattcttactttcctttttataatcccttgatatttctcagttctcata
ttattctagataggatatcaagtactttatttaatcatcatggagagagt
aaatggtcttgttactgattttagtgaggttggtttgagtttccatttag
aatgatgttggctgtgtgttttatgtaaatcacttttaatatattaacat
atgtcccttgccattctagtctctccaagactttaataagaatgaaatgg
agaattttgtcaaaggctaattagatatcacatggtttttgccttttagt
ttgtttatgtagtaggttgcatttaatgatttaaagcaataaagtgttat
ataagcaaaaaccatttgtgtatcccttggatgaagccaatatgatcatg
gtggatactgtttttggagtgttcttgaatttaatttgcaaaaattatta
agaatgtttgtctccatgttcataaaagatattgatctataatttccttc
tttttttttttttcttgattgggtctataacaggcccccagcccttagta
caactgagtttgtgatagagatatgattcaggttgtaaaactcaccatgt
agagagcacaacttcccaaaactaaaagaaaggcctacttcaccaaagtc
catatggttctgagaaggtttcaaaatgtactacccaggccttttgggct
tctatagttctacttctggctaactgttctttttaactgacgtatgtcat
cccaagatatgttttttttctgtttcaatacttacaatgagaggctcagt
gctacactgggatcccaatttccctagtgtagtcactggtccagccactg
tccagcacattctattggcttaaatccatgtctgagcagtattcttctag
taactaccccacatgtctgggtgaagactttacatcagatcatacaggct
ttcatcaaaagaattaggaattgtttttttagtttctattttgtagaata
ctttgaggtgttggggcttcagtccttaatatcggaatattctgcctctg
aaatcatgttttttgacctccattttttttgtaacctaatttaagtgcct
acttctaattggaaggacttaggtatgttaatgctacactggaggtaact
gagattggaagtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23007727_23008933
seq2: B6Ng01-158F04.b_49_1232

seq1  GAATTCATCCACCTCTGATAAGGAGGAAGAAGAGCCTTTGGATTCTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCACCTCTGATAAGGAGGAAGAAGAGCCTTTGGATTCTGGAG  50

seq1  AAGATGCATCCGAATTAGAGGAGGAAGCAGCTAGATATCATAATCCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCATCCGAATTAGAGGAGGAAGCAGCTAGATATCATAATCCTGAC  100

seq1  TGCCCCCCTTTTATGACCTCCTCCTAAGCCTAGGAAAATGGACAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCCTTTTATGACCTCCTCCTAAGCCTAGGAAAATGGACAAGAAAA  150

seq1  GGAGACACCCTCAGTCCTGTATTGTGTAAGCAGTGCAGAAGGCTAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACCCTCAGTCCTGTATTGTGTAAGCAGTGCAGAAGGCTAGAGAA  200

seq1  TAAGGGGGGAAATTTGATGCTTCTTTCAGTAGTAAGCATGGATGATGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGGGAAATTTGATGCTTCTTTCAGTAGTAAGCATGGATGATGGAG  250

seq1  TTCCAGAATGGAAACCCATCTCCTTTAAACTTTTAAAGGAATTAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAATGGAAACCCATCTCCTTTAAACTTTTAAAGGAATTAAACAAA  300

seq1  AGCACTTCTAAGTATGGCTCCACATTGGGTGCTATGGAATGCTGGGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTCTAAGTATGGCTCCACATTGGGTGCTATGGAATGCTGGGGTCC  350

seq1  AGCCTTGACACAGGATCTGGGAAATTTGGAAGGTGCATAATAAACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGACACAGGATCTGGGAAATTTGGAAGGTGCATAATAAACACACA  400

seq1  GAGACAACTTTTTTGAGTATAAGCTGACAGTCAAATTTCGAGGGTTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAACTTTTTTGAGTATAAGCTGACAGTCAAATTTCGAGGGTTGAGG  450

seq1  TTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCCCTCTGTCTGTTACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCCCTCTGTCTGTTACAGT  500

seq1  CTGTCAGTCTCTCTGTCTCACTTGCTCGCTTATAGCTTGAGGCTGCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTCTCTCTGTCTCACTTGCTCGCTTATAGCTTGAGGCTGCATGC  550

seq1  TTTCTAAACTCTTCTGCACACTCTGCTTTTCTCCAGTGTGCTTTTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAACTCTTCTGCACACTCTGCTTTTCTCCAGTGTGCTTTTCTTTT  600

seq1  CCTGAACTCCCACACTCATACACACCTCTGTGCACTTTCCTTTCATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTCCCACACTCATACACACCTCTGTGCACTTTCCTTTCATTCAT  650

seq1  TCACACAATCTTCACACACACCTCATATGCTCTCCTTTCAATCTCTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAATCTTCACACACACCTCATATGCTCTCCTTTCAATCTCTCACA  700

seq1  CACACTCCTCTTACACACTCTCTCATGCACACCTCACTCTCCCTTCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCTCTTACACACTCTCTCATGCACACCTCACTCTCCCTTCACAC  750

seq1  TCTCTCTACTCTCTTTCACTCACTCCACACTCCCCTCTCTGCTCACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTACTCTCTTTCACTCACTCCACACTCCCCTCTCTGCTCACACAT  800

seq1  TTCTCTCACCTTTAACTTGCCCCATACTTTTATTCCAAAAGCAGGTAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCACCTTTAACTTGCCCCATACTTTTATTCCAAAAGCAGGTAGAG  850

seq1  GAAAAGATATTGTATAATCATTGCCAAATCAAATTCAGAAAAATGACCAC  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAAAGATATTGTATAATCATTGTCAAATCAAATTCAGAAAAATGACCAC  900

seq1  ATCC-CACAAAGAATCAAGAATTACAATTGTTCTCCAAAGTTTCAAGCTT  949
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCCTCACAAAGAATCAAGAATTACAATTGTTCTTCAAAGTTTCAAGCTT  950

seq1  CCCCTATTCCCA-GGCCTGTGGCCAAAATGGTAATAATTGCAAACTTTAA  998
      | |||||||||| ||||||||| | |||||||||| ||||||||||||||
seq2  CTCCTATTCCCAGGGCCTGTGGTC-AAATGGTAAT-ATTGCAAACTTTAA  998

seq1  TTTTTGACTTATTGTACTGCAAAGCTCAGAGCTCTGAGGTTAGCTACTTG  1048
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  TTTTTGACTTA-TGTACTGC-AAGCTCAGAGCTCTGAGGTTAGCTACTTG  1046

seq1  CATTTTCCTGTTAAGTTCTAATGATAAATGACATGGGCAAAGCTGCCAGG  1098
      |||||| ||||  || ||| ||||||||||| || ||| ||||||| | |
seq2  CATTTT-CTGT--AG-TCT-ATGATAAATGA-ATTGGC-AAGCTGCTA-G  1088

seq1  CAGTGGCCAGAAAGAGTCAAGTTAACCCTTAACTCAGCAGTTCTGCTAG-  1147
      || ||||||| ||||||||   |||||||| ||||||||| |||||||| 
seq2  CA-TGGCCAG-AAGAGTCA--GTAACCCTT-ACTCAGCAG-TCTGCTAGC  1132

seq1  CTTTCTGCTTCTGCACATTGCACACAACGACTCTCCTAAGAGTCCCAGTG  1197
      |||||||||||||  |||  ||||| ||    || || ||||| |||| |
seq2  CTTTCTGCTTCTG-TCATGCCACACGAC----CTTCT-AGAGT-CCAG-G  1174

seq1  TTTTGACTTA  1207
      ||||||||||
seq2  TTTTGACTTA  1184