BAC Information

Click to search

BAC

Clone NameB6Ng01-158O07
Chromosome13 (Build37)
Map Location 71,541,489 - 71,713,655
singlet/doubletdoublet
Overlap geneLOC627230, LOC100042360
Upstream geneEG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158O07.bB6Ng01-158O07.g
ACCDH952717DH952718
length1,0691,136
definitionDH952717|Mus musculus domesticus DNA, BAC clone: B6Ng01-158O07, 5' end.DH952718|Mus musculus domesticus DNA, BAC clone: B6Ng01-158O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,712,583 - 71,713,655)(71,541,489 - 71,542,658)
sequence
gaattccattaggtaagaagttgatttaggactttggaaaggtactgggg
agtctcagggccacaatataaagatgagggtgaacaacagagatgtcagt
gcagaacgatacactgtaaccaagtgcaagagaggtcaatggccgtcttg
gacagaactttccattcacagggaaagccagatgcaggaagacagaaggg
acaaaaggagatttgttcttctgtgttatggttgagaaaccaaagctctc
ttggcatatctagcttgggatgcagggccctgtatttgctggttgaactt
ccttgcctaccaatgaaaagtcatcccattttatctctctggcatggttc
agtagtagaattgatggtgccatgtttgccatgtcttcctggtacaagac
aggactttcaggggatgggaagattttgaagtgaatctctggattactga
cgagaaagactgactaagaaatccatacatgctgcattcattgtgtattg
gcaagcaggtaggtcatcacattagggatgtttcttatattgcatgaaat
acatgcgaaactctgtgaaccatggctttatcataaatgttcttaaaagc
gttaccctaataagtgatttttgcacgagtattttataatttctagcctt
cagttacagtgtgaatgaatgcaaaatatactgtgtgatcttcaccacaa
acactctaggaagtcacttacattttggaaggactacagcctggtggcat
caccacaatcctggaccaggaatgtcctggcagtgatgggttatcttggt
gacatctagcctgcagtttgatgagaggggcagattgtttctctgttacc
atggtgcacagtacaacacgttctgtttctaactccatggtctccctgtt
actctggaacaattttccccaggagggtggtgggtggaatgacttcttgg
gtagaatctggagaattttagggaattgggtactcagctaatagtgacga
ctcctgtactgagactccgttcaccagtcagattttattcccagtgtatc
gtaccatgccagcatttga
gaattcacatggagagaggaaaacaggaagtacttgaggataccacctgg
ccagggaggtggctcagtggataaaggcacttgtggctaaggtttatgat
ctgggttcaatccccagacaggagagaattgattcctgcaggtcgtcttc
tctctccatatctgtgccatggaatgcatatgtacacactcaaataagta
taaaaatactgatttatgatttttccaaagtcaatgattgtgccaggacc
ccactagcctaggatcgagttacttttggctaccatagaaggctggagaa
ggacgaagaagaatagttttgattcacatgaactatatgcctgtcagtta
tatcagtttccttgtgtgatcactaggtatactcagccatgaccatctaa
agccatgtctttgatgaagacagagattaaaaggcaaggcaagactttta
gcaactctatttaaaagggtttaaaattcacagcatgccctctgtgcttt
tgtgtacagaaaaaaaacaaaacaaaacaaaacaaaaaaacaagatacaa
atcagatcatcagatccacagaaatttagggtgttgtctggcaaactttt
gagtgcagagggaagagaggagctcaggctgggagtaatctagggaccaa
gcgaacaacagaatctgttggcaatgtctgctgttgtattaggatataat
ggtccaagggagtgtgggttttgatgctattagacattaagatttgattc
tagcacatagactatctggttcgaaatttccccaaactagaccaacacca
gcttgtccccagaagactggcatgggtgctcatagcttccacaggcaaga
gctgagcttagttctggcaactgagcacagcatgacagtcacagaggccc
tatctcagaaagaatatctgagagcgctgggcttctatgagcagttatgt
aagtcaaatgcttccatggcaatctctgcttgtcatcactgtaaatgggg
acacatcttcatgagagtcatgcaagaataaaatcaacatggtgtcactg
gagaaccagtatcaagactggtatataattccccgaggcttgagtaggat
cacttaaagaacccagctcatctggtcttacttgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71712583_71713655
seq2: B6Ng01-158O07.b_48_1116 (reverse)

seq1  TCAAATGCTGGGATGGTTCTGATACACTGGGATGAAAGTCTGACTGGTTG  50
      ||||||||||| ||||| | ||||||||||||  ||| ||||||||| ||
seq2  TCAAATGCTGGCATGGTAC-GATACACTGGGAATAAAATCTGACTGG-TG  48

seq1  AAC-GAGTCTTCACGTCAGGGAGTCGTCACTA-TAGCTGAGTACCCAAAT  98
      ||| ||||| ||| ||   ||||||||||||| ||||||||||||||| |
seq2  AACGGAGTC-TCA-GTACAGGAGTCGTCACTATTAGCTGAGTACCCAATT  96

seq1  CCCTAAAATTCTCCAGGATTCTACCCAAGAAGTCATTCCACCCACCACCC  148
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  CCCTAAAATTCTCCA-GATTCTACCCAAGAAGTCATTCCACCCACCA-CC  144

seq1  CTCCTGGGGAAAATTGTTCCAGAGTAACAGGGAGACCATGGAGTTAGAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGGAAAATTGTTCCAGAGTAACAGGGAGACCATGGAGTTAGAAA  194

seq1  CAGAACCTGTTGTACTGTGCACCATGGTAACAGAGAAACAATCTGCCCCT  248
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGTGTTGTACTGTGCACCATGGTAACAGAGAAACAATCTGCCCCT  244

seq1  CTCATCAAACTGCAGGCTAGATGTCACCAAGATAACCCATCACTGCCAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAAACTGCAGGCTAGATGTCACCAAGATAACCCATCACTGCCAGG  294

seq1  ACATTCCTGGTCCAGGATTGTGGTGATGCCACCAGGCTGTAGTCCTTCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTGGTCCAGGATTGTGGTGATGCCACCAGGCTGTAGTCCTTCCA  344

seq1  AAATGTAAGTGACTTCCTAGAGTGTTTGTGGTGAAGATCACACAGTATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAGTGACTTCCTAGAGTGTTTGTGGTGAAGATCACACAGTATAT  394

seq1  TTTGCATTCATTCACACTGTAACTGAAGGCTAGAAATTATAAAATACTCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTCATTCACACTGTAACTGAAGGCTAGAAATTATAAAATACTCG  444

seq1  TGCAAAAATCACTTATTAGGGTAACGCTTTTAAGAACATTTATGATAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAATCACTTATTAGGGTAACGCTTTTAAGAACATTTATGATAAAG  494

seq1  CCATGGTTCACAGAGTTTCGCATGTATTTCATGCAATATAAGAAACATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTCACAGAGTTTCGCATGTATTTCATGCAATATAAGAAACATCC  544

seq1  CTAATGTGATGACCTACCTGCTTGCCAATACACAATGAATGCAGCATGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTGATGACCTACCTGCTTGCCAATACACAATGAATGCAGCATGTA  594

seq1  TGGATTTCTTAGTCAGTCTTTCTCGTCAGTAATCCAGAGATTCACTTCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTTAGTCAGTCTTTCTCGTCAGTAATCCAGAGATTCACTTCAA  644

seq1  AATCTTCCCATCCCCTGAAAGTCCTGTCTTGTACCAGGAAGACATGGCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCCATCCCCTGAAAGTCCTGTCTTGTACCAGGAAGACATGGCAA  694

seq1  ACATGGCACCATCAATTCTACTACTGAACCATGCCAGAGAGATAAAATGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCACCATCAATTCTACTACTGAACCATGCCAGAGAGATAAAATGG  744

seq1  GATGACTTTTCATTGGTAGGCAAGGAAGTTCAACCAGCAAATACAGGGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTTTTCATTGGTAGGCAAGGAAGTTCAACCAGCAAATACAGGGCC  794

seq1  CTGCATCCCAAGCTAGATATGCCAAGAGAGCTTTGGTTTCTCAACCATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCCAAGCTAGATATGCCAAGAGAGCTTTGGTTTCTCAACCATAA  844

seq1  CACAGAAGAACAAATCTCCTTTTGTCCCTTCTGTCTTCCTGCATCTGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGAACAAATCTCCTTTTGTCCCTTCTGTCTTCCTGCATCTGGCT  894

seq1  TTCCCTGTGAATGGAAAGTTCTGTCCAAGACGGCCATTGACCTCTCTTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTGAATGGAAAGTTCTGTCCAAGACGGCCATTGACCTCTCTTGC  944

seq1  ACTTGGTTACAGTGTATCGTTCTGCACTGACATCTCTGTTGTTCACCCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTACAGTGTATCGTTCTGCACTGACATCTCTGTTGTTCACCCTC  994

seq1  ATCTTTATATTGTGGCCCTGAGACTCCCCAGTACCTTTCCAAAGTCCTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATATTGTGGCCCTGAGACTCCCCAGTACCTTTCCAAAGTCCTAA  1044

seq1  ATCAACTTCTTACCTAATGGAATTC  1073
      |||||||||||||||||||||||||
seq2  ATCAACTTCTTACCTAATGGAATTC  1069

seq1: chr13_71541489_71542658
seq2: B6Ng01-158O07.g_68_1203

seq1  GAATTCACATGGAGAGAGGAAAACAGGAAGTACTTGAGGATACCACCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGAGAGAGGAAAACAGGAAGTACTTGAGGATACCACCTGG  50

seq1  CCAGGGAGGTGGCTCAGTGGATAAAGGCACTTGTGGCTAAGGTTTATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGGTGGCTCAGTGGATAAAGGCACTTGTGGCTAAGGTTTATGAT  100

seq1  CTGGGTTCAATCCCCAGACAGGAGAGAATTGATTCCTGCAGGTCGTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCAATCCCCAGACAGGAGAGAATTGATTCCTGCAGGTCGTCTTC  150

seq1  TCTCTCCATATCTGTGCCATGGAATGCATATGTACACACTCAAATAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCATATCTGTGCCATGGAATGCATATGTACACACTCAAATAAGTA  200

seq1  TAAAAATACTGATTTATGATTTTTCCAAAGTCAATGATTGTGCCAGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACTGATTTATGATTTTTCCAAAGTCAATGATTGTGCCAGGACC  250

seq1  CCACTAGCCTAGGATCGAGTTACTTTTGGCTACCATAGAAGGCTGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGCCTAGGATCGAGTTACTTTTGGCTACCATAGAAGGCTGGAGAA  300

seq1  GGACGAAGAAGAATAGTTTTGATTCACATGAACTATATGCCTGTCAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAAGAAGAATAGTTTTGATTCACATGAACTATATGCCTGTCAGTTA  350

seq1  TATCAGTTTCCTTGTGTGATCACTAGGTATACTCAGCCATGACCATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTTCCTTGTGTGATCACTAGGTATACTCAGCCATGACCATCTAA  400

seq1  AGCCATGTCTTTGATGAAGACAGAGATTAAAAGGCAAGGCAAGACTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTCTTTGATGAAGACAGAGATTAAAAGGCAAGGCAAGACTTTTA  450

seq1  GCAACTCTATTTAAAAGGGTTTAAAATTCACAGCATGCCCTCTGTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTATTTAAAAGGGTTTAAAATTCACAGCATGCCCTCTGTGCTTT  500

seq1  TGTGTACAGAAAAAAAACAAAACAAAACAAAACAAAAAAACAAGATACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAGAAAAAAAACAAAACAAAACAAAACAAAAAAACAAGATACAA  550

seq1  ATCAGATCATCAGATCCACAGAAATTTAGGGTGTTGTCTGGCAAACTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCATCAGATCCACAGAAATTTAGGGTGTTGTCTGGCAAACTTTT  600

seq1  GAGTGCAGAGGGAAGAGAGGAGCTCAGGCTGGGAGTAATCTAGGGACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGAGGGAAGAGAGGAGCTCAGGCTGGGAGTAATCTAGGGACCAA  650

seq1  GCGAACAACAGAATCTGTTGGCAATGTCTGCTGTTGTATTAGGATATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACAACAGAATCTGTTGGCAATGTCTGCTGTTGTATTAGGATATAAT  700

seq1  GGTCCAAGGGAGTGTGGGTTTTGATGCTATTAGACATTAAGATTTGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGGGAGTGTGGGTTTTGATGCTATTAGACATTAAGATTTGATTC  750

seq1  TAGCACATAGACTATCTGGTTCGAAATTTCCCCAAACTAGACCAACACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATAGACTATCTGGTTCGAAATTTCCCCAAACTAGACCAACACCA  800

seq1  GCTTGTCCCCAGAAGACTGGCATGGGTGCTCATAGCTTCCACAGGCAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCCCCAGAAGACTGGCATGGGTGCTCATAGCTTCCACAGGCAAGA  850

seq1  GCTGAGCTTAGTTCTGGCAACTGAGGCACAGCATGACAGTCACAGAGGCC  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTGAGCTTAGTTCTGGCAACTGA-GCACAGCATGACAGTCACAGAGGCC  899

seq1  CTATCTCAGAAAAGAATATCTGAGAGCGCTGGGCTTCTAATGAGGCAGTT  950
      ||||||||| |||||||||||||||||||||||||||| |||| ||||||
seq2  CTATCTCAG-AAAGAATATCTGAGAGCGCTGGGCTTCT-ATGA-GCAGTT  946

seq1  ATGGTAAGTCAAATGCTTCCATGGCAATCTCTGCTTTGTCAATCACTGGT  1000
      || ||||||||||||||||||||||||||||||| ||||| |||||| ||
seq2  AT-GTAAGTCAAATGCTTCCATGGCAATCTCTGC-TTGTC-ATCACT-GT  992

seq1  AAATGGGGACACATCTTCATGGAGGAGTCATTGCACAGAATAAAAATCAA  1050
      |||||||||||||||||||||   |||||| |||| ||||| ||||||||
seq2  AAATGGGGACACATCTTCATG--AGAGTCA-TGCA-AGAAT-AAAATCAA  1037

seq1  CATGGTGTCACCCGGGGAGAACCCAAGTAACAAGACTTGGGTATATAAAA  1100
      |||||||||||    ||||||||  |||| |||||||  |||||||  ||
seq2  CATGGTGTCAC---TGGAGAACC--AGTATCAAGACT--GGTATAT--AA  1078

seq1  TCCCCAGAGGCTTCTGAGGAAAGGAGTCCACCTAAAAAGAACCACCAAGC  1150
      | ||| ||||||  ||||   ||||   ||| |||| |     ||| |||
seq2  TTCCCCGAGGCT--TGAG--TAGGA--TCACTTAAAGA-----ACCCAGC  1117

seq1  TCATCTGTGTCTAACTTGCC  1170
      ||||||| |||| |||||||
seq2  TCATCTG-GTCTTACTTGCC  1136