BAC Information

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BAC

Clone NameB6Ng01-159C03
Chromosome13 (Build37)
Map Location 55,350,216 - 55,487,894
singlet/doubletdoublet
Overlap geneNsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14
Upstream geneLOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4
Downstream geneSlc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159C03.bB6Ng01-159C03.g
ACCDH952889DH952890
length1,1181,021
definitionDH952889|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C03, 5' end.DH952890|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,486,756 - 55,487,894)(55,350,216 - 55,351,249)
sequence
gaattctttcctgactgtgtggctctaggggagaagctagaagacaaagc
taataggatgagagggttgagtctccaactacagagccatggagaagcca
tctgtggtggtttgaatatgcttggcccagggagtggcactattaggagg
tgtggccttgatggaggaagtgtgtcactgtgggcatggcctgcctggaa
gccagtcttctctggtctgcctttggatgaagattagaattctcggctcc
tccagccccatgtctgcctggatgctgccatgcatatatagatgcatcta
tagatgataatggactgaacttctgaacctgtaagccagccccagttaaa
tgttgtccttataagacttgctgtggtcatggtgtctgatcaaaacaata
aaaccctaaccaagataccatcgttccttcagggtgctaacttccctgtg
tggatgattaaatgacccacgtttctggaggaattttggggaattgttct
ttgttcttgttgggactttaggaggatggtggatgctgtttacatctttc
ccagggaagctattttagcaacagcaatttctctccctcctccactccta
acaccacacacataccctagcactacacagtccctcaatgcctcttgctc
ccccattcttccttgagcctattcctgcctgccaagctggtcagggaagc
agggttcttgtagttgtgggtcttagaaacccacctcgctgtaacaagct
cacactcccaggaagaacttactggcttgcctaagtaaaagtcaggaagt
ggccattacaggcatgggtgaagtgacaggatggccaccacctcaatcct
gctttcctgagttgccttctgtgcaaaggcctttgtgcagatgctcagaa
gtggtagagataggccaatagaattgggataagataaaatgattcacttc
tttttattttatgtttctggtgtttgctgcatgtatgtctgggcactatg
ttttgttttatgagtatttatgagcagaagagatgttggttgtagctgca
gtgcgtgctgagatcaacttcaagctccctctgtgagagggtcaggtctt
aacactgagcacctctca
gaattcttttgatgtggatatacagctctcccaaaatagtttgttgaaga
aactatactttttccattgctgtcatcctgcttcagctttctgagtgctg
ggattctagctgcaagatgtaacatgcccagcttccgaagtctgaggaag
ttgagctgcgtggtcagtgcatcagcaaactgtaggcttcatggactttg
tgctttcccatttgatctttagtgttttcagttacgtgtgtttcagtgta
tgcatgaactacagttagaggtcagtgtgagccacctgatgtgggtgctg
ggaatcaaacttgggtcctctggaagagctctttctttcttttttattta
ttttttattttttttagtcttattattatacataagtacattgtagctga
cttcagacgcaccagaagagggcatcagatctcattatgggtggttgtga
gccaccatgtggttgctgggaattgaactcaggaccttcggagaagcagt
cagtgctctcttaccctctgagccatcttgccagccccggaagagcgctt
tcttaactgctgagtcatcttccctttgttttttggtttctctgtagcct
tgactgttggaggagaactagctctgcagacctggctgtctcagcctctg
agtactggcacaagctcaactttgtttggatttttaaaaaaaaagattca
tatcattcattcagtcttggattgactatttcaaggaatttattcagttc
ttctggattgtccagttatgtatgatatcagtgttggtgatatcagttgt
agtgtctctttatgatttatgccctttttttcttttttctttttgggttt
tcaagacagggtttctctgtatagcctggctgtcctggaactcactttgt
agaccaggctggcctcaaactcagaaatccacctgctctggcctccagtg
ctgggattagaaggcgtgcacaccatgccgcctctttttttttttttttt
taattgtgctaagtttgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55486756_55487894
seq2: B6Ng01-159C03.b_50_1167 (reverse)

seq1  TGAGAGGTGGCTCAGTGGTTAAGAGCACTGACCCCTCTCACAGA-GGAGC  49
      |||||||| ||||||| |||||||   |||| |||||||||||| |||||
seq2  TGAGAGGT-GCTCAGT-GTTAAGA--CCTGA-CCCTCTCACAGAGGGAGC  45

seq1  CTGAGGTTGATTCTCAGCACCCACTTGGCAGCTAACAACCAACATCCTCT  99
       ||| ||||| ||||||||| ||||  |||||| ||||||||||| ||||
seq2  TTGAAGTTGA-TCTCAGCACGCACT--GCAGCT-ACAACCAACAT-CTCT  90

seq1  TCTGGCCTTCATAAATACTTCATAAATACATACATAGTGCCCAGACATAC  149
      ||||    |||||||||| |||||||   | |||||||||||||||||||
seq2  TCTG---CTCATAAATAC-TCATAAAACAAAACATAGTGCCCAGACATAC  136

seq1  ATGCAGGCAAAACACCCAGACACATAAAATAAAAAAGAGGTGAATCATTT  199
      ||||||   ||||| ||||| ||||||||| ||||||| |||||||||||
seq2  ATGCAG--CAAACA-CCAGAAACATAAAAT-AAAAAGAAGTGAATCATTT  182

seq1  TATCTTAATCCCAATTCTATTGGCTTATCTTCTACCACCTTCTGAGCATC  249
      |||||| ||||||||||||||||| |||| ||||||| ||||||||||||
seq2  TATCTT-ATCCCAATTCTATTGGCCTATC-TCTACCA-CTTCTGAGCATC  229

seq1  TGCACAAAGGCCTTTGCACAGAAGGCAACTCAGGAAAGCAGGATTGAGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAAGGCCTTTGCACAGAAGGCAACTCAGGAAAGCAGGATTGAGGT  279

seq1  GGTGGCCATCCTGTCACTTCACCCATGCCTGTAATGGCCACTTCCTGACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCATCCTGTCACTTCACCCATGCCTGTAATGGCCACTTCCTGACT  329

seq1  TTTACCTTAGGCAAGCCAGTAAGTTCTTCCTGGGAGTGTGAGCTTGTTAC  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTA-CTTAGGCAAGCCAGTAAGTTCTTCCTGGGAGTGTGAGCTTGTTAC  378

seq1  AGCGAGGTGGGTTTCTAAGACCCACAACTACAAGAACCCTGCTTCCCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGTGGGTTTCTAAGACCCACAACTACAAGAACCCTGCTTCCCTGA  428

seq1  CCAGCTTGGCAGGCAGGAATAGGCTCAAGGAAGAATGGGGGAGCAAGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGGCAGGCAGGAATAGGCTCAAGGAAGAATGGGGGAGCAAGAGG  478

seq1  CATTGAGGGACTGTGTAGTGCTAGGGTATGTGTGTGGTGTTAGGAGTGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGGGACTGTGTAGTGCTAGGGTATGTGTGTGGTGTTAGGAGTGGA  528

seq1  GGAGGGAGAGAAATTGCTGTTGCTAAAATAGCTTCCCTGGGAAAGATGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGAGAAATTGCTGTTGCTAAAATAGCTTCCCTGGGAAAGATGTA  578

seq1  AACAGCATCCACCATCCTCCTAAAGTCCCAACAAGAACAAAGAACAATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATCCACCATCCTCCTAAAGTCCCAACAAGAACAAAGAACAATTC  628

seq1  CCCAAAATTCCTCCAGAAACGTGGGTCATTTAATCATCCACACAGGGAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATTCCTCCAGAAACGTGGGTCATTTAATCATCCACACAGGGAAG  678

seq1  TTAGCACCCTGAAGGAACGATGGTATCTTGGTTAGGGTTTTATTGTTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACCCTGAAGGAACGATGGTATCTTGGTTAGGGTTTTATTGTTTTG  728

seq1  ATCAGACACCATGACCACAGCAAGTCTTATAAGGACAACATTTAACTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACACCATGACCACAGCAAGTCTTATAAGGACAACATTTAACTGGG  778

seq1  GCTGGCTTACAGGTTCAGAAGTTCAGTCCATTATCATCTATAGATGCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTACAGGTTCAGAAGTTCAGTCCATTATCATCTATAGATGCATC  828

seq1  TATATATGCATGGCAGCATCCAGGCAGACATGGGGCTGGAGGAGCCGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGCATGGCAGCATCCAGGCAGACATGGGGCTGGAGGAGCCGAGA  878

seq1  ATTCTAATCTTCATCCAAAGGCAGACCAGAGAAGACTGGCTTCCAGGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATCTTCATCCAAAGGCAGACCAGAGAAGACTGGCTTCCAGGCAG  928

seq1  GCCATGCCCACAGTGACACACTTCCTCCATCAAGGCCACACCTCCTAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCCCACAGTGACACACTTCCTCCATCAAGGCCACACCTCCTAATA  978

seq1  GTGCCACTCCCTGGGCCAAGCATATTCAAACCACCACAGATGGCTTCTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTCCCTGGGCCAAGCATATTCAAACCACCACAGATGGCTTCTCC  1028

seq1  ATGGCTCTGTAGTTGGAGACTCAACCCTCTCATCCTATTAGCTTTGTCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTGTAGTTGGAGACTCAACCCTCTCATCCTATTAGCTTTGTCTT  1078

seq1  CTAGCTTCTCCCCTAGAGCCACACAGTCAGGAAAGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCTCCCCTAGAGCCACACAGTCAGGAAAGAATTC  1118

seq1: chr13_55350216_55351249
seq2: B6Ng01-159C03.g_68_1088

seq1  GAATTCTTTTGATGTGGATATACAGCTCTCCCAAAATAGTTTGTTGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGATGTGGATATACAGCTCTCCCAAAATAGTTTGTTGAAGA  50

seq1  AACTATACTTTTTCCATTGCTGTCATCCTGCTTCAGCTTTCTGAGTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATACTTTTTCCATTGCTGTCATCCTGCTTCAGCTTTCTGAGTGCTG  100

seq1  GGATTCTAGCTGCAAGATGTAACATGCCCAGCTTCCGAAGTCTGAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTAGCTGCAAGATGTAACATGCCCAGCTTCCGAAGTCTGAGGAAG  150

seq1  TTGAGCTGCGTGGTCAGTGCATCAGCAAACTGTAGGCTTCATGGACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGCGTGGTCAGTGCATCAGCAAACTGTAGGCTTCATGGACTTTG  200

seq1  TGCTTTCCCATTTGATCTTTAGTGTTTTCAGTTACGTGTGTTTCAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCCATTTGATCTTTAGTGTTTTCAGTTACGTGTGTTTCAGTGTA  250

seq1  TGCATGAACTACAGTTAGAGGTCAGTGTGAGCCACCTGATGTGGGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAACTACAGTTAGAGGTCAGTGTGAGCCACCTGATGTGGGTGCTG  300

seq1  GGAATCAAACTTGGGTCCTCTGGAAGAGCTCTTTCTTTCTTTTTTATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAAACTTGGGTCCTCTGGAAGAGCTCTTTCTTTCTTTTTTATTTA  350

seq1  TTTTTTATTTTTTTTAGTCTTATTATTATACATAAGTACATTGTAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTTTTTAGTCTTATTATTATACATAAGTACATTGTAGCTGA  400

seq1  CTTCAGACGCACCAGAAGAGGGCATCAGATCTCATTATGGGTGGTTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACGCACCAGAAGAGGGCATCAGATCTCATTATGGGTGGTTGTGA  450

seq1  GCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTCGGAGAAGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTCGGAGAAGCAGT  500

seq1  CAGTGCTCTCTTACCCTCTGAGCCATCTTGCCAGCCCCGGAAGAGCGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCTCTTACCCTCTGAGCCATCTTGCCAGCCCCGGAAGAGCGCTT  550

seq1  TCTTAACTGCTGAGTCATCTTCCCTTTGTTTTTTGGTTTCTCTGTAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTGCTGAGTCATCTTCCCTTTGTTTTTTGGTTTCTCTGTAGCCT  600

seq1  TGACTGTTGGAGGAGAACTAGCTCTGCAGACCTGGCTGTCTCAGCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTGGAGGAGAACTAGCTCTGCAGACCTGGCTGTCTCAGCCTCTG  650

seq1  AGTACTGGCACAAGCTCAACTTTGTTTGGATTTTTAAAAAAAAAGATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGGCACAAGCTCAACTTTGTTTGGATTTTTAAAAAAAAAGATTCA  700

seq1  TATCATTCATTCAGTCTTGGATTGACTATTTCAAGGAATTTATTCAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCATTCAGTCTTGGATTGACTATTTCAAGGAATTTATTCAGTTC  750

seq1  TTCTGGATTGTCCAGTTATGTATGATATCAGTGTTGGTGATATCAGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATTGTCCAGTTATGTATGATATCAGTGTTGGTGATATCAGTTGT  800

seq1  AGTGTCTCTTTATGATTTATGCCCTTTTTTTCTTTTTTTCTTTTTTGGGT  850
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  AGTGTCTCTTTATGATTTATGCCCTTTTTTTCTTTTTT--CTTTTTGGGT  848

seq1  TTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCAAGACAGGGTTTCTCTGTATAG-CCTGGCTGTCCTGGAACTCACTT  897

seq1  TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCT-GCCTCC  949
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTG-CTCTGGCCTCC  946

seq1  CAAGTGCTGGGATTAG-AGGCGTGCACCACCATGCCCGGCCTCCTTTTTT  998
        |||||||||||||| ||||||||| |||||||||  |||||   ||||
seq2  --AGTGCTGGGATTAGAAGGCGTGCA-CACCATGCC--GCCTC---TTTT  988

seq1  TTTTTTTTTTTTTAAATGTTGCTAAGAGTTTGTTAT  1034
      ||||||||||||||| || |||||  ||||||||||
seq2  TTTTTTTTTTTTTAATTG-TGCTA--AGTTTGTTAT  1021