BAC Information

Click to search

BAC

Clone NameB6Ng01-159H04
Chromosome13 (Build37)
Map Location 118,500,759 - 118,586,067
singlet/doubletdoublet
Overlap geneHcn1
Upstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneLOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159H04.bB6Ng01-159H04.g
ACCDH953110DH953111
length3781,130
definitionDH953110|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H04, 5' end.DH953111|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,585,690 - 118,586,067)(118,500,759 - 118,501,927)
sequence
catccagctatcacttcttatttattgccaagacaggacttaaatggata
ttcctcagaggagactttcttgacatgcagaaagagaattaagggcctcc
tcccagagcagtataaccgaacagagtaacaatgtttaatacattcttta
tttgtttatgtaaatgtgttttaaccagatgataaatcctagagttcaat
aactgtatgcacaaagtatgcctagcatgttcataaaataggaagtgaag
gggagaaaaaaagaagagaaggaaaaaggaaaagaggaaggaggaaagca
gaaaaagaaagagagggacctggaagaaaaggggaactagggatgaaggg
aaggaggaaggaaagaaggagagaggga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaaa
ataaaaaaaaaagaaatgtaaataaagaaatatccaataaacacacacac
acacacaagtttaaattaaaatctccctattagcagtcaacactgatgtt
agcttacctgagagaacagattaatcacatatttcaaataacattttcta
aaaagatttgcttttgttaaggaatgaaagattaaagcatccatcagttg
agagttactcatctaaataaccaccacaacaaatctgtacttcacccatg
gtttcttgcttcacattttgatgtgactaggttgtaaattataggtgctt
tgaaaactgagcccatgataacttgtgatactattttctgtgcaccataa
caaatgctgtgcttttcttcatcttgaaatattgaaattatagatatcta
ttagagaccagcattgatatcacctcctcttttaagccatctggagcatt
ttagcaagaatttttatctttctttacctctaccacttaatttacatcca
tatctctcttttcatcaattttttgattgcaaaaaccttgaaaaaaagaa
taaatattgttcatgttatgtagcttacttaatacacagacagttttagg
aagttcacaatatttattaaatatctctgtacaagttaaactgttagcta
gtagcttattgatataccagtcttgaaaagatgaatgcgaaagagtcatg
gagaaaatattctgagttgatagatgttttaccacaagactgtgtaagaa
aattattaataagcatcctttgggctaatatgaagggtaatgtcagtggt
ttaagaatctgattggctaactgatgaactgggagtgtttatacaaattg
gatgtactagccatgacccatattatatctcatttttacccttttttctt
ttttctggatatttctcttttacatttcaatgtatccgttctctgtttcc
ccctcctctgaaccccatccatcttctcccccacccccgctcttggagtt
ctcactcaccacccacttctacttcctcctcattccctacactgggatct
atgagcttcaaggatcaggacctctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118585690_118586067
seq2: B6Ng01-159H04.b_54_431 (reverse)

seq1  TCCCTCTCTCCTTCTTTCCTTCCTCCTTCCCTTCATCCCTAGTTCCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTCCTTCTTTCCTTCCTCCTTCCCTTCATCCCTAGTTCCCCTT  50

seq1  TTCTTCCAGGTCCCTCTCTTTCTTTTTCTGCTTTCCTCCTTCCTCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAGGTCCCTCTCTTTCTTTTTCTGCTTTCCTCCTTCCTCTTTTC  100

seq1  CTTTTTCCTTCTCTTCTTTTTTTCTCCCCTTCACTTCCTATTTTATGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTTCTCTTCTTTTTTTCTCCCCTTCACTTCCTATTTTATGAAC  150

seq1  ATGCTAGGCATACTTTGTGCATACAGTTATTGAACTCTAGGATTTATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGGCATACTTTGTGCATACAGTTATTGAACTCTAGGATTTATCAT  200

seq1  CTGGTTAAAACACATTTACATAAACAAATAAAGAATGTATTAAACATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAAAACACATTTACATAAACAAATAAAGAATGTATTAAACATTGT  250

seq1  TACTCTGTTCGGTTATACTGCTCTGGGAGGAGGCCCTTAATTCTCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTTCGGTTATACTGCTCTGGGAGGAGGCCCTTAATTCTCTTTCT  300

seq1  GCATGTCAAGAAAGTCTCCTCTGAGGAATATCCATTTAAGTCCTGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCAAGAAAGTCTCCTCTGAGGAATATCCATTTAAGTCCTGTCTTG  350

seq1  GCAATAAATAAGAAGTGATAGCTGGATG  378
      ||||||||||||||||||||||||||||
seq2  GCAATAAATAAGAAGTGATAGCTGGATG  378

seq1: chr13_118500759_118501927
seq2: B6Ng01-159H04.g_70_1199

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAAA  50

seq1  ATAAAAAAAAAAGAAATGTAAATAAAGAAATATCCAATAAACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAAAGAAATGTAAATAAAGAAATATCCAATAAACACACACAC  100

seq1  ACACACAAGTTTAAATTAAAATCTCCCTATTAGCAGTCAACACTGATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAGTTTAAATTAAAATCTCCCTATTAGCAGTCAACACTGATGTT  150

seq1  AGCTTACCTGAGAGAACAGATTAATCACATATTTCAAATAACATTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACCTGAGAGAACAGATTAATCACATATTTCAAATAACATTTTCTA  200

seq1  AAAAGATTTGCTTTTGTTAAGGAATGAAAGATTAAAGCATCCATCAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTTGCTTTTGTTAAGGAATGAAAGATTAAAGCATCCATCAGTTG  250

seq1  AGAGTTACTCATCTAAATAACCACCACAACAAATCTGTACTTCACCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTACTCATCTAAATAACCACCACAACAAATCTGTACTTCACCCATG  300

seq1  GTTTCTTGCTTCACATTTTGATGTGACTAGGTTGTAAATTATAGGTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGCTTCACATTTTGATGTGACTAGGTTGTAAATTATAGGTGCTT  350

seq1  TGAAAACTGAGCCCATGATAACTTGTGATACTATTTTCTGTGCACCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTGAGCCCATGATAACTTGTGATACTATTTTCTGTGCACCATAA  400

seq1  CAAATGCTGTGCTTTTCTTCATCTTGAAATATTGAAATTATAGATATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTGTGCTTTTCTTCATCTTGAAATATTGAAATTATAGATATCTA  450

seq1  TTAGAGACCAGCATTGATATCACCTCCTCTTTTAAGCCATCTGGAGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACCAGCATTGATATCACCTCCTCTTTTAAGCCATCTGGAGCATT  500

seq1  TTAGCAAGAATTTTTATCTTTCTTTACCTCTACCACTTAATTTACATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGAATTTTTATCTTTCTTTACCTCTACCACTTAATTTACATCCA  550

seq1  TATCTCTCTTTTCATCAATTTTTTGATTGCAAAAACCTTGAAAAAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCTTTTCATCAATTTTTTGATTGCAAAAACCTTGAAAAAAAGAA  600

seq1  TAAATATTGTTCATGTTATGTAGCTTACTTAATACACAGACAGTTTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTGTTCATGTTATGTAGCTTACTTAATACACAGACAGTTTTAGG  650

seq1  AAGTTCACAATATTTATTAAATATCTCTGTACAAGTTAAACTGTTAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACAATATTTATTAAATATCTCTGTACAAGTTAAACTGTTAGCTA  700

seq1  GTAGCTTATTGATATACCAGTCTTGAAAAGATGAATGCGAAAGAGTCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTATTGATATACCAGTCTTGAAAAGATGAATGCGAAAGAGTCATG  750

seq1  GAGAAAATATTCTGAGTTGATAGATGTTTTACCACAAGACTGTGTAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATATTCTGAGTTGATAGATGTTTTACCACAAGACTGTGTAAGAA  800

seq1  AATTATTAATAAGCATCCTTTGGGCTAATATGAAGGGTAATGTCAGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAATAAGCATCCTTTGGGCTAATATGAAGGGTAATGTCAGTGGT  850

seq1  TTAAGAATCTGATTGGCTAACTGATGAACTGGGAGGTGTTTATACAAATT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAAGAATCTGATTGGCTAACTGATGAACTGGGA-GTGTTTATACAAATT  899

seq1  GGATGTACTAGCCATGAACCCATATTTATAATTCTCATTTTTAACCCTTT  950
      |||||||||||||||| ||||||| |||||  |||||||||| |||||||
seq2  GGATGTACTAGCCATG-ACCCATA-TTATA--TCTCATTTTT-ACCCTTT  944

seq1  TTTCTTTTTTCTTGGATATTTTCTCTTTTTACATTTCAAATGTTATCCCC  1000
      ||||||||||| |||||| |||||| ||||||||||| |||| |||  ||
seq2  TTTCTTTTTTC-TGGATA-TTTCTC-TTTTACATTTC-AATG-TAT--CC  987

seq1  TTTCTCTGTTTTCCCCCTCTCCTGGAAACCCCCCATCCCATCCTCTCCCC  1050
       ||||||| ||||||||||  ||| |    |||||| ||||| ||| |||
seq2  GTTCTCTG-TTTCCCCCTCCTCTGAA----CCCCAT-CCATCTTCT-CCC  1030

seq1  CCACCCCCGCTTCTATGAGGGTTTTCTTCCACCCACCCACCCACTCCTAC  1100
      |||||||||| |||  |||    ||||  ||| || ||||||||| ||||
seq2  CCACCCCCGC-TCTTGGAG----TTCT--CACTCA-CCACCCACTTCTAC  1072

seq1  CTCCCTGCCCTCAATTCCCCTACACTGGGGCATCTATTGAGCCTTCACAG  1150
       |||    |||||  | ||||||||||||  ||||| |||| ||||| ||
seq2  TTCC---TCCTCA--TTCCCTACACTGGG--ATCTA-TGAG-CTTCA-AG  1112

seq1  GACCAAGGACCTCTCCTCC  1169
      || | ||||||||||||||
seq2  GATC-AGGACCTCTCCTCC  1130