BAC Information

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BAC

Clone NameB6Ng01-159P20
Chromosome13 (Build37)
Map Location 10,749,623 - 10,899,641
singlet/doubletdoublet
Overlap genenone
Upstream geneZmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648, Zp4, Ryr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159P20.bB6Ng01-159P20.g
ACCDH953492DH953493
length9171,058
definitionDH953492|Mus musculus domesticus DNA, BAC clone: B6Ng01-159P20, 5' end.DH953493|Mus musculus domesticus DNA, BAC clone: B6Ng01-159P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,898,740 - 10,899,641)(10,749,623 - 10,750,701)
sequence
gaattcaaacacatggcaagccactttgagttgtatgatccatttgcagg
tagttcattcttaaggagaaacgtatgagtatctgagaagtaaggtaaga
ttcccatcacaatgtggggagttctaatattgaatccacttccgagtcac
catcagaatgtcaaatatttgttacaaaagcatgtggatggaaggaattt
aaccctgagtaacattaatacagtgtaacgctatccttactggagaagat
gattttaaaattcccattgcaatgtaacactggttttaaaggaatatgac
aaatgcttaatgaactcttacacgtgccgtcttactttctggaaagatga
ggcaggaggatcacctagaactgaggccagctgggaacaccttaggctat
gtagtgagtttcaaagaccatctggggtgacacagaaaatggctccttta
aactttctgtgttctttcttcttctgggaactttttgatttttcatttcc
tgtttgtatgattttttttttaaatttggttagtctctttacgaattgat
ttttttagacattgatagacactgatgctaagaacatgcactgaatttcc
ttctattagactggctgctttctgtcagccctgaagttgtgatcctattt
gaagtctgaaatgttagccatgtctatgaaaactttgtgtatatgatttt
ctacttgaatcataaagatacttcttttcacagatacctaaattaatcaa
atctgttttacttcatatgttagtggttactttcccttggcattgaatga
cactgtaatttcttgtccttttcttttctttcctttcctttcctttcctt
tcctttctttcctttccattccattctttctttctttctttctttccttt
ctttctttctttctttc
gaattcaactcctagataattttgctaatattatgaggactaaaagttta
aacagaccatcgggtggccgagaaatctaaagacattattttacagtgag
ttttaacttaacactgattcagatactggaaaattacagccttctatcct
ccttcaaagcagtaatttgatgacagttacaatcatacaatctaattcta
ttctgttgtatactacacattgaggtttttatttttctgatttctaatca
ggaaaaaaaaaaaaacaaaaacgtccttttgggaaattgtggtggtagat
gttatagccaggccagaggtactaatttaattactcagtaaattattgaa
cacacatgattcttttggactctctgagagtaatactagatgaaaaatct
tctcctaactaatacattttaagtgaatgactttcagaaatcatttgaaa
acccattttcatagtagcatatgtcctcagatttctcttgattttatcta
tttataatgaaaatgagtttggtcaggtcttatctgtcctccctcccatt
acattccaaaatatgaagaaaggttcttcacactatcccactgacttgca
aaaacatctaaggctgaggagacagaacagtcagtaaaagtccttgccat
accagcatgaagacataaatttatctttagatcccacataaaaatgtgaa
gtgtggtggcatgatcttgtaattccagtgcccagaattcgaggtgaggg
gacccttggggttttctgatcattcattatggcctacttgacagatcttg
tattcaaataagaagctgaacagctcttgagagacaaatgtgaggctgct
ctttggcttccacatggaagtgcatgcatatatgcatgcatgcacgaact
cttatatatgacatgttcatatgtacacatataggggaaagagaaaagaa
ctacttacccaatgagatcttatgatgaaggacgcacatgtgacttgact
gtatgcttatgagagtaaatcctggatttggaatagggacattactgtac
ttattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10898740_10899641
seq2: B6Ng01-159P20.b_52_968 (reverse)

seq1  --------GAAAG---GAAAGGAAAG---GAAAGGA--AAGGAAAGGAAA  34
              |||||   ||||||||||   ||||| |  || ||| |||| 
seq2  GAAAGAAAGAAAGAAAGAAAGGAAAGAAAGAAAGAAAGAAAGAATGGAAT  50

seq1  GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGAAAAGAAAA  84
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAA-GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGAAAAGAAAA  99

seq1  GGACAAGAAATTACAGTGTCATTCAATGCCAAGGGAAAGTAACCACTAAC  134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGAAATTACAGTGTCATTCAATGCCAAGGGAAAGTAACCACTAAC  149

seq1  ATATGAAGTAAAACAGATTTGATTAATTTAGGTATCTGTGAAAAGAAGTA  184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGTAAAACAGATTTGATTAATTTAGGTATCTGTGAAAAGAAGTA  199

seq1  TCTTTATGATTCAAGTAGAAAATCATATACACAAAGTTTTCATAGACATG  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGATTCAAGTAGAAAATCATATACACAAAGTTTTCATAGACATG  249

seq1  GCTAACATTTCAGACTTCAAATAGGATCACAACTTCAGGGCTGACAGAAA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATTTCAGACTTCAAATAGGATCACAACTTCAGGGCTGACAGAAA  299

seq1  GCAGCCAGTCTAATAGAAGGAAATTCAGTGCATGTTCTTAGCATCAGTGT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGTCTAATAGAAGGAAATTCAGTGCATGTTCTTAGCATCAGTGT  349

seq1  CTATCAATGTCTAAAAAAATCAATTCGTAAAGAGACTAACCAAATTTAAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAATGTCTAAAAAAATCAATTCGTAAAGAGACTAACCAAATTTAAA  399

seq1  AAAAAAATCATACAAACAGGAAATGAAAAATCAAAAAGTTCCCAGAAGAA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCATACAAACAGGAAATGAAAAATCAAAAAGTTCCCAGAAGAA  449

seq1  GAAAGAACACAGAAAGTTTAAAGGAGCCATTTTCTGTGTCACCCCAGATG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACACAGAAAGTTTAAAGGAGCCATTTTCTGTGTCACCCCAGATG  499

seq1  GTCTTTGAAACTCACTACATAGCCTAAGGTGTTCCCAGCTGGCCTCAGTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAAACTCACTACATAGCCTAAGGTGTTCCCAGCTGGCCTCAGTT  549

seq1  CTAGGTGATCCTCCTGCCTCATCTTTCCAGAAAGTAAGACGGCACGTGTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGATCCTCCTGCCTCATCTTTCCAGAAAGTAAGACGGCACGTGTA  599

seq1  AGAGTTCATTAAGCATTTGTCATATTCCTTTAAAACCAGTGTTACATTGC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCATTAAGCATTTGTCATATTCCTTTAAAACCAGTGTTACATTGC  649

seq1  AATGGGAATTTTAAAATCATCTTCTCCAGTAAGGATAGCGTTACACTGTA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAATTTTAAAATCATCTTCTCCAGTAAGGATAGCGTTACACTGTA  699

seq1  TTAATGTTACTCAGGGTTAAATTCCTTCCATCCACATGCTTTTGTAACAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTACTCAGGGTTAAATTCCTTCCATCCACATGCTTTTGTAACAA  749

seq1  ATATTTGACATTCTGATGGTGACTCGGAAGTGGATTCAATATTAGAACTC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGACATTCTGATGGTGACTCGGAAGTGGATTCAATATTAGAACTC  799

seq1  CCCACATTGTGATGGGAATCTTACCTTACTTCTCAGATACTCATACGTTT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTGTGATGGGAATCTTACCTTACTTCTCAGATACTCATACGTTT  849

seq1  CTCCTTAAGAATGAACTACCTGCAAATGGATCATACAACTCAAAGTGGCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAGAATGAACTACCTGCAAATGGATCATACAACTCAAAGTGGCT  899

seq1  TGCCATGTGTTTGAATTC  902
      ||||||||||||||||||
seq2  TGCCATGTGTTTGAATTC  917

seq1: chr13_10749623_10750701
seq2: B6Ng01-159P20.g_67_1124

seq1  GAATTCAACTCCTAGATAATTTTGCTAATATTATGAGGACTAAAAGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCTAGATAATTTTGCTAATATTATGAGGACTAAAAGTTTA  50

seq1  AACAGACCATCGGGTGGCCGAGAAATCTAAAGACATTATTTTACAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCATCGGGTGGCCGAGAAATCTAAAGACATTATTTTACAGTGAG  100

seq1  TTTTAACTTAACACTGATTCAGATACTGGAAAATTACAGCCTTCTATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTTAACACTGATTCAGATACTGGAAAATTACAGCCTTCTATCCT  150

seq1  CCTTCAAAGCAGTAATTTGATGACAGTTACAATCATACAATCTAATTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAGCAGTAATTTGATGACAGTTACAATCATACAATCTAATTCTA  200

seq1  TTCTGTTGTATACTACACATTGAGGTTTTTATTTTTCTGATTTCTAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGTATACTACACATTGAGGTTTTTATTTTTCTGATTTCTAATCA  250

seq1  GGAAAAAAAAAAAAACAAAAACGTCCTTTTGGGAAATTGTGGTGGTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAAAAACAAAAACGTCCTTTTGGGAAATTGTGGTGGTAGAT  300

seq1  GTTATAGCCAGGCCAGAGGTACTAATTTAATTACTCAGTAAATTATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGCCAGGCCAGAGGTACTAATTTAATTACTCAGTAAATTATTGAA  350

seq1  CACACATGATTCTTTTGGACTCTCTGAGAGTAATACTAGATGAAAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGATTCTTTTGGACTCTCTGAGAGTAATACTAGATGAAAAATCT  400

seq1  TCTCCTAACTAATACATTTTAAGTGAATGACTTTCAGAAATCATTTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAACTAATACATTTTAAGTGAATGACTTTCAGAAATCATTTGAAA  450

seq1  ACCCATTTTCATAGTAGCATATGTCCTCAGATTTCTCTTGATTTTATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTTCATAGTAGCATATGTCCTCAGATTTCTCTTGATTTTATCTA  500

seq1  TTTATAATGAAAATGAGTTTGGTCAGGTCTTATCTGTCCTCCCTCCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATGAAAATGAGTTTGGTCAGGTCTTATCTGTCCTCCCTCCCATT  550

seq1  ACATTCCAAAATATGAAGAAAGGTTCTTCACACTATCCCACTGACTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCAAAATATGAAGAAAGGTTCTTCACACTATCCCACTGACTTGCA  600

seq1  AAAACATCTAAGGCTGAGGAGACAGAACAGTCAGTAAAAGTCCTTGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCTAAGGCTGAGGAGACAGAACAGTCAGTAAAAGTCCTTGCCAT  650

seq1  ACCAGCATGAAGACATAAATTTATCTTTAGATCCCACATAAAAATGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCATGAAGACATAAATTTATCTTTAGATCCCACATAAAAATGTGAA  700

seq1  GTGTGGTGGCATGATCTTGTAATTCCAGTGCCCAGAATTCGAGGTGAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTGGCATGATCTTGTAATTCCAGTGCCCAGAATTCGAGGTGAGGG  750

seq1  GACCCTTGGGGTTTTCTGATCATTCATTATGGCCTACTTGACAAGATCTT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GACCCTTGGGGTTTTCTGATCATTCATTATGGCCTACTTGAC-AGATCTT  799

seq1  GTATTCAAATAAGAAGCTGAACAGCTCTTGAGAGACAAAATGTGAGGCTG  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTATTCAAATAAGAAGCTGAACAGCTCTTGAGAGAC-AAATGTGAGGCTG  848

seq1  CTCTTTGGCTTCCACATGGAAGTGCATGCATATATGCATGCATGCACGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGCTTCCACATGGAAGTGCATGCATATATGCATGCATGCACGAA  898

seq1  CTCTTATATATGAACATGTTCATATGTACACATATTAAGGGGAAAAGGAG  950
      |||||||||||| ||||||||||||||||||||||  ||||||||  |||
seq2  CTCTTATATATG-ACATGTTCATATGTACACATAT--AGGGGAAA--GAG  943

seq1  AAAAGAAACTACTTAACCCAAATGGAGATC-TATGAATGAGAGACAGCAC  999
      ||||| |||||||| ||||||   |||||| |||| ||||  ||| ||||
seq2  AAAAG-AACTACTT-ACCCAA--TGAGATCTTATG-ATGAAGGAC-GCAC  987

seq1  ATGTGACTTGAACTGTAATGCTTATGAAAGAGTAAAATCCTGGGAATTGG  1049
      |||||||||| ||||| |||||||||  ||||| |||||||||  ||| |
seq2  ATGTGACTTG-ACTGT-ATGCTTATG--AGAGT-AAATCCTGG--ATTTG  1030

seq1  AAATAGGGACATTTACTGTACTTTATTTTT  1079
       |||||||||| ||||||||| ||||||||
seq2  GAATAGGGACA-TTACTGTAC-TTATTTTT  1058