BAC Information

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BAC

Clone NameB6Ng01-160C04
Chromosome13 (Build37)
Map Location 72,932,744 - 72,933,931
singlet/doubletsinglet
Overlap genenone
Upstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160C04.bB6Ng01-160C04.g
ACCDH953592DH953593
length1,1791,182
definitionDH953592|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C04, 5' end.DH953593|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagtgaagtctgccttttgggctcaaaatgcctggaggccttca
cgaggcaaagagtttcaaggaaactcagcctcttggaaccttggcattct
catagcccatatactcaaactctgtccccgtgttagtatggtgtatgctc
tctttcagtattgtcttattataagtgcctttaaagattgaattctgaca
taggcaagcctccaccagtgttccaacgtcctagaaaatccttgaagcca
ttgagttaggacttcagtaagaatgttacctaacattcaaattcacttct
agtagagtgggtgaagctaattaggcattacaaagaacggagctagaata
gctcagggctagtctgcagagtgattacttaagacaatagcccaaacaag
ggaatactcaatggcctagtgaaaaggtgggttaaacatgaaagagttag
ggaatccccctgggacaggtttcttcaccaggcccaaaggaacagcataa
tcaggcatttactaagaacccctggtggtgggcttaaaaatagactagca
ttacacctggctcctttcttagtggtaaacagcggcctggtccccaccat
cttttgatgtatacattccttttgctttgtgtcaatgtaacttggcagat
gtgttcgcctggcttttcttggttttcttctgtataaaaaaggtctggtg
ttcctttggaggacacgttcagatccaacacactctctcgagtctgagtc
tgtttgtcacttgctgactcctttgcccatctgccaccagaaacatgatc
cgctcagataggagaccccaaagatgttagtctgcacacttctctccatc
tttttctcccctttcttcctcatttgtccctcctccctcccttctttctc
tttgtctccatttctccatcctcccttcttctctgttcattccttctccc
ccttctctgtcatctctccctcccttccttttccctcttcttacactcta
ctccacatgacctcagtaaatgaataccccctcatgttatttctgaaata
ggtgctttccacatcaggttctaacttgggctcatgtggtggtggtgata
atggctcaatcttgatggtatttatgtgtgccaggagtagtattattatg
gtgtgtgtggaggatggatgatatatggt
gaattcaccaggaaaactgctaagacaggcaccaagtctacagagaaaag
ggagaacaaactgagtccatctgaaggaaatgtttcagatacaaacacag
atgccaaaagcaaaagtgaacactagacacaccttgcaaaaatcatcatg
aataagctctttgccaggagtagtaagctggggcagatctcctttaaaat
gctagggtccttgagatacaataggagagacaacaaaaagccagccagag
ctatgagaaaatagtacacacatgtgtgactagaagctttcctgagaatg
ttcgtctgtgaatggatgcatgttacagcaccaaatatgtgtatgcattt
gtgcaatgcacatttgtgtaatatatgaatctacctgttggcacatacag
acactcaaactctgacacaatcttagaacaagaaaataccacattaaaat
cagtggacttgccttgggagatggtttagtggataaaatctgaggatctg
ggcccaaacctgcagaagtaatgaaaaaagcaggactagttagcacgagt
gtttgtaacatcagtacttccacaggaagatggggactggagctaggaga
atctgggaaacttatggtccagctatccccgtacaggcaggaccaacaaa
gagatccttttccagacaatgtggaagaccactatgtcttccttggaagc
ttaaaatggcatatctagtttgcaaagccatataaatatattctttgcac
ctatcttgaatcaaccaatgggctttactcataactgtgtcaagccagcc
aggggaaccactgagcagatggataattaagtttattgtagtgatataag
aatagaaaagcaaccagaaacacagatgaaggtttggtaccaagggcagc
atggagaactctgcaagcttgtgttgagcaggagggaccaggtacactgg
gaacaaacaggaccctcagccatggatctgtgggagcaaaactgatggac
agctgctgacacagtgggtcatgaaatctttcttgggagagaaggcaagg
gcaacctcttgacggactggctctcactgcttacatgtcttatctcaaca
ggcccagcacgtacaatggattggtacattcaatacagcctgttaaggtt
tattactgcgcaggggagatctccctaaccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_72932744_72933931
seq2: B6Ng01-160C04.g_69_1250

seq1  GAATTCACCAGGAAAACTGCTAAGACAGGCACCAAGTCTACAGAGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGGAAAACTGCTAAGACAGGCACCAAGTCTACAGAGAAAAG  50

seq1  GGAGAACAAACTGAGTCCATCTGAAGGAAATGTTTCAGATACAAACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAAACTGAGTCCATCTGAAGGAAATGTTTCAGATACAAACACAG  100

seq1  ATGCCAAAAGCAAAAGTGAACACTAGACACACCTTGCAAAAATCATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAAGCAAAAGTGAACACTAGACACACCTTGCAAAAATCATCATG  150

seq1  AATAAGCTCTTTGCCAGGAGTAGTAAGCTGGGGCAGATCTCCTTTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTCTTTGCCAGGAGTAGTAAGCTGGGGCAGATCTCCTTTAAAAT  200

seq1  GCTAGGGTCCTTGAGATACAATAGGAGAGACAACAAAAAGCCAGCCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGTCCTTGAGATACAATAGGAGAGACAACAAAAAGCCAGCCAGAG  250

seq1  CTATGAGAAAATAGTACACACATGTGTGACTAGAAGCTTTCCTGAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGAAAATAGTACACACATGTGTGACTAGAAGCTTTCCTGAGAATG  300

seq1  TTCGTCTGTGAATGGATGCATGTTACAGCACCAAATATGTGTATGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCTGTGAATGGATGCATGTTACAGCACCAAATATGTGTATGCATTT  350

seq1  GTGCAATGCACATTTGTGTAATATATGAATCTACCTGTTGGCACATACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATGCACATTTGTGTAATATATGAATCTACCTGTTGGCACATACAG  400

seq1  ACACTCAAACTCTGACACAATCTTAGAACAAGAAAATACCACATTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAAACTCTGACACAATCTTAGAACAAGAAAATACCACATTAAAAT  450

seq1  CAGTGGACTTGCCTTGGGAGATGGTTTAGTGGATAAAATCTGAGGATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGACTTGCCTTGGGAGATGGTTTAGTGGATAAAATCTGAGGATCTG  500

seq1  GGCCCAAACCTGCAGAAGTAATGAAAAAAGCAGGACTAGTTAGCACGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAACCTGCAGAAGTAATGAAAAAAGCAGGACTAGTTAGCACGAGT  550

seq1  GTTTGTAACATCAGTACTTCCACAGGAAGATGGGGACTGGAGCTAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAACATCAGTACTTCCACAGGAAGATGGGGACTGGAGCTAGGAGA  600

seq1  ATCTGGGAAACTTATGGTCCAGCTATCCCCGTACAGGCAGGACCAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAAACTTATGGTCCAGCTATCCCCGTACAGGCAGGACCAACAAA  650

seq1  GAGATCCTTTTCCAGACAAGGTGGAAGACCACTATGTCTTCCTTGGAAGC  700
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGATCCTTTTCCAGACAATGTGGAAGACCACTATGTCTTCCTTGGAAGC  700

seq1  TTAAAATGGCATATCTAGTTTGCAAAGCCATATAAATATATTCTTTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGGCATATCTAGTTTGCAAAGCCATATAAATATATTCTTTGCAC  750

seq1  CTATCTTGAATCAACCAATGGGCTTTACTCATAACTGTGTCAAGCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGAATCAACCAATGGGCTTTACTCATAACTGTGTCAAGCCAGCC  800

seq1  AGGGGAACCACTGAGCAGATGGATAATTAAGTTTATTGTAGTGATATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAACCACTGAGCAGATGGATAATTAAGTTTATTGTAGTGATATAAG  850

seq1  AATAGAAAAGCAACCAGAAACACAGATGAAGGTTTGGTACCAAGGGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAGCAACCAGAAACACAGATGAAGGTTTGGTACCAAGGGCAGC  900

seq1  ATGGAGAACCTCTGCAAGCTTGTGTTGAGCAAGAGGGACCAGGTACAACT  950
      |||||||| |||||||||||||||||||||| |||||||||||||| |||
seq2  ATGGAGAA-CTCTGCAAGCTTGTGTTGAGCAGGAGGGACCAGGTAC-ACT  948

seq1  GGGAACAAACAGGAACCCTCAGCCATGGATCTGT-GGAGCAAAAACTGAT  999
      ||||||||||||| |||||||||||||||||||| ||||| |||||||||
seq2  GGGAACAAACAGG-ACCCTCAGCCATGGATCTGTGGGAGC-AAAACTGAT  996

seq1  GGACAGCTGCTGACACAGTGGGTCATGAAATCTTTCTTGGGAGAG-AGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGACAGCTGCTGACACAGTGGGTCATGAAATCTTTCTTGGGAGAGAAGGC  1046

seq1  AAGGGCAACCTCTTGACCGAACTGGCTTCTCAACTGCTTACATGTCATAT  1098
      |||||||||||||||| || |||||| |||| |||||||||||||| |||
seq2  AAGGGCAACCTCTTGA-CGGACTGGC-TCTC-ACTGCTTACATGTCTTAT  1093

seq1  CTCACCA-GCCCAGCCACTTAACATGGATTTGTTACATATCAAT-CAGCT  1146
      |||| || |||||| ||| ||  ||||| ||| ||||| ||||| |||| 
seq2  CTCAACAGGCCCAG-CACGTACAATGGA-TTGGTACAT-TCAATACAGCC  1140

seq1  GGTTAAAGTTTTATTACT--GCAGGTGAGTGCTCCCTAAACCAG  1188
       ||| ||| |||||||||  ||||| |||  |||||| ||||||
seq2  TGTT-AAGGTTTATTACTGCGCAGGGGAGATCTCCCT-AACCAG  1182