BAC Information

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BAC

Clone NameB6Ng01-160C08
Chromosome13 (Build37)
Map Location 51,629,656 - 51,737,822
singlet/doubletdoublet
Overlap geneShc3
Upstream geneGm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3
Downstream geneCks2, Secisbp2, Sema4d, Gadd45g, LOC100040321, Diras2, LOC100040572, Syk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160C08.bB6Ng01-160C08.g
ACCDH953600DH953601
length846130
definitionDH953600|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C08, 5' end.DH953601|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,629,656 - 51,630,500)(51,737,693 - 51,737,822)
sequence
gaattcctacagagaccatacatcacacccagcaagatggcaaagtggaa
acccaacgtgaagtgtgggtgagggcatcaagtactgtggagtctcagtc
ctgactgtagaaacacaggatgagagaagccctacagcatggtttggcat
tttcttccccagtgagacacgggtgtgactcagcaagtccattccaggag
aaatgaacccagcgtccaccaaaagaaatatacaaagaagcccagagtac
tgcaactcatcagagcctcaaagtggaaaccagactgcatccatcaatag
aatatgatcgagtacacggtggtacattctgtaataccccaccacacagt
aaccaggatggaaggacctccaacagcttagctctatgtccaacccagcc
actgcccaaccacatccgagctaaccaactcacaaagagaaaaggttcat
tctaatgcagtaactaatgtgccactctaatgcaaggccatgcaaagcct
tactcatcccggaaatactgcccagccccactctgggctgaatgctcatc
ttgatgctgagtaggatacggtgagaggtgagggagcccctgaacatact
gaggctccacttggtaaggatagcgggtcacagatgtcagtccagatttc
actaccttttattcttcttgtgccaagtgcctgcctgtattcctgccaaa
ccaaaagtctcacactggtcccgacccatacctcacctctgtatattgag
ttatcctgcctggagtctttctcttctctccaacctctcaaaccctccct
ataattcctaagaggcacatggcatatatatatatatatgtgtgtg
agtacaaacagagagaaatgaagcaatggcccaatcctgtgagttcaaat
atccaacactcatgtaaagagccggtgcggccatgcatggctgtaacccc
tgcgttataaagggggggtggggtggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_51629656_51630500
seq2: B6Ng01-160C08.b_47_892

seq1  GAATTCCTACAGAGACCATACATCACACCCAGCAAGATGGCAAAGTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAGAGACCATACATCACACCCAGCAAGATGGCAAAGTGGAA  50

seq1  ACCCAACGTGAAGTGTGGGTGAGGGCATCAAGTACTGTGGAGTCTCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACGTGAAGTGTGGGTGAGGGCATCAAGTACTGTGGAGTCTCAGTC  100

seq1  CTGACTGTAGAAACACAGGATGAGAGAAGCCCTACAGCATGGTTTGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTAGAAACACAGGATGAGAGAAGCCCTACAGCATGGTTTGGCAT  150

seq1  TTTCTTCCCCAGTGAGACACGGGTGTGACTCAGCAAGTCCATTCCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCCAGTGAGACACGGGTGTGACTCAGCAAGTCCATTCCAGGAG  200

seq1  AAATGAACCCAGCGTCCACCAAAAGAAATATACAAAGAAGCCCAGAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACCCAGCGTCCACCAAAAGAAATATACAAAGAAGCCCAGAGTAC  250

seq1  TGCAACTCATCAGAGCCTCAAAGTGGAAACCAGACTGCATCCATCAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTCATCAGAGCCTCAAAGTGGAAACCAGACTGCATCCATCAATAG  300

seq1  AATATGATCGAGTACACGGTGGTACATTCTGTAATACCCCACCACACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATCGAGTACACGGTGGTACATTCTGTAATACCCCACCACACAGT  350

seq1  AACCAGGATGGAAGGACCTCCAACAGCTTAGCTCTATGTCCAACCCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGATGGAAGGACCTCCAACAGCTTAGCTCTATGTCCAACCCAGCC  400

seq1  ACTGCCCAACCACATCCGAGCTAACCAACTCACAAAGAGAAAAGGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCAACCACATCCGAGCTAACCAACTCACAAAGAGAAAAGGTTCAT  450

seq1  TCTAATGCAGTAACTAATGTGCCACTCTAATGCAAGGCCATGCAAAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGCAGTAACTAATGTGCCACTCTAATGCAAGGCCATGCAAAGCCT  500

seq1  TACTCATCCCGGAAATACTGCCCAGCCCCACTCTGGGCTGAATGCTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATCCCGGAAATACTGCCCAGCCCCACTCTGGGCTGAATGCTCATC  550

seq1  TTGATGCTGAGTAGGATACGGTGAGAGGTGAGGGAGCCCCTGAACATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTGAGTAGGATACGGTGAGAGGTGAGGGAGCCCCTGAACATACT  600

seq1  GAGGCTCCACTTGGTAAGGATAGCGGGTCACAGATGTCAGTCCAGATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCCACTTGGTAAGGATAGCGGGTCACAGATGTCAGTCCAGATTTC  650

seq1  ACTACCTTTTATTCTTCTTGTGCCAAGTGCCTGCCTGTATTCCTGCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTTTTATTCTTCTTGTGCCAAGTGCCTGCCTGTATTCCTGCCAAA  700

seq1  CCAAAAGTCTCACACTGGTCCCGACCCATACCTCACCTCTGTATATTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTCTCACACTGGTCCCGACCCATACCTCACCTCTGTATATTGAG  750

seq1  TTATCCTGCCTGGAGTC-TTCTCTTCTCTCCAACCTCTCAAACCCTCCCT  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTATCCTGCCTGGAGTCTTTCTCTTCTCTCCAACCTCTCAAACCCTCCCT  800

seq1  ATAATTCCTAAGAGGCACATGGCATATATATATATATATGTGTGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCCTAAGAGGCACATGGCATATATATATATATATGTGTGTG  846

seq1: chr13_51737693_51737822
seq2: B6Ng01-160C08.g_73_202 (reverse)

seq1  TCCCCCACCCCACCCCCCCTTTATAACGCAGGGGTTACAGCCATGCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCCCACCCCCCCTTTATAACGCAGGGGTTACAGCCATGCATGG  50

seq1  CCGCACCGGCTCTTTACATGAGTGTTGGATATTTGAACTCACAGGATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACCGGCTCTTTACATGAGTGTTGGATATTTGAACTCACAGGATTGG  100

seq1  GCCATTGCTTCATTTCTCTCTGTTTGTACT  130
      ||||||||||||||||||||||||||||||
seq2  GCCATTGCTTCATTTCTCTCTGTTTGTACT  130