BAC Information

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BAC

Clone NameB6Ng01-161K06
Chromosome13 (Build37)
Map Location 89,568,422 - 89,746,124
singlet/doubletdoublet
Overlap geneHapln1, EG667266
Upstream geneLOC667230, EG435375, Edil3
Downstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161K06.bB6Ng01-161K06.g
ACCDH954701DH954702
length9571,125
definitionDH954701|Mus musculus domesticus DNA, BAC clone: B6Ng01-161K06, 5' end.DH954702|Mus musculus domesticus DNA, BAC clone: B6Ng01-161K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,745,159 - 89,746,124)(89,568,422 - 89,569,563)
sequence
gaattcaaatctgacctctacatatttccaaaatgaaatttgcttgagat
acagatctgtctattcagtgccatgaatggctgcagcagtgtggctcgct
agagctacatcattcaaagctctgatgggtaaatctttgaagtctaagtt
gttacccttttcgtttactcacgagtctatttccagggatcttaaatata
aaaccaagggcctagagcttgattagtagggatttgacttatgcagctac
tctggttcctcaatgagaaggtcctatgcacgttttaaggctctgtagtt
tgcttctgcttgttagtttgagacagtctcattatatagctcaggctagc
cttgaacttataatcctcccttctcagtctactaaataataggctttcat
cacaatatggcttaaaactcttaatcaatttcgaacaaaggcccctacat
tttcattttgtaataggcccccaaggttatgttggggatggtccagtaaa
gaggctgggagtgggaagggcgcagtgagtctacaatcagtgctgtgaga
cccttccctgcctttctcttcaaggctgattgtgctgtatttgtctcact
cagttcccaacttgccttgaacttttgttaagcatgatactgtgactgga
aagagagggcatgtacaaccaggatgctccttccctcagcagagagcagt
actgcagggacagcacactatggcagcctgaaacggttaaactgtagtga
atgcggaagtatgtggcttttgttggattcatgtagatattataaaatta
tgacatgcaagattcaagaacatttgcctctttttaaaatacagaatacc
ttaaaggatgctttttattgctgttttctttgcctgctttgtttttgttc
gtttttgtttttggttttgttggttttagaaaataataccaaaaattcaa
acattgt
gaattccaaaggcatacactgaatttcaagcaaaccccggagtctgcctt
tatcccagagtagggcattgtggtctggagcgccggagacacatcccagt
aatgtggagactgacggttcattctgggacagacactcagactaatgcaa
ctaaatagatttgggccacccaaaaacagttgtcacagcatgaatatgaa
cagtactctccaaggaccctctttattaaaaggcctctctcctggggagg
cactattagaaggcaaaatctgaaggcatctttaagatgaaaatagtaag
tcagtgggggagggctaggaccatagtgctttgacctatttgcttcttgg
ctcccaaagtgagttgtttgttccatcacacacccccaatatgatgtgtc
atccttagccggagctcaatgaagtggagtcatttaatcttgaactataa
cttcagacccataaacagaaattaaacttttctctttataaattagctgc
gttttttaatttgagtaaaatatcctcactggctctcatgttcagatctt
acttagtcccagttgaggtaactgtgttggaaagttctggaaacgttagt
tgactgggcttcaagtgaaagtgggttatttggatggggagcttgagatt
ttagacctggcttatgttgctttctaacttcagacccagtatgaatagcc
acctcttcctcctaccgccatggtttttctgccaatccttgagttaaatg
aaattccccatccctttagatgcttatataaggcattttgctacagcaac
aagaaaaatggccagtcgttgtctcccaagtatctctttatggtggcatg
gcaacaaatacatcattttctcaagttaaattaccaaagtacctggcttc
ccaggagtaaactataaaatcactgctaataacagacctggaaaccattc
ttattccttaatacaagataagcagatcttggtaatatctaaagcatact
acattcagcagaaagtcagatgagcctggacgaattcatggttttctaaa
tagatttagcattagccccattagaagagtcatctccgatccttcacctc
caccccatgtgggtctgctatctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89745159_89746124
seq2: B6Ng01-161K06.b_35_991 (reverse)

seq1  ACACTGTTTGAA-TTTTGGTATTATCTTCTAAAAACCAAACAAAAACAAA  49
      ||| |||||||| |||||||||||| ||||||||  | ||||||| ||||
seq2  ACAATGTTTGAATTTTTGGTATTATTTTCTAAAA--CCAACAAAACCAAA  48

seq1  AACAAAAAACGAACAAAAAACAAAAAGCAAGCAAAGAAAAAACAGCAATA  99
      ||| ||||||||||||||   | |||||| ||||||  ||||||||||||
seq2  AAC-AAAAACGAACAAAA---ACAAAGCAGGCAAAG--AAAACAGCAATA  92

seq1  AAAAGCAATCCTTTAAGGTATTACTGTATTTTAAAAAGAGGCAAAATGTT  149
      |||||| ||||||||||||||| ||||||||||||||||||| |||||||
seq2  AAAAGC-ATCCTTTAAGGTATT-CTGTATTTTAAAAAGAGGC-AAATGTT  139

seq1  CTTGAATCTTGCATGTCATAATTTTTATAATATCTACATGAATCCAACAA  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTGAATCTTGCATGTCATAA-TTTTATAATATCTACATGAATCCAACAA  188

seq1  AAGCCACATACTTCCGCATTCACTACAGTTTAACCGTTTCAGGCTGCCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACATACTTCCGCATTCACTACAGTTTAACCGTTTCAGGCTGCCAT  238

seq1  AGTGTGCTGTCCCTGCAGTACTGCTCTCTGCTGAGGGAAGGAGCATCCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTGTCCCTGCAGTACTGCTCTCTGCTGAGGGAAGGAGCATCCTG  288

seq1  GTTGTACATGCCCTCTCTTTCCAGTCACAGTATCATGCTTAAC-AAAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTGTACATGCCCTCTCTTTCCAGTCACAGTATCATGCTTAACAAAAGTT  338

seq1  CAAGGCAAGTTGGGAACTGAGTGAGACAAATACAGCACAATCAGCCTTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAGTTGGGAACTGAGTGAGACAAATACAGCACAATCAGCCTTGA  388

seq1  AGAGAAAGGCAGGGAAGGGTCTCACAGCACTGATTGTAGACTCACTGCGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGCAGGGAAGGGTCTCACAGCACTGATTGTAGACTCACTGCGC  438

seq1  CCTTCCCACTCCCAGCCTCTTTACTGGACCATCCCCAACATAACCTTGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCACTCCCAGCCTCTTTACTGGACCATCCCCAACATAACCTTGGG  488

seq1  GGCCTATTACAAAATGAAAATGTAGGGGCCTTTGTTCGAAATTGATTAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATTACAAAATGAAAATGTAGGGGCCTTTGTTCGAAATTGATTAAG  538

seq1  AGTTTTAAGCCATATTGTGATGAAAGCCTATTATTTAGTAGACTGAGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAGCCATATTGTGATGAAAGCCTATTATTTAGTAGACTGAGAAG  588

seq1  GGAGGATTATAAGTTCAAGGCTAGCCTGAGCTATATAATGAGACTGTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTATAAGTTCAAGGCTAGCCTGAGCTATATAATGAGACTGTCTC  638

seq1  AAACTAACAAGCAGAAGCAAACTACAGAGCCTTAAAACGTGCATAGGACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACAAGCAGAAGCAAACTACAGAGCCTTAAAACGTGCATAGGACC  688

seq1  TTCTCATTGAGGAACCAGAGTAGCTGCATAAGTCAAATCCCTACTAATCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTGAGGAACCAGAGTAGCTGCATAAGTCAAATCCCTACTAATCA  738

seq1  AGCTCTAGGCCCTTGGTTTTATATTTAAGATCCCTGGAAATAGACTCGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGGCCCTTGGTTTTATATTTAAGATCCCTGGAAATAGACTCGTG  788

seq1  AGTAAACGAAAAGGGTAACAACTTAGACTTCAAAGATTTACCCATCAGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACGAAAAGGGTAACAACTTAGACTTCAAAGATTTACCCATCAGAG  838

seq1  CTTTGAATGATGTAGCTCTAGCGAGCCACACTGCTGCAGCCATTCATGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATGATGTAGCTCTAGCGAGCCACACTGCTGCAGCCATTCATGGC  888

seq1  ACTGAATAGACAGATCTGTATCTCAAGCAAATTTCATTTT-CAAATATGT  947
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  ACTGAATAGACAGATCTGTATCTCAAGCAAATTTCATTTTGGAAATATGT  938

seq1  AGAGGTCAGATTTGAATTC  966
      |||||||||||||||||||
seq2  AGAGGTCAGATTTGAATTC  957

seq1: chr13_89568422_89569563
seq2: B6Ng01-161K06.g_65_1189

seq1  GAATTCCAAAGGCATACACTGAATTTCAAGCAAACCCCGGAGTCTGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGGCATACACTGAATTTCAAGCAAACCCCGGAGTCTGCCTT  50

seq1  TATCCCAGAGTAGGGCATTGTGGTCTGGAGCGCCGGAGACACATCCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGAGTAGGGCATTGTGGTCTGGAGCGCCGGAGACACATCCCAGT  100

seq1  AATGTGGAGACTGACGGTTCATTCTGGGACAGACACTCAGACTAATGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGAGACTGACGGTTCATTCTGGGACAGACACTCAGACTAATGCAA  150

seq1  CTAAATAGATTTGGGCCACCCAAAAACAGTTGTCACAGCATGAATATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAGATTTGGGCCACCCAAAAACAGTTGTCACAGCATGAATATGAA  200

seq1  CAGTACTCTCCAAGGACCCTCTTTATTAAAAGGCCTCTCTCCTGGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTCTCCAAGGACCCTCTTTATTAAAAGGCCTCTCTCCTGGGGAGG  250

seq1  CACTATTAGAAGGCAAAATCTGAAGGCATCTTTAAGATGAAAATAGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTAGAAGGCAAAATCTGAAGGCATCTTTAAGATGAAAATAGTAAG  300

seq1  TCAGTGGGGGAGGGCTAGGACCATAGTGCTTTGACCTATTTGCTTCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGGGAGGGCTAGGACCATAGTGCTTTGACCTATTTGCTTCTTGG  350

seq1  CTCCCAAAGTGAGTTGTTTGTTCCATCACACACCCCCAATATGATGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAAGTGAGTTGTTTGTTCCATCACACACCCCCAATATGATGTGTC  400

seq1  ATCCTTAGCCGGAGCTCAATGAAGTGGAGTCATTTAATCTTGAACTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGCCGGAGCTCAATGAAGTGGAGTCATTTAATCTTGAACTATAA  450

seq1  CTTCAGACCCATAAACAGAAATTAAACTTTTCTCTTTATAAATTAGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACCCATAAACAGAAATTAAACTTTTCTCTTTATAAATTAGCTGC  500

seq1  GTTTTTTAATTTGAGTAAAATATCCTCACTGGCTCTCATGTTCAGATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAATTTGAGTAAAATATCCTCACTGGCTCTCATGTTCAGATCTT  550

seq1  ACTTAGTCCCAGTTGAGGTAACTGTGTTGGAAAGTTCTGGAAACGTTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCCCAGTTGAGGTAACTGTGTTGGAAAGTTCTGGAAACGTTAGT  600

seq1  TGACTGGGCTTCAAGTGAAAGTGGGTTATTTGGATGGGGAGCTTGAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGCTTCAAGTGAAAGTGGGTTATTTGGATGGGGAGCTTGAGATT  650

seq1  TTAGACCTGGCTTATGTTGCTTTCTAACTTCAGACCCAGTATGAATAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCTGGCTTATGTTGCTTTCTAACTTCAGACCCAGTATGAATAGCC  700

seq1  ACCTCTTCCTCCTACCGCCATGGTTTTTCTGCCAATCCTTGAGTTAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCCTCCTACCGCCATGGTTTTTCTGCCAATCCTTGAGTTAAATG  750

seq1  AAATTCCCCATCCCTTTAGATGCTTATATAAGGCATTTTGCTACAGCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCCATCCCTTTAGATGCTTATATAAGGCATTTTGCTACAGCAAC  800

seq1  AAGAAAAAATGGCCAGTCG-TGTCTCCCAAGTATCTCTTTATGGTGGCAT  849
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAG-AAAAATGGCCAGTCGTTGTCTCCCAAGTATCTCTTTATGGTGGCAT  849

seq1  GGC-ACAAATACATCA-TTTCTCAAGTTAAA-TACCAAAGTACCTGGCTT  896
      ||| |||||||||||| |||||||||||||| ||||||||||||||||||
seq2  GGCAACAAATACATCATTTTCTCAAGTTAAATTACCAAAGTACCTGGCTT  899

seq1  CCCAGGAGT-AACTATAAAAATCACTGCTAATTACCAGACCTGGAAACCA  945
      ||||||||| |||||| |||||||||||||| || |||||||||||||||
seq2  CCCAGGAGTAAACTAT-AAAATCACTGCTAA-TAACAGACCTGGAAACCA  947

seq1  TTCTTATGCACTTAAGACAAGATAAGGCAGATC-TGGTAATTATCTAAAA  994
      ||||||| | ||||| ||||||||| ||||||| |||||| ||||| |||
seq2  TTCTTATTC-CTTAATACAAGATAA-GCAGATCTTGGTAA-TATCT-AAA  993

seq1  GCATACTACAATCAGGCAAGGAAAGTCAGAATGAGCCTGAACGAATATCA  1044
      |||||||||| ||| |||  ||||||||| ||||||||| |||||| |||
seq2  GCATACTACATTCA-GCA--GAAAGTCAG-ATGAGCCTGGACGAAT-TCA  1038

seq1  TGGTTTTCTAAAATAGATTTAGCATTTAGGACACCATAGAGAATGTCCAT  1094
      ||||||||| |||||||||||||| ||||  | ||||  ||||    |||
seq2  TGGTTTTCT-AAATAGATTTAGCA-TTAG--CCCCAT-TAGAAGAGTCAT  1083

seq1  CTTCAGATTCCCTTCCACCTCCACCCTCATGTGGGTCTGCATATCTAG  1142
      | || |||  |||| ||||||||||| ||||||||||||| |||||||
seq2  C-TCCGAT--CCTT-CACCTCCACCC-CATGTGGGTCTGC-TATCTAG  1125