BAC Information

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BAC

Clone NameB6Ng01-162F03
Chromosome13 (Build37)
Map Location 11,573,200 - 11,574,353
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039648
Downstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162F03.bB6Ng01-162F03.g
ACCDH955189DH955190
length1,1341,065
definitionDH955189|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F03, 5' end.DH955190|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagttcaatctaaggaagttcttaaaaacttccagcattccaagg
cagccatattaaggtgggctgtctcaaagagtcaagtattgagcagatgt
tcactggtggcattggtctcttccattgatattgtttgattctattattt
atgctgcatctttccatgtatctacagacccaatatctgatacccagcac
atctaaaggcagcagtatctttccacaatctgccttttactagtaacatc
tgagtcacttttaggattcctcttaggtctttgatccaaaaggtcatgat
tcaattccttcatgctacctaggcctggtggcataattttagctactttg
gagtgatagggttggagaatcacaagttaaaggctatcttggtctaaaat
gggagttcaaggctaacctggccaacttagtaagattctgtaccaaaaaa
caaggcggaaacaggcctggaaaggtagcttatggacaagagtgcttact
tagccctgaaatgccgttggttgaaccctcaatattatattcctgataac
aatgaaaactggtgtaggcactatagaaaaaaggacagaggatcctcaaa
gaactagattcaaccaagctatatggcctggacataacttctaggctttc
tcctcaaagactccaaatcaacttgccacagagataattacacatcattt
tctgcagtaaaattcacaatggctaagaactgaaccaaacaaactaggtg
tccactaacaaaagactagagaagaaaaatgtaacaaatgtacaaaatag
acttttaaaaactagcaaaattacactgttttcaagaatgtggacatcat
ttctatggtactaatcaaattaagtcagtctcagaaaaacaaatatggtg
tgacacctagtagtctttatagcattaaactgtgtagacaacgacacaat
gtggaagcaaacttcatagggaaacccagggggctagtgggaggagacac
caagcatgatgggacacaggagatatgggaggagaagagaagcgagaccc
tagcatggagagaattgctcaaatatattattatatactgcatgaaatga
cctcatgttattctgtttgacagatgcttcaaat
gaattcttgactaaacccatctggtcctgagctttttttggtgggagact
attaatggctgcttctatttcttttggggttatgggactgtttagaagat
ttgcctgatcctgattctttggcacctagtttgtgtctagaaaattgtcc
atttcatccagattttccaattttgttgagtataggtttttgtagtagga
tctgatgattttctgaatttccacagtttctgttgttatgtctccctttt
catttattattttattaatttggatactgtctctttgccctctggttagt
ctggctaatgctttctctagcttgttgattttctcaaagaaccacctcct
ggcttggttgattctttgtatagttctttttgtttctatttggttgcttt
cagccctgaatttgattatttcccgctgtctactcctcttgagtgaattt
gcttcttttttttctagagcttttaggtgtgctgtcaagctgctagtgta
agctctctctagtttctttttagaggcatttagagctatgagttttcctc
ttaggtctgctttcattgtgtccagttagttttggtatgatgtgtcttcc
ttttctctgaattctaaaaagtctttaatttctttctctatttcttcctt
gaccaagttatcattgagcagagcattgttcagcttacatgtgtatgcat
gttttcctttgtttttgttaaaatttaagaccagccatggttcatggtga
tctgatagtgtgcatgggattatttcaatcttcttgtatctgttgaggcc
tgtttttgtgaccaattatatgatcaatttttgagaaggtactatgaggt
ttgagaagaaggtatggtcttttgctttagggtgaaaagttctataaata
cctgttagatccatttgattcataacttctgttagtttcactgtgtctct
gttagtttccttttccatgatctgtcattgataagaatgggtattgagtg
gtcccactattattgtgtggggtgtgtggatagctttgagctccataaag
ttttcttatatagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_11573200_11574353
seq2: B6Ng01-162F03.b_47_1180

seq1  GAATTCAGTTCAATCTAAGGAAGTTCTTAAAAACTTCCAGCATTCCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCAATCTAAGGAAGTTCTTAAAAACTTCCAGCATTCCAAGG  50

seq1  CAGCCATATTAAGGTGGGCTGTCTCAAAGAGTCAAGTATTGAGCAGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATATTAAGGTGGGCTGTCTCAAAGAGTCAAGTATTGAGCAGATGT  100

seq1  TCACTGGTGGCATTGGTCTCTTCCATTGATATTGTTTGATTCTATTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTGGCATTGGTCTCTTCCATTGATATTGTTTGATTCTATTATTT  150

seq1  ATGCTGCATCTTTCCATGTATCTACAGACCCAATATCTGATACCCAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCATCTTTCCATGTATCTACAGACCCAATATCTGATACCCAGCAC  200

seq1  ATCTAAAGGCAGCAGTATCTTTCCACAATCTGCCTTTTACTAGTAACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAGGCAGCAGTATCTTTCCACAATCTGCCTTTTACTAGTAACATC  250

seq1  TGAGTCACTTTTAGGATTCCTCTTAGGTCTTTGATCCAAAAGGTCATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACTTTTAGGATTCCTCTTAGGTCTTTGATCCAAAAGGTCATGAT  300

seq1  TCAATTCCTTCATGCTACCTAGGCCTGGTGGCATAATTTTAGCTACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCTTCATGCTACCTAGGCCTGGTGGCATAATTTTAGCTACTTTG  350

seq1  GAGTGATAGGGTTGGAGAATCACAAGTTAAAGGCTATCTTGGTCTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATAGGGTTGGAGAATCACAAGTTAAAGGCTATCTTGGTCTAAAAT  400

seq1  GGGAGTTCAAGGCTAACCTGGCCAACTTAGTAAGATTCTGTACCAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCAAGGCTAACCTGGCCAACTTAGTAAGATTCTGTACCAAAAAA  450

seq1  CAAGGCGGAAACAGGCCTGGAAAGGTAGCTTATGGACAAGAGTGCTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCGGAAACAGGCCTGGAAAGGTAGCTTATGGACAAGAGTGCTTACT  500

seq1  TAGCCCTGAAATGCCGTTGGTTGAACCCTCAATATTATATTCCTGATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGAAATGCCGTTGGTTGAACCCTCAATATTATATTCCTGATAAC  550

seq1  AATGAAAACTGGTGTAGGCACTATAGAAAAAAGGACAGAGGATCCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACTGGTGTAGGCACTATAGAAAAAAGGACAGAGGATCCTCAAA  600

seq1  GAACTAGATTCAACCAAGCTATATGGCCTGGACATAACTTCTAGGCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGATTCAACCAAGCTATATGGCCTGGACATAACTTCTAGGCTTTC  650

seq1  TCCTCAAAGACTCCAAATCAACTTGCCACAGAGATAATTACACATCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAGACTCCAAATCAACTTGCCACAGAGATAATTACACATCATTT  700

seq1  TCTGCAGTAAAATTCACAATGGCTAAGAACTGAACCAAACAAACTAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTAAAATTCACAATGGCTAAGAACTGAACCAAACAAACTAGGTG  750

seq1  TCCACTAACAAAAGACTAGAGAAGAAAAATGTAACAAATGTACAAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAACAAAAGACTAGAGAAGAAAAATGTAACAAATGTACAAAATAG  800

seq1  ACTTTTAAAAACTAGCAAAATTACACTGTTTTCAAGAATGTGGACATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAAACTAGCAAAATTACACTGTTTTCAAGAATGTGGACATCAT  850

seq1  TTCTATGGTACTAATCAAATTAAGTCAGTCTCAGAAAAACAAATATGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGTACTAATCAAATTAAGTCAGTCTCAGAAAAACAAATATGGTG  900

seq1  TGACACCTAGTAGTCTTTATAGCATTAAACTGTGTAGACAAACGACACAA  950
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TGACACCTAGTAGTCTTTATAGCATTAAACTGTGTAGAC-AACGACAC-A  948

seq1  ATGTGGAAGCAAAACTTCATAGGGAAACCCAGGGGGCTAGTGGGAGGAGG  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  ATGTGGAAGC-AAACTTCATAGGGAAACCCAGGGGGCTAGTGGGAGGAG-  996

seq1  AACACCAAGGCATGATGGGAACACAGGAGAATAATGGGAGGAGAGAGAAA  1050
       ||||||| |||||||||| ||||||||||   ||||||||||| ||| |
seq2  -ACACCAA-GCATGATGGG-ACACAGGAGA--TATGGGAGGAGA-AGAGA  1040

seq1  GGCGAGAACCCTAAGGCATGGAGAGATATGCTCAAAATATATTATTATAT  1100
       ||||| ||||||  |||||||||||  ||||| ||||||||||||||||
seq2  AGCGAG-ACCCTA--GCATGGAGAGAATTGCTC-AAATATATTATTATAT  1086

seq1  ACTTGCATGGAAATGACCTCATG-TAATCTGTTTTGGACAAGAAATGCTT  1149
      || ||||| |||||||||||||| || |||||||  |||   | ||||||
seq2  AC-TGCAT-GAAATGACCTCATGTTATTCTGTTT--GAC---AGATGCTT  1129

seq1  CAAAT  1154
      |||||
seq2  CAAAT  1134