BAC Information

Click to search

BAC

Clone NameB6Ng01-162J22
Chromosome13 (Build37)
Map Location 101,506,346 - 101,628,571
singlet/doubletdoublet
Overlap geneMrps36, Cenph, Ccnb1, Slc30a5
Upstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7
Downstream geneLOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162J22.bB6Ng01-162J22.g
ACCDH955413DH955414
length6311,134
definitionDH955413|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J22, 5' end.DH955414|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,506,346 - 101,506,976)(101,627,458 - 101,628,571)
sequence
gaattcagtatatataagcccagactggcctctgagaaatcatggcaatc
ctcctgcctcagccttctgagttaagattacatttgtgagccaccaatcc
cagacagcttttgatgttttaaaactgattatgattttttaattaattat
ttatttatttaggttttttcgagacagggtttctctgtgtagccctggct
gtcctagaactcactctgcagaccaggctgtccttgaactcagaaatccg
cctgcctctggctcccgagtgctgggattaaaggcatgcgccaccacgcc
cggctcaataatttaacttttatgtacatacagtatcagatgagaaggca
tcagataccctagagttacagacagttgtgagctcccatgtgggtgctgg
aaatcaaacccaggtcctctggaagaaaaaccagtgctcttaagcactga
atcatctatctcttcagcccctgattgcttggttgattgattttacgatt
tatttattttatatatgtgagtacactgtcgctatgttcagatacactag
aagaaggcatagaataccattacagatggttgtaagccaccatgtggttg
ctgggaattgaactcaggacctctggaagaa
gaattcaggtgaggggtcactggccacttccccattgggccctgggtagc
agaggaaggtttaggaatctcaggagtgccgaaggggagcgtttgctagc
aggggaaggttcaggagtgcccaccctttgagctagccatggcatatcat
aaattaactgacatgtgtgggtgtgtctttcattcgagactccaaagaga
tcctgtgggtgggtggctgggagcccaacctactgggaaccaaagcagtg
tggcttaaacgcactgctacatcaactgtcattcatacgtaggagggaag
agtgaagtgtttccaacacacctggacacttgcctgacaatatcatcttc
gcttttattcccgttcagtactcaaaagagaatcacatccatactgttgt
cagttctgcaagcgacatagactaaccaggccacagtacggtctccaaat
ccagagtgaccccctcaaaatgacatcacttatcaaaatacctgtgctcc
ccattctgaatcatttcaggccacaggtaacagcactgtgtgtctgcctc
tactcatgggccaagtctatgtaatttctctcacaatttttgtctctgtc
agttgcttacactgacccttcagaagctagaggggaaatctcctactgct
cccgcaggtgaaaagacagaagttctcgacataagatggaaagttggatt
ttggtagaagtgaatatttttttttctgtgaaatttgtggacatgaattg
tattttatttttgctgtcacaagtcaaacagcaaaagttacagacctggt
gtgtgataaaaaatgcttggttaagacttttaaaaaaaaagtggcactaa
aggaaacggctcagtgtataaactgattgcttgcacaaacatgagaacct
gagttcagaactcacactcatgtagaagctagaccacaacagctggtgcc
tgcaccccagcacggggacgtgggaacaggttgatgcctgggactactgg
ccaccagtcaaactgaaaatgggagcttcagggctcaatgaatggactct
ggctccaaaactcaaaaacagagatgttaaagagggaaatgcttgaaacg
aacctcttggtcctcgtgccatgcaggtcacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_101506346_101506976
seq2: B6Ng01-162J22.b_47_677

seq1  GAATTCAGTATATATAAGCCCAGACTGGCCTCTGAGAAATCATGGCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATATATAAGCCCAGACTGGCCTCTGAGAAATCATGGCAATC  50

seq1  CTCCTGCCTCAGCCTTCTGAGTTAAGATTACATTTGTGAGCCACCAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTCAGCCTTCTGAGTTAAGATTACATTTGTGAGCCACCAATCC  100

seq1  CAGACAGCTTTTGATGTTTTAAAACTGATTATGATTTTTTAATTAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCTTTTGATGTTTTAAAACTGATTATGATTTTTTAATTAATTAT  150

seq1  TTATTTATTTAGGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTAGGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCT  200

seq1  GTCCTAGAACTCACTCTGCAGACCAGGCTGTCCTTGAACTCAGAAATCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGAACTCACTCTGCAGACCAGGCTGTCCTTGAACTCAGAAATCCG  250

seq1  CCTGCCTCTGGCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCACGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGGCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCACGCC  300

seq1  CGGCTCAATAATTTAACTTTTATGTACATACAGTATCAGATGAGAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCAATAATTTAACTTTTATGTACATACAGTATCAGATGAGAAGGCA  350

seq1  TCAGATACCCTAGAGTTACAGACAGTTGTGAGCTCCCATGTGGGTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATACCCTAGAGTTACAGACAGTTGTGAGCTCCCATGTGGGTGCTGG  400

seq1  AAATCAAACCCAGGTCCTCTGGAAGAAAAACCAGTGCTCTTAAGCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAACCCAGGTCCTCTGGAAGAAAAACCAGTGCTCTTAAGCACTGA  450

seq1  ATCATCTATCTCTTCAGCCCCTGATTGCTTGGTTGATTGATTTTACGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTATCTCTTCAGCCCCTGATTGCTTGGTTGATTGATTTTACGATT  500

seq1  TATTTATTTTATATATGTGAGTACACTGTCGCTATGTTCAGATACACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTATATATGTGAGTACACTGTCGCTATGTTCAGATACACTAG  550

seq1  AAGAAGGCATAGAATACCATTACAGATGGTTGTAAGCCACCATGTGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCATAGAATACCATTACAGATGGTTGTAAGCCACCATGTGGTTG  600

seq1  CTGGGAATTGAACTCAGGACCTCTGGAAGAA  631
      |||||||||||||||||||||||||||||||
seq2  CTGGGAATTGAACTCAGGACCTCTGGAAGAA  631

seq1: chr13_101627458_101628571
seq2: B6Ng01-162J22.g_79_1200 (reverse)

seq1  GGTGTGTACCTGCATGTGCA-GA-GACC-AGAGGTCTGTGTCAGGCATTT  47
      |||||| ||||||||| ||| || |||| ||||||  || ||| ||||||
seq2  GGTGTG-ACCTGCATG-GCACGAGGACCAAGAGGTTCGTTTCAAGCATTT  48

seq1  TCCTCTATCAC-TCTCTGTTTTTGAGTTTTTGAGACAGAGT-CACTCATT  95
       ||||| | || |||||||||||||||||| ||| |||||| || |||||
seq2  CCCTCTTTAACATCTCTGTTTTTGAGTTTTGGAGCCAGAGTCCATTCATT  98

seq1  GAG-CCTGGAGCTCACATTTTCAGTTTGACTGGTGGCCAGTAGTCCCAGG  144
      ||| |||| ||||| |||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGAAGCTCCCATTTTCAGTTTGACTGGTGGCCAGTAGTCCCAGG  148

seq1  CATCAACCTGTTCCCACGTCCCCGTGCTGGGGTGGCAGGCACCAGCTGTT  194
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATCAACCTGTTCCCACGTCCCCGTGCTGGGGT-GCAGGCACCAGCTGTT  197

seq1  GT-GTCTAGCTTCTACATGAGTGTGAGTTCTGAACTCAGGTTCTCATGTT  243
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTAGCTTCTACATGAGTGTGAGTTCTGAACTCAGGTTCTCATGTT  247

seq1  TGTGCAAGCAATCAGTTTATACACTGAGCCGTTTCC-TTAGTGCCACTTT  292
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTGCAAGCAATCAGTTTATACACTGAGCCGTTTCCTTTAGTGCCACTTT  297

seq1  TTTTTTAAAAGTCTTAACCAAGCA-TTTTTATCACACACCAGGTCTGTAA  341
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTTTTAAAAGTCTTAACCAAGCATTTTTTATCACACACCAGGTCTGTAA  347

seq1  CTTTTGCTGTTTGACTTGTGACAGCAAAAATAAAATACAATTCATGTCCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTGTTTGACTTGTGACAGCAAAAATAAAATACAATTCATGTCCA  397

seq1  C-AATTTCACAG-AAAAAAAATATTCACTTCTACCAAAATCCAACTTTCC  439
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCACAGAAAAAAAAATATTCACTTCTACCAAAATCCAACTTTCC  447

seq1  ATCTTATGTCGAGAACTTCTGTCTTTTCACCTGCGGGAGCAGTAGGAGAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATGTCGAGAACTTCTGTCTTTTCACCTGCGGGAGCAGTAGGAGAT  497

seq1  TTCCCCTCTAGCTTCTGAAGGGTCAGTGTAAGCAACTGACAGAGACAAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCTAGCTTCTGAAGGGTCAGTGTAAGCAACTGACAGAGACAAAA  547

seq1  ATTGTGAGAGAAATTACATAGACTTGGCCCATGAGTAGAGGCAGACACAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGAGAAATTACATAGACTTGGCCCATGAGTAGAGGCAGACACAC  597

seq1  AGTGCTGTTACCTGTGGCCTGAAATGATTCAGAATGGGGAGCACAGGTAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTTACCTGTGGCCTGAAATGATTCAGAATGGGGAGCACAGGTAT  647

seq1  TTTGATAAGTGATGTCATTTTGAGGGGGTCACTCTGGATTTGGAGACCGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAAGTGATGTCATTTTGAGGGGGTCACTCTGGATTTGGAGACCGT  697

seq1  ACTGTGGCCTGGTTAGTCTATGTCGCTTGCAGAACTGACAACAGTATGGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCCTGGTTAGTCTATGTCGCTTGCAGAACTGACAACAGTATGGA  747

seq1  TGTGATTCTCTTTTGAGTACTGAACGGGAATAAAAGCGAAGATGATATTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCTCTTTTGAGTACTGAACGGGAATAAAAGCGAAGATGATATTG  797

seq1  TCAGGCAAGTGTCCAGGTGTGTTGGAAACACTTCACTCTTCCCTCCTACG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAAGTGTCCAGGTGTGTTGGAAACACTTCACTCTTCCCTCCTACG  847

seq1  TATGAATGACAGTTGATGTAGCAGTGCGTTTAAGCCACACTGCTTTGGTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGACAGTTGATGTAGCAGTGCGTTTAAGCCACACTGCTTTGGTT  897

seq1  CCCAGTAGGTTGGGCTCCCAGCCACCCACCCACAGGATCTCTTTGGAGTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAGGTTGGGCTCCCAGCCACCCACCCACAGGATCTCTTTGGAGTC  947

seq1  TCGAATGAAAGACACACCCACACATGTCAGTTAATTTATGATATGCCATG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATGAAAGACACACCCACACATGTCAGTTAATTTATGATATGCCATG  997

seq1  GCTAGCTCAAAGGGTGGGCACTCCTGAACCTTCCCCTGCTAGCAAACGCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTCAAAGGGTGGGCACTCCTGAACCTTCCCCTGCTAGCAAACGCT  1047

seq1  CCCCTTCGGCACTCCTGAGATTCCTAAACCTTCCTCTGCTACCCAGGGCC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCGGCACTCCTGAGATTCCTAAACCTTCCTCTGCTACCCAGGGCC  1097

seq1  CAATGGGGAAGTGGCCAGTGACCCC  1114
      |||||||||||||||||||||||||
seq2  CAATGGGGAAGTGGCCAGTGACCCC  1122