BAC Information

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BAC

Clone NameB6Ng01-162N17
Chromosome13 (Build37)
Map Location 111,141,751 - 111,288,873
singlet/doubletdoublet
Overlap gene9830130M13Rik, Plk2
Upstream genePde4d, LOC100040577, Rab3c, EG432803
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162N17.bB6Ng01-162N17.g
ACCDH955589DH955590
length1,1871,097
definitionDH955589|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N17, 5' end.DH955590|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,141,751 - 111,142,916)(111,287,765 - 111,288,873)
sequence
gaattcctgcctggtgtttgggggctcttattagatagtcttacacaaag
agctataggcaactaaggcattgatagtgggggtctagctggggaaggaa
tgtttttcagtttaacagagcgagtgtaatatacataattgaacaggtac
tgttcacacacacacacacacacacaaacacacacatgctgtcatgcaaa
ttcacatactcacagacacaagcatatacatatgcacatgtacacacaca
tacacatacagacatgtgcatgcacatacatatacactcacatgtatgca
cacacacacacactcacacacatgcacacacacactcatatggaggtaga
tacctcaatggggcaccatatgcctcagcacatagaggtggtaactgcag
atatttataaattcggaactaagatctgaatttcagaatccagcagagct
ggttcctagaactcagattggctcttgtctcctgatgataccctgggagg
acctgagagatggtcctctggttctaaggaacccctaatagaggtcccct
aaggagcctctaatagagggataaggctaggagaaactgccaacagttgg
agatgctcgagtcagtcgcatgcttgcattttgttctgcagagaggacaa
gaaggaaaaaatttctttggacttctgttctatgaaaatgtcctgtcaac
aaagctcagtaaaaatttacctggcagaagtagcagtcagctgggtacct
ggcaaagtagttcagagcatcctaaaaaaaggcagtgagtagagactcat
tataaacatagtatttatccactgtcttttctttgtgtaaaaaatacaca
ttcaggatttgtctccttgtctctccctccttccctttcctctctcatct
ctccctctgttctctctgtctctctctctgactctctctctctttctctc
tctctttctctctctctcctttccttctttgcttacaagttcctctcctt
acctcaacagctgcccagttgtaataacacattacacaaaacacacacag
gaaaacatttcaacaaaaaattctattagatagaatttagaaaatagtaa
aatttattagttttttttttttaaaagaaaaaaatcttaccttgaacaaa
ctgcaaggattcatgtcttttttcaaattaaaccaga
gaattcagctgccagatgaactgcctaccctagtccagagcagggaataa
gtcaggaggaagaaaaagtcagccatgtccacgtgcaaaggggaaaacag
gtggacagacaggctgttaaatgagctatggcgatagtgggggtactgaa
ccaactcagagtcctcaatcgttgttgtacatgccaggtatcatatgaga
ggttggtatgggaccacaccatctcagtgttaggtgaccatctctttaga
gggtccagcccagagagctgtacccattcctccatctggtatacctatca
agttgttggcccactttctctgatatgatgtaatgtacccatgtgcccca
ctcagtttcaacttactctttctagacccaagactatggaatgttatcaa
tctatactagatggaaggcacttaacacatggtgcagtttctgtgcctac
cccggagctatagttttcctactccctcaaaatgaagtcaaaggggctgc
ttgtaaaatggagtctcctaggacaaggtcgaacttgaaaagtagctgtt
tatacaacagagtaagtaactctgagtagggcaaaaccttatctcagtgg
gactctgatgaactataaagaacagcctttcttcattgattaataattac
tgtaaataaactagagggtaactgaagtttgaaaattacttaatatgtta
tcatttgaatcaatatatgttttcattacaaaaatctgaatgtaatctaa
agtaaagggattttgttttgtagagcaaatgttacaatgtttgcatattc
tgtcgacttggtcagatgacttactttctcgacctttaagaaattagcta
gtttttaaatttttctacattccactgcaagagcctggacacaagaatgg
aatgcattgtcatagctctctgtaaaagtgaatccatttgtctccagccg
taatgagccagttttcagagaggcctttgaactcgctattgcaagttgaa
acatttacaggctgttaaaaagatcttgaactctggtggagtatgaaccc
cagtcccacaatcatgaaggagttcagtttgaagttccagcaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111141751_111142916
seq2: B6Ng01-162N17.b_47_1233

seq1  GAATTCCTGCCTGGTGTTTGGGGGCTCTTATTAGATAGTCTTACACAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCTGGTGTTTGGGGGCTCTTATTAGATAGTCTTACACAAAG  50

seq1  AGCTATAGGCAACTAAGGCATTGATAGTGGGGGTCTAGCTGGGGAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGGCAACTAAGGCATTGATAGTGGGGGTCTAGCTGGGGAAGGAA  100

seq1  TGTTTTTCAGTTTAACAGAGCGAGTGTAATATACATAATTGAACAGGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCAGTTTAACAGAGCGAGTGTAATATACATAATTGAACAGGTAC  150

seq1  TGTTCACACACACACACACACACACAAACACACACATGCTGTCATGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACACACACACACACACACACAAACACACACATGCTGTCATGCAAA  200

seq1  TTCACATACTCACAGACACAAGCATATACATATGCACATGTACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATACTCACAGACACAAGCATATACATATGCACATGTACACACACA  250

seq1  TACACATACAGACATGTGCATGCACATACATATACACTCACATGTATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATACAGACATGTGCATGCACATACATATACACTCACATGTATGCA  300

seq1  CACACACACACACTCACACACATGCACACACACACTCATATGGAGGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTCACACACATGCACACACACACTCATATGGAGGTAGA  350

seq1  TACCTCAATGGGGCACCATATGCCTCAGCACATAGAGGTGGTAACTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAATGGGGCACCATATGCCTCAGCACATAGAGGTGGTAACTGCAG  400

seq1  ATATTTATAAATTCGGAACTAAGATCTGAATTTCAGAATCCAGCAGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAAATTCGGAACTAAGATCTGAATTTCAGAATCCAGCAGAGCT  450

seq1  GGTTCCTAGAACTCAGATTGGCTCTTGTCTCCTGATGATACCCTGGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTAGAACTCAGATTGGCTCTTGTCTCCTGATGATACCCTGGGAGG  500

seq1  ACCTGAGAGATGGTCCTCTGGTTCTAAGGAACCCCTAATAGAGGTCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGAGATGGTCCTCTGGTTCTAAGGAACCCCTAATAGAGGTCCCCT  550

seq1  AAGGAGCCTCTAATAGAGGGATAAGGCTAGGAGAAACTGCCAACAGTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCTCTAATAGAGGGATAAGGCTAGGAGAAACTGCCAACAGTTGG  600

seq1  AGATGCTCGAGTCAGTCGCATGCTTGCATTTTGTTCTGCAGAGAGGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCGAGTCAGTCGCATGCTTGCATTTTGTTCTGCAGAGAGGACAA  650

seq1  GAAGGAAAAAATTTCTTTGGACTTCTGTTCTATGAAAATGTCCTGTCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAAATTTCTTTGGACTTCTGTTCTATGAAAATGTCCTGTCAAC  700

seq1  AAAGCTCAGTAAAAATTTACCTGGCAGAAGTAGCAGTCAGCTGGGTACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCAGTAAAAATTTACCTGGCAGAAGTAGCAGTCAGCTGGGTACCT  750

seq1  GGCAAAGTAGTTCAGAGCATCCTAAAAAAAGGCAGTGAGTAGAGACTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTAGTTCAGAGCATCCTAAAAAAAGGCAGTGAGTAGAGACTCAT  800

seq1  TATAAACATAGTATTTATCCACTGTCTTTTCTTTGTGTAAAAAATACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACATAGTATTTATCCACTGTCTTTTCTTTGTGTAAAAAATACACA  850

seq1  TTCAGGATTTGTCTCCTTGTCTCTCCCTCCTTCCC-TTCCTCTCTCATCT  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCAGGATTTGTCTCCTTGTCTCTCCCTCCTTCCCTTTCCTCTCTCATCT  900

seq1  CTCCCTCCTGCTCTCTCTGTCTCTCTCTCTGACTCTCTCTCTCTTTCTCT  949
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCCCT-CTGTTCTCTCTGTCTCTCTCTCTGACTCTCTCTCTCTTTCTCT  949

seq1  CTCTCTTTCTCTCTCTCTCCTTTCCTTCTTTGCTTAC-AGTTCCTCTCCT  998
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCTCTTTCTCTCTCTCTCCTTTCCTTCTTTGCTTACAAGTTCCTCTCCT  999

seq1  TACCTC-ACAGCTGCCCAG-TGTAATAACACA-TACAC-AAACACACACA  1044
      |||||| |||||||||||| |||||||||||| ||||| |||||||||||
seq2  TACCTCAACAGCTGCCCAGTTGTAATAACACATTACACAAAACACACACA  1049

seq1  -GAAAACA-TTCAAC-AAAAATTC-ATTAGATAG-ATTTAG-AAATAGT-  1087
       ||||||| |||||| |||||||| ||||||||| |||||| ||||||| 
seq2  GGAAAACATTTCAACAAAAAATTCTATTAGATAGAATTTAGAAAATAGTA  1099

seq1  AAATTTATTAG--TTTTTTTTTTAAAAGAAAAAAATCT--ACTTG-ACAA  1132
      |||||||||||  |||||||||||||||||||||||||   |||| ||||
seq2  AAATTTATTAGTTTTTTTTTTTTAAAAGAAAAAAATCTTACCTTGAACAA  1149

seq1  ACTGCAA-GATTCATGTC-TTTTTCAA--TTAACCAGA  1166
      ||||||| |||||||||| ||||||||  | |||||||
seq2  ACTGCAAGGATTCATGTCTTTTTTCAAATTAAACCAGA  1187

seq1: chr13_111287765_111288873
seq2: B6Ng01-162N17.g_70_1166 (reverse)

seq1  TCCCTTGCTGAACTTTCAACCTGAACTTCCCTCATGATTTGTGGGACTGG  50
      |||||||||| |  ||||| |||||| ||| |||||| ||||||||||||
seq2  TCCCTTGCTGGAACTTCAAACTGAAC-TCCTTCATGA-TTGTGGGACTGG  48

seq1  GGTTTCTACT-CACCAGAAGTTCAAAAGATCTTCTCTAAACCAGCCTGTT  99
      ||||  |||| |||||| |||||  |||||||| | |||  |||||||| 
seq2  GGTTCATACTCCACCAG-AGTTC--AAGATCTT-TTTAA--CAGCCTGTA  92

seq1  AATGTTTCCACTTGCCATAAGCGAGTTCAAAGGCCTCTCTG-AAACTGGC  148
      |||||||| |||||| || |||||||||||||||||||||| ||||||||
seq2  AATGTTTCAACTTGCAAT-AGCGAGTTCAAAGGCCTCTCTGAAAACTGGC  141

seq1  TCATTACGGCTTGGAAGACAAATGGATTCACTTTTTACAGAGAGCTATGA  198
      |||||||||||  | |||||||||||||||| ||||||||||||||||||
seq2  TCATTACGGCT--GGAGACAAATGGATTCAC-TTTTACAGAGAGCTATGA  188

seq1  CAATGCATTCCCATTCTTGTGTCCAGGCTCTTGCAGTGGAATTGTAGAAA  248
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  CAATGCATT-CCATTCTTGTGTCCAGGCTCTTGCAGTGGAA-TGTAGAAA  236

seq1  AATTTAAAAACTAGCTAATTTCTTAAAGGTCGAGAAAGTAAGTCATCTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAACTAGCTAATTTCTTAAAGGTCGAGAAAGTAAGTCATCTGA  286

seq1  CCAAGTCGACAGAATATGCAAACATTGTAACATTTGCTCTACAAAACAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCGACAGAATATGCAAACATTGTAACATTTGCTCTACAAAACAAA  336

seq1  ATCCCTTTACTTTAGATTACATTCAGATTTTTGTAATGAAAACATATATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTACTTTAGATTACATTCAGATTTTTGTAATGAAAACATATATT  386

seq1  GATTCAAATGATAACATATTAAGTAATTTTCAAACTTCAGTTACCCTCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAATGATAACATATTAAGTAATTTTCAAACTTCAGTTACCCTCTA  436

seq1  GTTTATTTACAGTAATTATTAATCAATGAAGAAAGGCTGTTCTTTATAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTACAGTAATTATTAATCAATGAAGAAAGGCTGTTCTTTATAGT  486

seq1  TCATCAGAGTCCCACTGAGATAAGGTTTTGCCCTACTCAGAGTTACTTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAGTCCCACTGAGATAAGGTTTTGCCCTACTCAGAGTTACTTAC  536

seq1  TCTGTTGTATAAACAGCTACTTTTCAAGTTCGACCTTGTCCTAGGAGACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTATAAACAGCTACTTTTCAAGTTCGACCTTGTCCTAGGAGACT  586

seq1  CCATTTTACAAGCAGCCCCTTTGACTTCATTTTGAGGGAGTAGGAAAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTACAAGCAGCCCCTTTGACTTCATTTTGAGGGAGTAGGAAAACT  636

seq1  ATAGCTCCGGGGTAGGCACAGAAACTGCACCATGTGTTAAGTGCCTTCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCCGGGGTAGGCACAGAAACTGCACCATGTGTTAAGTGCCTTCCA  686

seq1  TCTAGTATAGATTGATAACATTCCATAGTCTTGGGTCTAGAAAGAGTAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTATAGATTGATAACATTCCATAGTCTTGGGTCTAGAAAGAGTAAG  736

seq1  TTGAAACTGAGTGGGGCACATGGGTACATTACATCATATCAGAGAAAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTGAGTGGGGCACATGGGTACATTACATCATATCAGAGAAAGTG  786

seq1  GGCCAACAACTTGATAGGTATACCAGATGGAGGAATGGGTACAGCTCTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACAACTTGATAGGTATACCAGATGGAGGAATGGGTACAGCTCTCT  836

seq1  GGGCTGGACCCTCTAAAGAGATGGTCACCTAACACTGAGATGGTGTGGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGACCCTCTAAAGAGATGGTCACCTAACACTGAGATGGTGTGGTC  886

seq1  CCATACCAACCTCTCATATGATACCTGGCATGTACAACAACGATTGAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCAACCTCTCATATGATACCTGGCATGTACAACAACGATTGAGGA  936

seq1  CTCTGAGTTGGTTCAGTACCCCCACTATCGCCATAGCTCATTTAACAGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTGGTTCAGTACCCCCACTATCGCCATAGCTCATTTAACAGCC  986

seq1  TGTCTGTCCACCTGTTTTCCCCTTTGCACGTGGACATGGCTGACTTTTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCCACCTGTTTTCCCCTTTGCACGTGGACATGGCTGACTTTTTC  1036

seq1  TTCCTCCTGACTTATTCCCTGCTCTGGACTAGGGTAGGCAGTTCATCTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTGACTTATTCCCTGCTCTGGACTAGGGTAGGCAGTTCATCTGG  1086

seq1  CAGCTGAATTC  1109
      |||||||||||
seq2  CAGCTGAATTC  1097