BAC Information

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BAC

Clone NameB6Ng01-163O24
Chromosome13 (Build37)
Map Location 40,861,250 - 41,012,109
singlet/doubletdoublet
Overlap geneEG621629, EG637157, LOC100039105, Gcnt2
Upstream geneA230103O09Rik, Ofcc1, LOC666894, LOC100039048, Tcfap2a
Downstream genePak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163O24.bB6Ng01-163O24.g
ACCDH956398DH956399
length167997
definitionDH956398|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O24, 5' end.DH956399|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,861,250 - 40,861,416)(41,011,123 - 41,012,109)
sequence
taataaaatggacccttggcagtgtgaggcttcccatgacacagtttgaa
attcattctgaaagagagagaaaagaaaagaaaagaaaagaagaggagag
gagaggagaggagaggagaggagaggagaggagaggagaggagaggagag
gagaggataggatagga
gaattctcttagcttacctatgcacccggtggccaaacagctcacagaga
atgcggagggctttggggtgggggtgggggtaaccaaggctggccccatg
actaggtttctaggcagaacgcaccacatctggagacttcagcatctgct
ccagtcaggaaaatgctgggtgcttaagaggctccctccctgccccattt
tgccctcttcgcccatccattgtatattagcagctagcgtgaaccatcaa
gattgatttggaacgctgccaaacagggtcctccgaactcgccaaacaca
atttctttgatttataggggaggaaagctgggatgccctttcatggccac
tcaacagtccacggtgcccacatccagatgtgggaaccggtctactcgat
aactcctaaattcaaccacggaacagggagaaatcccttgcctctgaaaa
caacaggccttccctctgtgagatggcagtaaaaacacctggctgcaact
cctttttcacaaggttgtccgctggattaaatgagagtcctcttgctcac
cccttagaaggaagctggccactggctgagtgtgaattcagaaagcactg
cctttactattctttctcctcttctgaaaaacagcctgctcttctcaccc
tgctaaggaacgtgatcatttgttttccccgctcttttttattttcccag
acagggttttctctgtgtagcttgagctgtcctgtaaactcactctgtag
accaaggctggcttttgaactcagagatccaccttgcctctctctgcctc
cctagtgctgggataaagacttgtggtaggggattaaggaacttgaataa
gactgtctttctagaaaggacttgatctggattcaaagagaaatgtgtaa
ctaacttatcatgtgataattccaacctggggactaaaagtgctctcacc
atttaccaggcctggatttctggtcctttaaattttttgtttgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40861250_40861416
seq2: B6Ng01-163O24.b_51_217

seq1  TAATAAAATGGACCCTTGGCAGTGTGAGGCTTCCCATGACACAGTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATGGACCCTTGGCAGTGTGAGGCTTCCCATGACACAGTTTGAA  50

seq1  ATTCATTCTGAAAGAGAGAGAAAAGAAAAGAAAAGAAAAGAAGAGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCTGAAAGAGAGAGAAAAGAAAAGAAAAGAAAAGAAGAGGAGAG  100

seq1  GAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAG  150

seq1  GAGAGGAGAGGAGAGGA  167
      ||||||| |||| ||||
seq2  GAGAGGATAGGATAGGA  167

seq1: chr13_41011123_41012109
seq2: B6Ng01-163O24.g_68_1064 (reverse)

seq1  CAAACAAACAAAAAATTTAAA-GAACAGAAAT-CAAGCCTGGTAAATGGT  48
      ||||||||||||||||||||| || ||||||| || ||||||||||||||
seq2  CAAACAAACAAAAAATTTAAAGGACCAGAAATCCAGGCCTGGTAAATGGT  50

seq1  GAAGAGCACTTTTAGT-CCCAGGTTGGATTTATCACATGAT-AGTTAG-T  95
      | |||||||||||||| ||||||||||| |||||||||||| |||||| |
seq2  G-AGAGCACTTTTAGTCCCCAGGTTGGAATTATCACATGATAAGTTAGTT  99

seq1  ACACATTTCTCTTTGAATCCAGATCAAGTCCCTTCTAG-AAGACAGTCTT  144
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  ACACATTTCTCTTTGAATCCAGATCAAGTCCTTTCTAGAAAGACAGTCTT  149

seq1  ATTC-AGTTCCTTAATCCCCTACCACAAGTCTTTAATCCCAGCACTAGGG  193
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTCAAGTTCCTTAATCCCCTACCACAAGTCTTT-ATCCCAGCACTAGGG  198

seq1  AGGCAGAGAGAGGC-AGGTGGATCTCTGAGTTC-AAAGCCAGCC-TGGTC  240
      |||||||||||||| |||||||||||||||||| |||||||||| |||||
seq2  AGGCAGAGAGAGGCAAGGTGGATCTCTGAGTTCAAAAGCCAGCCTTGGTC  248

seq1  TACAGAGTGAGTTTACAGGACAGCTCAAGCTACACAGAG-AAACCCTGTC  289
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACAGAGTGAGTTTACAGGACAGCTCAAGCTACACAGAGAAAACCCTGTC  298

seq1  TGGGAAAAT-AAAAAGAGCGGGGAAAACAAATGATCACGTTCCTTAGCAG  338
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAATAAAAAAGAGCGGGGAAAACAAATGATCACGTTCCTTAGCAG  348

seq1  GGTGAGAAGAGCAGGCTGTTTTTCAGAAGAGGAGAAAGAATAGTAAAGGC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAAGAGCAGGCTGTTTTTCAGAAGAGGAGAAAGAATAGTAAAGGC  398

seq1  AGTGCTTTCTGAATTCACACTCAGCCAGTGGCCAGCTTCCTTCTAAGGGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTCTGAATTCACACTCAGCCAGTGGCCAGCTTCCTTCTAAGGGG  448

seq1  TGAGCAAGAGGACTCTCATTTAATCCAGCGGACAACCTTGTGAAAAAGGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGAGGACTCTCATTTAATCCAGCGGACAACCTTGTGAAAAAGGA  498

seq1  GTTGCAGCCAGGTGTTTTTACTGCCATCTCACAGAGGGAAGGCCTGTTGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGCCAGGTGTTTTTACTGCCATCTCACAGAGGGAAGGCCTGTTGT  548

seq1  TTTCAGAGGCAAGGGATTTCTCCCTGTTCCGTGGTTGAATTTAGGAGTTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGGCAAGGGATTTCTCCCTGTTCCGTGGTTGAATTTAGGAGTTA  598

seq1  TCGAGTAGACCGGTTCCCACATCTGGATGTGGGCACCGTGGACTGTTGAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTAGACCGGTTCCCACATCTGGATGTGGGCACCGTGGACTGTTGAG  648

seq1  TGGCCATGAAAGGGCATCCCAGCTTTCCTCCCCTATAAATCAAAGAAATT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGAAAGGGCATCCCAGCTTTCCTCCCCTATAAATCAAAGAAATT  698

seq1  GTGTTTGGCGAGTTCGGAGGACCCTGTTTGGCAGCGTTCCAAATCAATCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGCGAGTTCGGAGGACCCTGTTTGGCAGCGTTCCAAATCAATCT  748

seq1  TGATGGTTCACGCTAGCTGCTAATATACAATGGATGGGCGAAGAGGGCAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTCACGCTAGCTGCTAATATACAATGGATGGGCGAAGAGGGCAA  798

seq1  AATGGGGCAGGGAGGGAGCCTCTTAAGCACCCAGCATTTTCCTGACTGGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGCAGGGAGGGAGCCTCTTAAGCACCCAGCATTTTCCTGACTGGA  848

seq1  GCAGATGCTGAAGTCTCCAGATGTGGTGCGTTCTGCCTAGAAACCTAGTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCTGAAGTCTCCAGATGTGGTGCGTTCTGCCTAGAAACCTAGTC  898

seq1  ATGGGGCCAGCCTTGGTTACCCCCACCCCCACCCCAAAGCCCTCCGCATT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCCAGCCTTGGTTACCCCCACCCCCACCCCAAAGCCCTCCGCATT  948

seq1  CTCTGTGAGCTGTTTGGCCACCGGGTGCATAGGTAAGCTAAGAGAATTC  987
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAGCTGTTTGGCCACCGGGTGCATAGGTAAGCTAAGAGAATTC  997