BAC Information

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BAC

Clone NameB6Ng01-164J21
Chromosome13 (Build37)
Map Location 111,382,506 - 111,536,636
singlet/doubletdoublet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164J21.bB6Ng01-164J21.g
ACCDH956895DH956896
length1,068920
definitionDH956895|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J21, 5' end.DH956896|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,535,554 - 111,536,636)(111,382,506 - 111,383,279)
sequence
gaattcatgtggaaatcccattcctaagcttttgaatgaaggtgagcatt
ggcgagctacttggcatccaagaacgaaagcaggctctggaaagctgccc
tttatcctctaccacgttagaatatagcaagaagacacagtgtggaaggc
ggaagccaagctgtcttcagtcattatttacaccagtgccttcatctcta
tggcattaactactttaaaactctttaagaaataaatgccatgatgttat
agtatctttgctacataacaccctgaataaacttaagtaagcattatttt
ctctaaaacaaagaaacatcccaaataaaagatgtaagccattttatagt
tcataaatcttaggtagatagatatttgcttattaaaattttctgatgaa
aaccatgcctctaagatagacatttatattgcatagacatgtaataaaat
cccatgctctttcttgttgaaacctcttactgaagaatgagatacggggt
gaacatggaagaaaagtgttgactgataaggctagttagtgttattgctg
atagctttttcagtggaatcaaaatgggtctagctggtttgtggtaaagt
attagaaatgagaggaggaacgttagctattagatgccatatttgttagg
actttgtccacactgtttgtgcacagttgatttgttgctatttctgccag
cactagtttcttttttctttccatcccttgacccaagaaatataagcctc
tccagtgtttgagggaagtagtctatactgctgtcccagaaaacatcatt
gggatacacaaagcctgatatacccttatgattcagtcttccccagatgt
ctataatgaccacaggtgttaggattatctatctatctatctatctatct
atctatcatctatcatcatctatcatctatcattaatagattattgagat
atagctcaggaactgttgccagtctttctcagactatagatgacactccc
caaagtcaagtcatatggaagaatgatgaagctaatggggtgagatgtgt
tgagccttgttgatcatt
gaattctatgaggagcttcacagatctaaaggaacaaaggcacttgcagt
aatgaaccagcttatcagaaagatacaaaggcaagcagagttcaagttca
acctgagatactagaatccatgtccaggtgtggtagaaatgataatttca
gggcagggtgccatcctgctgtcttatctgtgtttcacagaggcaggcag
atctctgaatttttttgcaatgttaaaaacaaacaaacaaaacgaaacaa
caacaacaagggcttgctgtctgtgaagagtcaaagggctaggtgatggg
atgctgattccaggataaccaaaaggggtcctcgagtaaatgactggatt
gatatgtaaaatacaagactggacctgtgatctgcaagagatgagagttc
cagagaaacttttcaggataccaagagcgaactgtttggagaactttctt
gggcagaaaatagagagctgcctggagatctctggagacaaagaacacag
agaaagcaatctggagagctgccttgagcagatcacaggccaccagcttg
gatccatgacttgacgttcaggcgtttatttttcttgctctcagccatct
tctctcagttccatctctccaagcagaggctggtccttgacacatttctg
tttctagccacattttaagtatgagctttacttaaaattagaacattatt
aatttaacaatcattagaatgactgttagtgttggggagaatggaaggaa
gagaaatggagaaggattaaagtgttttctgtcctctccaaagactggta
aacaaattttaagctatagtactattatacatatagaaaaaagattgtta
ctatttaccctagggctggcagacatcaactattcaatttctcttcactg
ctgctctctctttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111535554_111536636
seq2: B6Ng01-164J21.b_43_1110 (reverse)

seq1  AATGATCAACAAGCCTCAACACATCTTCACCCCATTTTAGCCTCCAATCA  50
      ||||||||||||| ||||||||||| ||||||||  ||||| ||  ||| 
seq2  AATGATCAACAAGGCTCAACACATC-TCACCCCA--TTAGCTTC--ATC-  44

seq1  ATTCTTCCATATGACTTGACTTTGGGGAGTGTCATCTTATAGTTCTGAG-  99
      |||||||||||||||||||||||||||||||||||| ||||| |||||| 
seq2  ATTCTTCCATATGACTTGACTTTGGGGAGTGTCATC-TATAG-TCTGAGA  92

seq1  AAGACTGGCAACAGTTCCTTGAGCTATATCTCAATAATCTATTTAAATAG  149
      |||||||||||||||||| ||||||||||||||||||||||||  ||| |
seq2  AAGACTGGCAACAGTTCC-TGAGCTATATCTCAATAATCTATT--AAT-G  138

seq1  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  199
      |||||| ||||||| ||| ||||||| |||||||||||||||||||||||
seq2  ATAGAT-GATAGAT-GAT-GATAGAT-GATAGATAGATAGATAGATAGAT  184

seq1  AGATAGATAAATCCTAACACCTGTGGTCATTATAGACATCTGGGGAAGAC  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAT-AATCCTAACACCTGTGGTCATTATAGACATCTGGGGAAGAC  233

seq1  TGAATCATAAGGGTATATCAGGCTTTGTGTAT-CCAATGATGTTTTCTGG  298
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAATCATAAGGGTATATCAGGCTTTGTGTATCCCAATGATGTTTTCTGG  283

seq1  GACAGCAGTATAGACTACTTCCCTCAAACACTGGAGAGGCTTATATTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGTATAGACTACTTCCCTCAAACACTGGAGAGGCTTATATTTCT  333

seq1  TGGGTCAAGGGATGGAAAGAAAAAAGAAACTAGTGCTGGCAGAAATAGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAAGGGATGGAAAGAAAAAAGAAACTAGTGCTGGCAGAAATAGCA  383

seq1  ACAAATCAACTGTGCACAAACAGTGTGGACAAAGTCCTAACAAATATGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCAACTGTGCACAAACAGTGTGGACAAAGTCCTAACAAATATGGC  433

seq1  ATCTAATAGCTAACGTTCCTCCTCTCATTTCTAATACTTTACCACAAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATAGCTAACGTTCCTCCTCTCATTTCTAATACTTTACCACAAACC  483

seq1  AGCTAGACCCATTTTGATTCCACTGAAAAAGCTATCAGCAATAACACTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGACCCATTTTGATTCCACTGAAAAAGCTATCAGCAATAACACTAA  533

seq1  CTAGCCTTATCAGTCAACACTTTTCTTCCATGTTCACCCCGTATCTCATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTATCAGTCAACACTTTTCTTCCATGTTCACCCCGTATCTCATT  583

seq1  CTTCAGTAAGAGGTTTCAACAAGAAAGAGCATGGGATTTTATTACATGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTAAGAGGTTTCAACAAGAAAGAGCATGGGATTTTATTACATGTC  633

seq1  TATGCAATATAAATGTCTATCTTAGAGGCATGGTTTTCATCAGAAAATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATATAAATGTCTATCTTAGAGGCATGGTTTTCATCAGAAAATTT  683

seq1  TAATAAGCAAATATCTATCTACCTAAGATTTATGAACTATAAAATGGCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGCAAATATCTATCTACCTAAGATTTATGAACTATAAAATGGCTT  733

seq1  ACATCTTTTATTTGGGATGTTTCTTTGTTTTAGAGAAAATAATGCTTACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTTATTTGGGATGTTTCTTTGTTTTAGAGAAAATAATGCTTACT  783

seq1  TAAGTTTATTCAGGGTGTTATGTAGCAAAGATACTATAACATCATGGCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTATTCAGGGTGTTATGTAGCAAAGATACTATAACATCATGGCAT  833

seq1  TTATTTCTTAAAGAGTTTTAAAGTAGTTAATGCCATAGAGATGAAGGCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTAAAGAGTTTTAAAGTAGTTAATGCCATAGAGATGAAGGCAC  883

seq1  TGGTGTAAATAATGACTGAAGACAGCTTGGCTTCCGCCTTCCACACTGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAAATAATGACTGAAGACAGCTTGGCTTCCGCCTTCCACACTGTG  933

seq1  TCTTCTTGCTATATTCTAACGTGGTAGAGGATAAAGGGCAGCTTTCCAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCTATATTCTAACGTGGTAGAGGATAAAGGGCAGCTTTCCAGA  983

seq1  GCCTGCTTTCGTTCTTGGATGCCAAGTAGCTCGCCAATGCTCACCTTCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTTTCGTTCTTGGATGCCAAGTAGCTCGCCAATGCTCACCTTCAT  1033

seq1  TCAAAAGCTTAGGAATGGGATTTCCACATGAATTC  1083
      |||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCTTAGGAATGGGATTTCCACATGAATTC  1068

seq1: chr13_111382506_111383279
seq2: B6Ng01-164J21.g_209_986

seq1  TAATTTCAGGGCAGGGTGCCATCCTGCTGTCTTATCTGTGTTTCACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAGGGCAGGGTGCCATCCTGCTGTCTTATCTGTGTTTCACAGAG  50

seq1  GCAGGCAGATCTCTGAATTTTTTTGCAATGTTAAAAACAAACAAACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGATCTCTGAATTTTTTTGCAATGTTAAAAACAAACAAACAAAA  100

seq1  CGAAACAACAACAACAAGGGCTTGCTGTCTGTGAAGAGTCAAAGGGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACAACAACAACAAGGGCTTGCTGTCTGTGAAGAGTCAAAGGGCTAG  150

seq1  GTGATGGGATGCTGATTCCAGGATAACCAAAAGGGGTCCTCGAGTAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGATGCTGATTCCAGGATAACCAAAAGGGGTCCTCGAGTAAATG  200

seq1  ACTGGATTGATATGTAAAATACAAGACTGGACCTGTGATCTGCAAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTGATATGTAAAATACAAGACTGGACCTGTGATCTGCAAGAGAT  250

seq1  GAGAGTTCCAGAGAAACTTTTCAGGATACCAAGAGCGAACTGTTTGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCCAGAGAAACTTTTCAGGATACCAAGAGCGAACTGTTTGGAGA  300

seq1  ACTTTCTTGGGCAGAAAATAGAGAGCTGCCTGGAGATCTCTGGAGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGGGCAGAAAATAGAGAGCTGCCTGGAGATCTCTGGAGACAAA  350

seq1  GAACACAGAGAAAGCAATCTGGAGAGCTGCCTTGAGCAGATCACAGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGAGAAAGCAATCTGGAGAGCTGCCTTGAGCAGATCACAGGCCA  400

seq1  CCAGCTTGGATCCATGACTTGACGTTCAGGCGTTTATTTTTCTTGCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGGATCCATGACTTGACGTTCAGGCGTTTATTTTTCTTGCTCTC  450

seq1  AGCCATCTTCTCTCAGTTCCATCTCTCCAAGCAGAGGCTGGTCCTTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTTCTCTCAGTTCCATCTCTCCAAGCAGAGGCTGGTCCTTGACA  500

seq1  CATTTCTGTTTCTAGCCACATTTTAAGTATGAGCTTTACTTAAAATTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGTTTCTAGCCACATTTTAAGTATGAGCTTTACTTAAAATTAGA  550

seq1  ACATTATTAATTTAACAATCATTAGAATGACTGTTAGTGTTGGGGAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTAATTTAACAATCATTAGAATGACTGTTAGTGTTGGGGAGAAT  600

seq1  GGAAGGAAGAGAAATGGAGAAGGATTAAAGGTGTTTCTGTCCTCTCCAAA  650
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  GGAAGGAAGAGAAATGGAGAAGGATTAAAGTGTTTTCTGTCCTCTCCAAA  650

seq1  GACTGGTAAACAAAATTTAAGCTATAGTACTA-TATACATATAGAAAAAA  699
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  GACTGGTAAACAAATTTTAAGCTATAGTACTATTATACATATAGAAAAAA  700

seq1  -ATTGTTACTATTTA-CCTAGGGCTGGCAGACATCAACTATTCAATTTCT  747
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATTGTTACTATTTACCCTAGGGCTGGCAGACATCAACTATTCAATTTCT  750

seq1  C-TCACTGCTGCTCTCTCTTTTTTTTTT  774
      | ||||||||||||||||||||||||||
seq2  CTTCACTGCTGCTCTCTCTTTTTTTTTT  778