BAC Information

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BAC

Clone NameB6Ng01-164L15
Chromosome13 (Build37)
Map Location 66,457,852 - 66,713,211
singlet/doubletdoublet
Overlap geneLOC100041915, 2410141K09Rik, C330014B19Rik
Upstream geneEG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164L15.bB6Ng01-164L15.g
ACCDH956973DH956974
length1,1421,043
definitionDH956973|Mus musculus domesticus DNA, BAC clone: B6Ng01-164L15, 5' end.DH956974|Mus musculus domesticus DNA, BAC clone: B6Ng01-164L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,457,852 - 66,459,017)(66,712,163 - 66,713,211)
sequence
gaattcatagacatagggcactatgatatgataaatattttattcatgaa
agttaataaagattgttttatctctgaatgccatccttgaactagattac
agtcctattgagaaagactgctataaaataaccttgaatttgtatttcca
cagatacataaaaaagcatgacttaaaccatataaaatatataacagatt
ctccttaaaatattttattatttaaatgcattttatgtatcaaacatctt
aataatactgaatattttgagaaccaaataatacatcaaaattttgttca
actttcatattcctgtccttttatactttaaaaatatcattaatgcatat
ttaataatatccatacctgatgatcctatgtctacttttgagtactgcct
gcctctgcctcccgagtgctgggattaaaggtgtgagccaccacgtctgg
ccttaatgtcactttttattttgagatgatgattatctaaatttttcatt
ccatgttaaatttgagaaactttcagatattgtccaattgttatgctcat
ttttttcataatttttgttgatgtaattgagatttaagctgtacattcag
attattttatactggtatattccttgtcctttcagtgtatcatggctatc
aattatttgtattcattttttttctagcagtttgctaaagttgctgtcac
ttgtaagtatatatttttggggaagattgattattttacaacgtttaaat
gctgtagataacatacaatatttagtagagaaagtaacaaatacagctcc
tgggccctctgggccaaccaaagctgccctgagcagactgctatgccatg
tggacctccactctcccatcaccctctcctcaaacctagtcagactcttg
aaccataaggtgccgaaacatacagcctaatgatatccatcagaatcctg
ccacaccaggaaaattgaagttcaccctcttcccatatctcctacacaga
acatctagggattaaaccatccagtttgctaaagcctcaaaaaacaaatc
aacaaagctttgcaatatgaccttccaagcaatctacccactacagcagc
ttgatactagcaaactgaatacaggaaatactactactatct
gaattctatgagtttaaggctagcctggtctacagagcttccaggacagc
cagggctctgttacacagaaaagtactatctaaaaaaaaaaaaaagatgg
aaaatatatgtgtcttagggttattattgctgtgaagaaacaccatgacc
caaagcaccttggagaagaaagggtttatttcattaaagttccttaaaag
agttcaccatcaaaagcagtgagggcaggaactcaagtagggcaggaagc
tggaggcagcagctgatgcagaggtggtggaggggcctggttcactgcag
caatttctttggctttttcagtctgctttctaatagaacccaggacttga
tccttttatattaagattagatacaaatgttgagttgcatattgattttt
agtcaaataataacatcctcaaggcatttccatattggcatgtgtactgg
ctagttttgtgtcaacttgacacagctggagttatcacagagaaaggagc
ttcagttgaggaaatgcctccatgagatccaactgtaaggcattttctca
attagtgatcaagggggaaaggccccttgtgggtggtgtcaactctgggc
tggtagtcttggttctataagaaagcaggctgagcaagccaggtgaggca
agccagtaaagaacatccctccatggcctctgcatcagctcctgcttcct
gacctgcttgagttccagtcctgacttccttggtgatgaacagcagtatg
gaagtgtaagccaataaaccctttcctccccaacttgcttcttggtcatg
atgtttgtgcaggaatagaaaccctgactaagacagcatgtaaagccttt
ataattttaaactatttcattgatgtagaattcatatatcatagatttca
ctttaaaaaataggacccagggctggagagatggctcagtggttagagac
ccgactgctctccgaagattctgagttcaagtcccacatcacatggtggc
tcaaatcatacatgtggagatctgacgaacctcatcggtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66457852_66459017
seq2: B6Ng01-164L15.b_48_1189

seq1  GAATTCATAGACATAGGGCACTATGATATGATAAATATTTTATTCATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGACATAGGGCACTATGATATGATAAATATTTTATTCATGAA  50

seq1  AGTTAATAAAGATTGTTTTATCTCTGAATGCCATCCTTGAACTAGATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAAAGATTGTTTTATCTCTGAATGCCATCCTTGAACTAGATTAC  100

seq1  AGTCCTATTGAGAAAGACTGCTATAAAATAACCTTGAATTTGTATTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTATTGAGAAAGACTGCTATAAAATAACCTTGAATTTGTATTTCCA  150

seq1  CAGATACATAAAAAAGCATGACTTAAACCATATAAAATATATAACAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACATAAAAAAGCATGACTTAAACCATATAAAATATATAACAGATT  200

seq1  CTCCTTAAAATATTTTATTATTTAAATGCATTTTATGTATCAAACATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAAATATTTTATTATTTAAATGCATTTTATGTATCAAACATCTT  250

seq1  AATAATACTGAATATTTTGAGAACCAAATAATACATCAAAATTTTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACTGAATATTTTGAGAACCAAATAATACATCAAAATTTTGTTCA  300

seq1  ACTTTCATATTCCTGTCCTTTTATACTTTAAAAATATCATTAATGCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATATTCCTGTCCTTTTATACTTTAAAAATATCATTAATGCATAT  350

seq1  TTAATAATATCCATACCTGATGATCCTATGTCTACTTTTGAGTACTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATATCCATACCTGATGATCCTATGTCTACTTTTGAGTACTGCCT  400

seq1  GCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGAGCCACCACGTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGAGCCACCACGTCTGG  450

seq1  CCTTAATGTCACTTTTTATTTTGAGATGATGATTATCTAAATTTTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATGTCACTTTTTATTTTGAGATGATGATTATCTAAATTTTTCATT  500

seq1  CCATGTTAAATTTGAGAAACTTTCAGATATTGTCCAATTGTTATGCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTAAATTTGAGAAACTTTCAGATATTGTCCAATTGTTATGCTCAT  550

seq1  TTTTTTCATAATTTTTGTTGATGTAATTGAGATTTAAGCTGTACATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCATAATTTTTGTTGATGTAATTGAGATTTAAGCTGTACATTCAG  600

seq1  ATTATTTTATACTGGTATATTCCTTGTCCTTTCAGTGTATCATGGCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTATACTGGTATATTCCTTGTCCTTTCAGTGTATCATGGCTATC  650

seq1  AATTATTTGTATTCATTTTTTTTCTAGCAGTTTGCTAAAGTTGCTGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTGTATTCATTTTTTTTCTAGCAGTTTGCTAAAGTTGCTGTCAC  700

seq1  TTGTAAGTATATATTTTTGGGGAAGATTGATTATTTTACAACGTTTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTATATATTTTTGGGGAAGATTGATTATTTTACAACGTTTAAAT  750

seq1  GCTGTAGATAACATACAATATGTAGTAGAGAAAGTAACAAATACAGCTCC  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTGTAGATAACATACAATATTTAGTAGAGAAAGTAACAAATACAGCTCC  800

seq1  TGGGCCCTCTGGGCCAACCAAAGCTGCCCTGAGCAGACTGCTATGCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCTCTGGGCCAACCAAAGCTGCCCTGAGCAGACTGCTATGCCATG  850

seq1  TGGACCTCCACTCTCCCATCA-CCTCTCCTCAAACCTAGTCAGACTCCTG  899
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  TGGACCTCCACTCTCCCATCACCCTCTCCTCAAACCTAGTCAGACTCTTG  900

seq1  AACCATAAGGTGCCGAAACATACAGCCTAATGATATCCATCAGAATCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAGGTGCCGAAACATACAGCCTAATGATATCCATCAGAATCCTG  950

seq1  CCACACCAGGAAAATTGAAGTTCACCCTCTTCCCAATATCTCCTACAACA  999
      |||||||||||||||||||||||||||||||||| ||||||||||||   
seq2  CCACACCAGGAAAATTGAAGTTCACCCTCTTCCC-ATATCTCCTACA--C  997

seq1  AGAACATCTAGGGATTAAAACCATCCAGTTTGCTAAAGGCCCTCAAAAAA  1049
      |||||||||||||||| |||||||||||||||||||||  ||||||||||
seq2  AGAACATCTAGGGATT-AAACCATCCAGTTTGCTAAAG--CCTCAAAAAA  1044

seq1  ACAAAATCAACAAAAGCCTTGGCAATATGACACTTCCAAAGCAAATCTAC  1099
         |||||||||||   ||| |||||||||| ||||| |||| |||||| 
seq2  --CAAATCAACAAA--GCTTTGCAATATGAC-CTTCC-AAGC-AATCTA-  1086

seq1  CCCACTACAGCAAGCTCAGATAACCTAGCAAAACTGAAATACAAGAAAAT  1149
      ||||||||||| ||||  ||||  ||||| |||||| |||||| ||||  
seq2  CCCACTACAGC-AGCT-TGATA--CTAGC-AAACTG-AATACAGGAAA--  1128

seq1  TACCTTAACTACTATCT  1166
      |||    ||||||||||
seq2  TAC---TACTACTATCT  1142

seq1: chr13_66712163_66713211
seq2: B6Ng01-164L15.g_70_1109 (reverse)

seq1  ACACACCAGAGGAGG-TCGTCAGATCTCACTATGTATGGTTTTGAGCCAC  49
      ||||||| || |||| ||||||||||||   |||||| | ||||||||||
seq2  ACACACC-GATGAGGTTCGTCAGATCTCCACATGTAT-GATTTGAGCCAC  48

seq1  CATGTGGTTGCTGGGACTTGAACTCAGAATCTTCGGGAGAGCAGTCAGGT  99
      |||||| |   ||||||||||||||||||||||| ||||||||||| |||
seq2  CATGTGAT--GTGGGACTTGAACTCAGAATCTTC-GGAGAGCAGTCGGGT  95

seq1  CTCTTAACCGCTGAGCCATCTCTCCAGCCCTGGGTCCTATTTTTTAAAGG  149
      ||| ||||| |||||||||||||||||||||||||||||||||||||| |
seq2  CTC-TAACCACTGAGCCATCTCTCCAGCCCTGGGTCCTATTTTTTAAA-G  143

seq1  TGAATTCTATGATATATGAATTCTACATCAATGAAATAGTTT-CAATTAT  198
      |||| |||||||||||||||||||||||||||||||||||||  ||||||
seq2  TGAAATCTATGATATATGAATTCTACATCAATGAAATAGTTTAAAATTAT  193

seq1  AAAGGCTTTACATGCTGTCTTAGTCAGGGTTTCTATTCCTGTACAAACAT  248
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAGGCTTTACATGCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACAT  243

seq1  CATGACCAAGAAGC-AGTTGGGGAGGAAAGGGTTTATTTGGCTTACACTT  297
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTA-TTGGCTTACACTT  292

seq1  CCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGG  347
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCATACTGCTGTTCATCACC-AAGGAAGTCAGGACTGGAACTCAAGCAGG  341

seq1  TCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGG  391

seq1  CTTGCCTCACCTGGCTTGCTCAGCCTGCTTTCTTATAGAACCAAGACTAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCACCTGGCTTGCTCAGCCTGCTTTCTTATAGAACCAAGACTAC  441

seq1  CAGCCCAGAGATGGCACCACCCACAAGGGGCCTTTCCCCCTTGATCACTA  497
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGAGTTGACACCACCCACAAGGGGCCTTTCCCCCTTGATCACTA  491

seq1  ATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTG  541

seq1  AAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACT  591

seq1  AGCCAGTACACATGCCAATATGGAAATGCCTTGAGGATGTTATTATTTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTACACATGCCAATATGGAAATGCCTTGAGGATGTTATTATTTGA  641

seq1  CTAAAAATCAATATGCGACTCAACATTTGTATCTAATCTTAATATAAAAG  697
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTAAAAATCAATATGCAACTCAACATTTGTATCTAATCTTAATATAAAAG  691

seq1  GATCAAGTCCTGGGTTCTATAAGAAAGCAGACTGAAAAAGCCAAAGAAAT  747
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GATCAAGTCCTGGGTTCTATTAGAAAGCAGACTGAAAAAGCCAAAGAAAT  741

seq1  CGCTGCAGTGAACCAGGCTCCTCCACCACCTCTGCATCAGCTGCTGCCTC  797
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCTGCAGTGAACCAGGCCCCTCCACCACCTCTGCATCAGCTGCTGCCTC  791

seq1  CAGCTTCCTGCCCTATTTGAGTTCCTGCCCTCACTGGTTTTGATGGTGAA  847
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  CAGCTTCCTGCCCTACTTGAGTTCCTGCCCTCACTGCTTTTGATGGTGAA  841

seq1  CTCTTTTAAGGAACTTTAATGAAATAAACCCTTTCTTCTCCAAGGTGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAAGGAACTTTAATGAAATAAACCCTTTCTTCTCCAAGGTGCTT  891

seq1  TTGGTCATGGTGTTTCTTCACAGCAATAGTAACTCTAAGACACATATATT  947
      | |||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  TGGGTCATGGTGTTTCTTCACAGCAATAATAACCCTAAGACACATATATT  941

seq1  TTCCATCTTTTTTTTTTTTTTTTTAGATAGTACTTTTCTGTGTAACAGAG  997
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATC---TTTTTTTTTTTTTTAGATAGTACTTTTCTGTGTAACAGAG  988

seq1  CCCTGGCAGTCCTGGAAGCTCTGTAGACCAGGCTAGCCTTAAACTCATAG  1047
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAAGCTCTGTAGACCAGGCTAGCCTTAAACTCATAG  1038

seq1  AA  1049
      ||
seq2  AA  1040