BAC Information

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BAC

Clone NameB6Ng01-164O15
Chromosome13 (Build37)
Map Location 49,573,927 - 49,783,186
singlet/doubletdoublet
Overlap geneCenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars
Upstream geneZfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk
Downstream geneLOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164O15.bB6Ng01-164O15.g
ACCDH957115DH957116
length1,0781,131
definitionDH957115|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O15, 5' end.DH957116|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,573,927 - 49,575,017)(49,782,055 - 49,783,186)
sequence
gaattcaggacaaattaatttgaaatgatgtagcagaacaccttatgtgt
gtgtgtgtgctggagagtgtgtgctcgagagtgtgtgtgtgtggtcacag
aaggctttggcagctttctttttttctgatagagatcttccccacctgtt
cttggggcccagcttacccgtgcattaatgccttacaggtagcccctgcc
ccgcaggcaacagagttcagactccctgcctctgaaactgaaaagttggc
acagggagatgatataggtactaagtgactggtaggagggttgctccgtc
ctcagtgaccaggtatcatctctacagctttagctctaccatgagctaca
gggaacccatcaaattccttttctacataagctaatataaaccgattgcc
taccatctgtgttgctctgaaaaagtcttactaaaaaacacaaatgaaga
aaccacttgagtaaactgacagtgactttggcaaactatcagccaacagt
tatctaccccatgaatcattaattccaaacccaaactgtacccgtcctca
cacactcacagcaatactattgattacagctggaactgagcgggcctagg
aataggatggtagatcctctgtggagtccatacagtgattcgatgaaaga
tttgtgatcatatacacatcactcccacagcctgttgtacccatgaaggt
ctacatgaggctgggctctccaccagccagcagagtacttgtctagaagc
aaggactgggaagaggacagggtttctggagacggttccacttcctgatt
tgggtggtggttataatacaaactccttttgtgaagaattattaaactgt
atttatgatatatgccctcttctttgtcttattttaccaaaattaaaaag
acaaaagacagcatgtgtgacttcttgatgaaaaagcagacaatgagtaa
aggaatttataacgacaggctgtgatgtgagccaagaacttcttgttctc
acagctgccgttccttgtcagctttcagtgctgaggtctgggaccttggt
taaaggaccagaaagcatctgcgctgtg
gaattcactgatttgacattagtagtctttcctagcaatagagactaagg
caggaaatactgcaggacccagccacacagggcagagatgattgtaaatg
caagaaagaaagcaaagcggtaaataatctccattcctacgacttctgac
aaccaggaactcacccattcctgtccagattcctactgtagggaaaggca
cagactctgagaacttacaggtgaacgaagggtgggcattaagggagtgc
agcacaagagaaggctgtgtgtaaggagcctgtctttactgcagaaactc
acgtactttggcctgagttttgactgtttgaggcattcctggaaacagtt
atgtttggaccagaactccaagattttttcttcttcagcaggaaaactga
tgttttctggaacttgttgaaccattctgttgctagaaatcaaatttgca
acagtcacagaaattcttaatttagaaatagcaggctaacaaattattaa
agtgcatatacacatgactgtccacactgtgtgtgttaaagtgaaagttt
tattggctattgatgtatataatacacagtcagctgaataggatttttag
gatatttaaaggcatgtaaccatcaccacttcagaatattttcaattttc
cccacaaccatgagcaagcacattctttctagttcagccatggcaactaa
tcttgttaactctgtaaccatttgtctacatttcatatgttcatgctgga
tggtggcgacacacgcctttaatcttagcacttgaaaggtggaggcaggt
ggacctctgggccaacctgttctacacagtgagtcctaggacagccaggg
ctacacagagaagccctgtcttaaacaacaaacaaacaaacaaacaaaca
aacaaacaagacctaccacctcaccaccccttcatcagcaccaaaccctg
gaattttcacatgaattgcctacatgtggttctgctaagttttgaagatc
agtcatgctgtacaacatactcaaagtccaatcaggctcggccactaatt
atcagctcatcagttttcatatggaattggacttgccttttggctaagtt
tcgaaaggtttatatgttctacagagacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_49573927_49575017
seq2: B6Ng01-164O15.b_47_1124

seq1  GAATTCAGGACAAATTAATTTGAAATGATGTAGCAGAACACCTTATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACAAATTAATTTGAAATGATGTAGCAGAACACCTTATGTGT  50

seq1  GTGTGTGTGCTGGAGAGTGTGTGCTCGAGAGTGTGTGTGTGTGGTCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCTGGAGAGTGTGTGCTCGAGAGTGTGTGTGTGTGGTCACAG  100

seq1  AAGGCTTTGGCAGCTTTCTTTTTTTCTGATAGAGATCTTCCCCACCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTGGCAGCTTTCTTTTTTTCTGATAGAGATCTTCCCCACCTGTT  150

seq1  CTTGGGGCCCAGCTTACCCGTGCATTAATGCCTTACAGGTAGCCCCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGCCCAGCTTACCCGTGCATTAATGCCTTACAGGTAGCCCCTGCC  200

seq1  CCGCAGGCAACAGAGTTCAGACTCCCTGCCTCTGAAACTGAAAAGTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGGCAACAGAGTTCAGACTCCCTGCCTCTGAAACTGAAAAGTTGGC  250

seq1  ACAGGGAGATGATATAGGTACTAAGTGACTGGTAGGAGGGTTGCTCCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGATGATATAGGTACTAAGTGACTGGTAGGAGGGTTGCTCCGTC  300

seq1  CTCAGTGACCAGGTATCATCTCTACAGCTTTAGCTCTACCATGAGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGACCAGGTATCATCTCTACAGCTTTAGCTCTACCATGAGCTACA  350

seq1  GGGAACCCATCAAATTCCTTTTCTACATAAGCTAATATAAACCGATTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCATCAAATTCCTTTTCTACATAAGCTAATATAAACCGATTGCC  400

seq1  TACCATCTGTGTTGCTCTGAAAAAGTCTTACTAAAAAACACAAATGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTGTGTTGCTCTGAAAAAGTCTTACTAAAAAACACAAATGAAGA  450

seq1  AACCACTTGAGTAAACTGACAGTGACTTTGGCAAACTATCAGCCAACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTGAGTAAACTGACAGTGACTTTGGCAAACTATCAGCCAACAGT  500

seq1  TATCTACCCCATGAATCATTAATTCCAAACCCAAACTGTACCCGTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACCCCATGAATCATTAATTCCAAACCCAAACTGTACCCGTCCTCA  550

seq1  CACACTCACAGCAATACTATTGATTACAGCTGGAACTGAGCGGGCCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACAGCAATACTATTGATTACAGCTGGAACTGAGCGGGCCTAGG  600

seq1  AATAGGATGGTAGATCCTCTGTGGAGTCCATACAGTGATTCGATGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATGGTAGATCCTCTGTGGAGTCCATACAGTGATTCGATGAAAGA  650

seq1  TTTGTGATCATATACACATCACTCCCACAGCCTGTTGTACCCATGAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATCATATACACATCACTCCCACAGCCTGTTGTACCCATGAAGGT  700

seq1  CTACATGAGGCTGGGCTCTCCACCAGCCAGCAGAGTACTTGTCTAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGAGGCTGGGCTCTCCACCAGCCAGCAGAGTACTTGTCTAGAAGC  750

seq1  AAGGACTGGGAAGAGGACAGGGTTTCTGGAGACGGTTCCACTTCCTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGGGAAGAGGACAGGGTTTCTGGAGACGGTTCCACTTCCTGATT  800

seq1  TGGGTGGTGGTTATAATACAAACTCCTTTTGTGAAGAATTATTAAACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTGGTTATAATACAAACTCCTTTTGTGAAGAATTATTAAACTGT  850

seq1  ATTTATGATATATGCCCTCTTCTTTGTCTTATTTTACCAAAATTAAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGATATATGCCCTCTTCTTTGTCTTATTTTACCAAAATTAAAAAG  900

seq1  ACAAAAGACAGCATGTGTGACTTCTTGATGAAAAAAGCAGACAATGAGTA  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAAAAGACAGCATGTGTGACTTCTTGATG-AAAAAGCAGACAATGAGTA  949

seq1  AAGGAATTTATAACGACAGGCTTGTGATGTGAGCCAAGAACTTCTTGTTC  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGGAATTTATAACGACAGGC-TGTGATGTGAGCCAAGAACTTCTTGTTC  998

seq1  TTCACAGCTGCCGTTCCTTGTCAGCCTTTCAAGGTGCTGAGGGTCTGGGA  1050
       ||||||||||||||||||||||| ||||||  ||||||| |||||||||
seq2  -TCACAGCTGCCGTTCCTTGTCAG-CTTTCA--GTGCTGA-GGTCTGGGA  1043

seq1  CACTGTGTTATAGGAGCAGGCACCACGCCATCTGCGCTGTG  1091
      | ||  |||| |||| |||     |   |||||||||||||
seq2  C-CTTGGTTAAAGGACCAG-----AAAGCATCTGCGCTGTG  1078

seq1: chr13_49782055_49783186
seq2: B6Ng01-164O15.g_70_1200 (reverse)

seq1  CCTGTCCTTGTAGAACATAACAACC-TTCGAAAC-TAGCCAAAAAGGCAA  48
      ||||||  |||||||||||  |||| |||||||| ||||| |||||||||
seq2  CCTGTCTCTGTAGAACATATAAACCTTTCGAAACTTAGCC-AAAAGGCAA  49

seq1  GT-CAATTCAAATATGAAAACTGATGAGCTGATAAATAGTGGCAGAG-CT  96
      || ||||||  |||||||||||||||||||||||| ||||||| ||| ||
seq2  GTCCAATTC-CATATGAAAACTGATGAGCTGATAATTAGTGGCCGAGCCT  98

seq1  GTATGGACTATGAGTATGTTGTACAGCATGACTGATCCTTCAAAACTAAG  146
      |  |||||| |||||||||||||||||||||||||| |||||||||| ||
seq2  GATTGGACTTTGAGTATGTTGTACAGCATGACTGAT-CTTCAAAACTTAG  147

seq1  CAGAACCACATGTAGGCAATTCATGTGAAAATTTCAGGGTTTGGTGCTGA  196
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGAACCACATGTAGGCAATTCATGTGAAAATTCCAGGGTTTGGTGCTGA  197

seq1  TGGAGGGGTGGTGGTGGTGGTAGGTCTTGTTTGTTTGTTTGTTTGTTTGT  246
      || ||||||||| | |||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGTGGT-GAGGTGGTAGGTCTTGTTTGTTTGTTTGTTTGTTTGT  246

seq1  TTGTTTGTTTGTTTAAGACAGGGCTTCTCTGTGTAGCCCTGGCTGTCCTA  296
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTG-TTGTTTAAGACAGGGCTTCTCTGTGTAGCCCTGGCTGTCCTA  295

seq1  GGACTCACTGTGTAGAACAGGTTGGCCCAGAGGTCCACCTGCCTCCACCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCACTGTGTAGAACAGGTTGGCCCAGAGGTCCACCTGCCTCCACCT  345

seq1  TTCAAGTGCTAAGATTAAAGGCGTGTGTCGCCACCATCCAGCATGAACAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGCTAAGATTAAAGGCGTGTGTCGCCACCATCCAGCATGAACAT  395

seq1  ATGAAATGTAGACAAATGGTTACAGAGTTAACAAGATTAGTTGCCATGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGTAGACAAATGGTTACAGAGTTAACAAGATTAGTTGCCATGGC  445

seq1  TGAACTAGAAAGAATGTGCTTGCTCATGGTTGTGGGGAAAATTGAAAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAGAAAGAATGTGCTTGCTCATGGTTGTGGGGAAAATTGAAAATA  495

seq1  TTCTGAAGTGGTGATGGTTACATGCCTTTAAATATCCTAAAAATCCTATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTGGTGATGGTTACATGCCTTTAAATATCCTAAAAATCCTATT  545

seq1  CAGCTGACTGTGTATTATATACATCAATAGCCAATAAAACTTTCACTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACTGTGTATTATATACATCAATAGCCAATAAAACTTTCACTTTA  595

seq1  ACACACACAGTGTGGACAGTCATGTGTATATGCACTTTAATAATTTGTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGTGTGGACAGTCATGTGTATATGCACTTTAATAATTTGTTA  645

seq1  GCCTGCTATTTCTAAATTAAGAATTTCTGTGACTGTTGCAAATTTGATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTATTTCTAAATTAAGAATTTCTGTGACTGTTGCAAATTTGATTT  695

seq1  CTAGCAACAGAATGGTTCAACAAGTTCCAGAAAACATCAGTTTTCCTGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAACAGAATGGTTCAACAAGTTCCAGAAAACATCAGTTTTCCTGCT  745

seq1  GAAGAAGAAAAAATCTTGGAGTTCTGGTCCAAACATAACTGTTTCCAGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAAAAATCTTGGAGTTCTGGTCCAAACATAACTGTTTCCAGGA  795

seq1  ATGCCTCAAACAGTCAAAACTCAGGCCAAAGTACGTGAGTTTCTGCAGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCAAACAGTCAAAACTCAGGCCAAAGTACGTGAGTTTCTGCAGTA  845

seq1  AAGACAGGCTCCTTACACACAGCCTTCTCTTGTGCTGCACTCCCTTAATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCTCCTTACACACAGCCTTCTCTTGTGCTGCACTCCCTTAATG  895

seq1  CCCACCCTTCGTTCACCTGTAAGTTCTCAGAGTCTGTGCCTTTCCCTACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTTCGTTCACCTGTAAGTTCTCAGAGTCTGTGCCTTTCCCTACA  945

seq1  GTAGGAATCTGGACAGGAATGGGTGAGTTCCTGGTTGTCAGAAGTCGTAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATCTGGACAGGAATGGGTGAGTTCCTGGTTGTCAGAAGTCGTAG  995

seq1  GAATGGAGATTATTTACCGCTTTGCTTTCTTTCTTGCATTTACAATCATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAGATTATTTACCGCTTTGCTTTCTTTCTTGCATTTACAATCATC  1045

seq1  TCTGCCCTGTGTGGCTGGGTCCTGCAGTATTTCCTGCCTTAGTCTCTATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTGTGTGGCTGGGTCCTGCAGTATTTCCTGCCTTAGTCTCTATT  1095

seq1  GCTAGGAAAGACTACTAATGTCAAATCAGTGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAAGACTACTAATGTCAAATCAGTGAATTC  1131