BAC Information

Click to search

BAC

Clone NameB6Ng01-165B08
Chromosome13 (Build37)2 (Build37)
Map Location 20,678,980 - 20,680,10541,786,938 - 41,787,101
singlet/doubletsingletsinglet
Overlap geneElmo1
Upstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165B08.bB6Ng01-165B08.g
ACCDH957236DH957237
length1,112978
definitionDH957236|Mus musculus domesticus DNA, BAC clone: B6Ng01-165B08, 5' end.DH957237|Mus musculus domesticus DNA, BAC clone: B6Ng01-165B08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,678,980 - 20,680,105)(41,786,938 - 41,787,101)
sequence
gaattcttcatcttgaaccttaggcttcccatctgcccaacccttctcaa
actgagcaaatatgagagatgaagatgtgccatggagtaagggtgctgct
tccttccctgatgacctcctgcttctcccagctctatgcctcaccatgtt
atcgttctcccatgttgaaagaacaaatcacaaagctagcttggctttga
aatcttcaggaactccctactgtgtgagtgtgaccccctttgtttctacc
cctggactggagaggaaattgttttcagttctccccatgtttaatcttcc
agtgcatctagagaaaagctatgaaagaaaggaagaaagatagaaatgag
agaacagcttttcaatacgacgatatttttagtagtttgtattttctttt
agtctttatcccatgagcgacacagcaacttatctctctgataagggaca
atggatatttaaatataaagtatgtatggccacaatatgaaaagagattt
tctcctgtgaatcctttgcattaagacaatccaaagcacttttgtcttcc
ctgtcccattctccatgtcttcaaagccaaacagtagctgacttttgtag
agaatggatactggagttcatgaaacatttcgcatcttataacaaaggat
ttcctacaatgtacttgtcatttcaactccagcggaagctttaggaaggt
ttacgaattgttttgctaattagattttaaaattcccttcaatgtctcta
ttgcaaatgtaaccaacttccccaagatttcagttatgccctgcagacag
atcagccacagaggcagcaagactagctagtccttggttatgaacttgga
cttgtaagacccgaagtcagtgtttaagataggctcaggatttttaacac
ccacctacaggattcctattcaaaggagttggagagagggccaaaaaggc
agctgagcatagggttgagttgaccagagcaacagcccctctctagtgtg
cacagcaaagactttccacccattatgtgatgagaccctcccaatcactc
aggccacaagctatctcccttgacatacagacataggtgcaaatctgaat
taaccaagaaga
gaattctaatgctttttaagatgtgtgcctgtgggattgcttactcatgt
tacacatattcttagcttttaaatcataaatgttgaattttgctaaggat
tttaagtatggattcatatgatcatgtgttttctgttcgacctgtttaaa
taagcactcacactgcttgcatttttttcaaataaactttgaaatagcct
tgtttccacacaataatctagatttggttgttctatatgattctcttcac
atactgccgaatataattttggcaggaatataattttatatgtctacagt
cttgaatgacattagtctgtgtcttattctgtctgtgttgagtgtaatag
tcacaaacacttgtacagactcgttatttttatattctgaggtttctttc
tttttttattagatattttctttatacacatttcaaatgctatcccaaaa
gttccctataccccccctcccgccctgcttccctacccacacactcccac
ttcttagccctggcattcccctgtactgaggcatataaagtttgcaagac
caaggggcctctcttcccagtgatggccaactaggccatcttctgataca
tatgcagctaaagacatgagctctgggggtactggttagtttatattgtt
gttccacctatggggttgcagacccctgcacctccttggatgctttctct
agtttctccattgggggccctgtgttccatcttatagatgactgtgagca
tccacttctgtatttaccaggcactggcatagcctcatacaagacagcta
caccagggtcccttctgcaaaatcttgctggcatatgcaatagtctctgg
gtttggtggctgattatgggatggatccctgggtggggtagtctctggat
agtctatctttttcgtcttagctccaaactttgtctctgtaactcctttc
atgggttttttgttcctaattctaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20678980_20680105
seq2: B6Ng01-165B08.b_46_1157

seq1  GAATTCTTCATCTTGAACCTTAGGCTTCCCATCTGCCCAACCCTTCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATCTTGAACCTTAGGCTTCCCATCTGCCCAACCCTTCTCAA  50

seq1  ACTGAGCAAATATGAGAGATGAAGATGTGCCATGGAGTAAGGGTGCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAAATATGAGAGATGAAGATGTGCCATGGAGTAAGGGTGCTGCT  100

seq1  TCCTTCCCTGATGACCTCCTGCTTCTCCCAGCTCTATGCCTCACCATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCTGATGACCTCCTGCTTCTCCCAGCTCTATGCCTCACCATGTT  150

seq1  ATCGTTCTCCCATGTTGAAAGAACAAATCACAAAGCTAGCTTGGCTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTCTCCCATGTTGAAAGAACAAATCACAAAGCTAGCTTGGCTTTGA  200

seq1  AATCTTCAGGAACTCCCTACTGTGTGAGTGTGACCCCCTTTGTTTCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAGGAACTCCCTACTGTGTGAGTGTGACCCCCTTTGTTTCTACC  250

seq1  CCTGGACTGGAGAGGAAATTGTTTTCAGTTCTCCCCATGTTTAATCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACTGGAGAGGAAATTGTTTTCAGTTCTCCCCATGTTTAATCTTCC  300

seq1  AGTGCATCTAGAGAAAAGCTATGAAAGAAAGGAAGAAAGATAGAAATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATCTAGAGAAAAGCTATGAAAGAAAGGAAGAAAGATAGAAATGAG  350

seq1  AGAACAGCTTTTCAATACGACGATATTTTTAGTAGTTTGTATTTTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCTTTTCAATACGACGATATTTTTAGTAGTTTGTATTTTCTTTT  400

seq1  AGTCTTTATCCCATGAGCGACACAGCAACTTATCTCTCTGATAAGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTATCCCATGAGCGACACAGCAACTTATCTCTCTGATAAGGGACA  450

seq1  ATGGATATTTAAATATAAAGTATGTATGGCCACAATATGAAAAGAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATTTAAATATAAAGTATGTATGGCCACAATATGAAAAGAGATTT  500

seq1  TCTCCTGTGAATCCTTTGCATTAAGACAATCCAAAGCACTTTTGTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGAATCCTTTGCATTAAGACAATCCAAAGCACTTTTGTCTTCC  550

seq1  CTGTCCCATTCTCCATGTCTTCAAAGCCAAACAGTAGCTGACTTTTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCATTCTCCATGTCTTCAAAGCCAAACAGTAGCTGACTTTTGTAG  600

seq1  AGAATGGATACTGGAGTTCATGAAACATTTCGCATCTTATAACAAAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGATACTGGAGTTCATGAAACATTTCGCATCTTATAACAAAGGAT  650

seq1  TTCCTACAATGTACTTGTCATTTCAACTCCAGCGGAAGCTTTAGGAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACAATGTACTTGTCATTTCAACTCCAGCGGAAGCTTTAGGAAGGT  700

seq1  TTACGAATTGTTTTGCTAATTAGATTTTAAAATTCCCTTCAATGTCTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAATTGTTTTGCTAATTAGATTTTAAAATTCCCTTCAATGTCTCTA  750

seq1  TTGCAAATGTAACCAACTTCCCCAAGATTTCAGTTATGCCCTGCAGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATGTAACCAACTTCCCCAAGATTTCAGTTATGCCCTGCAGACAG  800

seq1  ATCAGCCACAGAGGCAGCAAGACTAGCTAGTCCTTGGTTATGAACTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCACAGAGGCAGCAAGACTAGCTAGTCCTTGGTTATGAACTTGGA  850

seq1  CTTGTAAGACCCGAAGTCAGTGTTTAAGATAGGCTCAGGATTTTTAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGACCCGAAGTCAGTGTTTAAGATAGGCTCAGGATTTTTAACAC  900

seq1  CCACCTACAGGATTCCTATTCAAAGGAGTTGGAGAGAGGGCCAAAAAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTACAGGATTCCTATTCAAAGGAGTTGGAGAGAGGGCCAAAAAGGC  950

seq1  AGCTGAGGCATAGGGTTGAGTTGAACCAGAGCAAACAGCCCCTCTTCTAG  1000
      |||||| |||||||||||||||| |||||||| ||||||||||| |||||
seq2  AGCTGA-GCATAGGGTTGAGTTG-ACCAGAGC-AACAGCCCCTC-TCTAG  996

seq1  TGTGCACAGCAAAAGACTTTCCACCCATTATGTTGATGAAGGACCCTCCC  1050
      |||||||||| ||||||||||||||||||||| ||||||  |||||||||
seq2  TGTGCACAGC-AAAGACTTTCCACCCATTATG-TGATGA--GACCCTCCC  1042

seq1  AATCACTCAGGGCCACAAGCTAATCTCCTTTTGACATACAGACATAAGTG  1100
      ||||||||| ||||||||||| ||||||  |||||||||||||||| |||
seq2  AATCACTCA-GGCCACAAGCT-ATCTCC-CTTGACATACAGACATAGGTG  1089

seq1  CAAAATCTGAATATAACACAAGAAGA  1126
      | |||||||||| |||| ||||||||
seq2  C-AAATCTGAAT-TAAC-CAAGAAGA  1112

seq1: chr2_41786938_41787101
seq2: B6Ng01-165B08.g_584_745 (reverse)

seq1  AGGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTAC  50
      ||||| |||||||||| ||||||||||||||||||| |||||||||||||
seq2  AGGGG-TCTGCAACCCCATAGGTGGAACAACAATATAAACTAACCAGTAC  49

seq1  CCCCTGGAGCTCGTGTCTCTAGCTGCATATATATCAGAAGATGGCCTAGT  100
      ||||  |||||| ||||| ||||||||||| |||||||||||||||||||
seq2  CCCC-AGAGCTCATGTCTTTAGCTGCATATGTATCAGAAGATGGCCTAGT  98

seq1  AGGCCATCAGTGGAAAGAGAGGCCCATTGGTTGTAGAAACTTTATATGCC  150
       |||||||| ||| ||||||||||| |||||  |  ||||||||||||||
seq2  TGGCCATCACTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCC  148

seq1  TTAGTACAGGGGAA  164
      | ||||||||||||
seq2  TCAGTACAGGGGAA  162