BAC Information

Click to search

BAC

Clone NameB6Ng01-165I12
Chromosome13 (Build37)
Map Location 84,477,511 - 84,632,187
singlet/doubletdoublet
Overlap geneLOC667111
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795
Downstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165I12.bB6Ng01-165I12.g
ACCDH957566DH957567
length5531,024
definitionDH957566|Mus musculus domesticus DNA, BAC clone: B6Ng01-165I12, 5' end.DH957567|Mus musculus domesticus DNA, BAC clone: B6Ng01-165I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,477,511 - 84,478,069)(84,631,150 - 84,632,187)
sequence
caggacagccagggctacacagagaaactttagaggtgtgtggaagagga
gagagaaactaaaggttttcgttataaattattcttcaatattttaaagc
tgtgtattatatgctttactttataaaaatattaaacatgcaaagcatta
agtacagagaaatctcccacaggaaaatcgataacttggttagaaagttt
gtcaacccacaagaaaacctacagaatcaactgggttcacagggactcac
agagactgaactgacactcagggaccctgcatgggtctgacctaggcttt
ctgtgtatgtatgttatggctgtgtagcttgccctcatgggactccatcc
agtgggagtaggggctgtctctgattcttttgtgtgctttcgggactttt
tcaatcctactgggatcgtttatatgagaaaaaatgcctagttttacttg
gtatgccttatttggttgctatccctgggagacctgctatttttgaagag
aaacaaaatggactgggtgagaggggaagaggtgtggagggactggaagg
aga
gaattcatcagaatttaaaacgattactcttcaaaaaaatagtaacaaga
aagaaaaggcaagttacagactctgaaaaaaaagggaggggggaggcaca
tgtctcgaaaagaacctgtatactgaatgtactctaaaagcttcaacata
gtttttaatttttaaatcctttgagaattccatataaggtattgctccaa
ccccctccccccaaacttcagaggtccactcatagctccttgccccaaaa
aacttctcgtttgttgttgttgtttgtttgtttgtttgtttttaagcact
tcttgactggatccgatttgtgtggcccatgtactcctgagtttggaaat
gttaagactctccaagaacttctgacttctttctgctgttaaacagttta
tttagctgggaaatttataggatgatgcttgtcctcttgttcttaggatt
tgtaacttggtagttcatgtcttgcacatacattaggtcatttttactta
tcacagttggcattcactgtgacactggaaatataccccattatttcttt
tccttctgaaagtgttattagtcacagactgcatctgctcattctttttc
tcttaattttttagaaatattacttccagctgtgttactctcgtggctgc
tctctgggatcattttcctcagcctgtcatgtactctgttatccttaact
aggtacaatctattatttaaggcttttaacaatttttttttattttcaat
tactttctaatttctaaaaaaaatgtattttgttatctttcaatttgcac
tttcttgtgacttttccctgattccttgtttatattttactgttcataaa
caaattttccagtgtctaactattctaatgaattctaggatatactcaca
acctgttagttttgcctgttctctcttgggcaaattatcctaaggggtat
cattaaatgaaatgctccaatagctctacttggccaatttgggtctgttt
ggggtatttgaaaaatatgaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84477511_84478069
seq2: B6Ng01-165I12.b_46_604

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACTTTAGAGGTGTGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACTTTAGAGGTGTGTGGA  50

seq1  AGAGGAGAGAGAAACTAAAGGTTTTCGTTATAAATTATTCTTCAATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGAGAAACTAAAGGTTTTCGTTATAAATTATTCTTCAATATTT  100

seq1  TAAAGCTGTGTATTATATGCTTTACTTTATAAAAATATTAAACATGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGTGTATTATATGCTTTACTTTATAAAAATATTAAACATGCAAA  150

seq1  GCATTAAGTACAGAGAAATCTCCCACAGGAAAATCGATAACTTGGTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAGTACAGAGAAATCTCCCACAGGAAAATCGATAACTTGGTTAGA  200

seq1  AAGTTTGTCAACCCACAAGAAAACCTACAGAATCAACTGGGTTCACAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTCAACCCACAAGAAAACCTACAGAATCAACTGGGTTCACAGGG  250

seq1  ACTCACAGAGACTGAACTGACACTCAGGGACCCTGCATGGGTCTGACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGAGACTGAACTGACACTCAGGGACCCTGCATGGGTCTGACCTA  300

seq1  GGCTTTCTGTGTATGTATGTTATGGCTGTGTAGCTTGCCCTCATGGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTGTGTATGTATGTTATGGCTGTGTAGCTTGCCCTCATGGGACT  350

seq1  CCATCCAGTGGGAGTAGGGGCTGTCTCTGATTCTTTTGTGTGCTTTCGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGTGGGAGTAGGGGCTGTCTCTGATTCTTTTGTGTGCTTTCGGG  400

seq1  ACTTTTTCAATCCTACTGGGATCGTTTATATGAGAAAAAATGCCTAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCAATCCTACTGGGATCGTTTATATGAGAAAAAATGCCTAGTTT  450

seq1  TACTTGGTATGCCTTATTTGGTTGCTATCCCTGGGAGACCTGCTATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGTATGCCTTATTTGGTTGCTATCCCTGGGAGACCTGCTATTTTT  500

seq1  GAAGAGAAACAAAATGGACTGGGTGAGAGGGGAAGAGGTGTGGAGGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAACAAAATGGACTGGGTGAGAGGGGAAGAGGTGTGGAGGGACT  550

seq1  GGAAGGAGA  559
      |||||||||
seq2  GGAAGGAGA  559

seq1: chr13_84631150_84632187
seq2: B6Ng01-165I12.g_69_1092 (reverse)

seq1  CCCTTCATATATCTCTCAAATATCCCCAAACAGAAACACCAAATGTGACC  50
      ||||||  |||| | ||||||| |||||||||||    |||||| || ||
seq2  CCCTTC--ATATTTTTCAAATA-CCCCAAACAGA---CCCAAAT-TGGCC  43

seq1  AAGTAGAGCCTATTGGGAGCATTTCATTTAAATGATACCACCTTATGGAA  100
      |||||||| ||||| |||||||||||||| ||||||||| |||||  | |
seq2  AAGTAGAG-CTATT-GGAGCATTTCATTT-AATGATACC-CCTTA--GGA  87

seq1  TAATTTGCCCAATGAGAGAAACAGGCAAAACTAACAGGTTGTGAGTATAT  150
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TAATTTGCCCAA-GAGAG-AACAGGCAAAACTAACAGGTTGTGAGTATAT  135

seq1  CCTAAGAATTCATTAGAATAGTTAGACACTGGAAAATTTGTTTATGAACA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCT-AGAATTCATTAGAATAGTTAGACACTGGAAAATTTGTTTATGAACA  184

seq1  GTAAAATATAAAACAAGGAATCAAGGGAAAAGTCACAAGAAAGTGC-AAT  249
      ||||||||| |||||||||||| ||||||||||||||||||||||| |||
seq2  GTAAAATAT-AAACAAGGAATC-AGGGAAAAGTCACAAGAAAGTGCAAAT  232

seq1  TGAAAGATAACAAAATACA-TTTTTTTAGAAATTAGAAAGTAATTG-AAA  297
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  TGAAAGATAACAAAATACATTTTTTTTAGAAATTAGAAAGTAATTGAAAA  282

seq1  TTAAAAAAAATTGTTAAAAGCCTTAAATAATAGATTGTACCTAGTTAAGG  347
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAATTGTTAAAAGCCTTAAATAATAGATTGTACCTAGTTAAGG  332

seq1  ATAACAGAGTACATGACAGGCTGAGG-AAATGATCCCAGAGAGCAGCCAC  396
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATAACAGAGTACATGACAGGCTGAGGAAAATGATCCCAGAGAGCAGCCAC  382

seq1  GAGAGTAACACAGCTGGAAGTAATATTTCTAAAAAATTAAGAGAAAAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAACACAGCTGGAAGTAATATTTCTAAAAAATTAAGAGAAAAAGA  432

seq1  ATGAGCAGATGCAGTCTGTGACTAATAACACTTTCAGAAGGAAAAGAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGATGCAGTCTGTGACTAATAACACTTTCAGAAGGAAAAGAAAT  482

seq1  AATGGGGTATATTTCCAGTGTCACAGTGAATGCCAACTGTGATAAGTAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGTATATTTCCAGTGTCACAGTGAATGCCAACTGTGATAAGTAAA  532

seq1  AATGACCTAATGTATGTGCAAGACATGAACTACCAAGTTACAAATCCTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTAATGTATGTGCAAGACATGAACTACCAAGTTACAAATCCTAA  582

seq1  GAACAAGAGGACAAGCATCATCCTATAAATTTCCCAGCTAAATAAACTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAGGACAAGCATCATCCTATAAATTTCCCAGCTAAATAAACTGT  632

seq1  TTAACAGCAGAAAGAAGTCAGAAGTTCTTGGAGAGTCTTAACATTTCCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCAGAAAGAAGTCAGAAGTTCTTGGAGAGTCTTAACATTTCCAA  682

seq1  ACTCAGGAGTACATGGGCCACACAAATCGGATCCAGTCAAGAAGTGCTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGTACATGGGCCACACAAATCGGATCCAGTCAAGAAGTGCTTA  732

seq1  AAAACAAACAAACAAACAAACAACAACAACAAACGAGAAGTTTTTTGGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAACAAACAACAACAACAAACGAGAAGTTTTTTGGGG  782

seq1  CAAGGAGCTATGAGTGGACCTCTGAAGTTTGGGGGGAGGGGGTTGGAGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCTATGAGTGGACCTCTGAAGTTTGGGGGGAGGGGGTTGGAGCA  832

seq1  ATACCTTATATGGAATTCTCAAAGGATTTAAAAATTAAAAACTATGTTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTATATGGAATTCTCAAAGGATTTAAAAATTAAAAACTATGTTGA  882

seq1  AGCTTTTAGAGTACATTCAGTATACAGGTTCTTTTCGAGACATGTGCCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTAGAGTACATTCAGTATACAGGTTCTTTTCGAGACATGTGCCTC  932

seq1  CCCCCTCCCTTTTTTTTCAGAGTCTGTAACTTGCCTTTTCTTTCTTGTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCTTTTTTTTCAGAGTCTGTAACTTGCCTTTTCTTTCTTGTTA  982

seq1  CTATTTTTTTGAAGAGTAATCGTTTTAAATTCTGATGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTTGAAGAGTAATCGTTTTAAATTCTGATGAATTC  1024