BAC Information

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BAC

Clone NameB6Ng01-167K22
Chromosome13 (Build37)
Map Location 79,023,661 - 79,134,313
singlet/doubletdoublet
Overlap geneEG666883
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneLOC666925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167K22.bB6Ng01-167K22.g
ACCDH959111DH959112
length1,1131,113
definitionDH959111|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K22, 5' end.DH959112|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,133,179 - 79,134,313)(79,023,661 - 79,024,796)
sequence
gaattcttttcattggaaagaatttctaacttgaattctttgttcaaaat
tatgataagtaaatctctgttaactgaatagtagcactgcagcctttata
catctctagatttaatgaattcatttaattcatcttttcaagagaagata
tcaactctgaccttgagtgtcttattgataactacttctttatataacaa
aaacataattctgaatgagttttggctagtttcaactagtaagttaactt
ttaatgatttcagtctatcatctataaaatgaagaaatttctgtaaagtc
ctgagataaagcctgggattaaacaaatgtaacatctgtcttcattgcca
tgactacttttaatatggatatccacacatatatgcaataccaaataata
ttatatataattttatgttactcagtgtagtaaattatttatctcagtga
tttttgaggaagaccaaaaggaaactgctcttacaataaaaaataaataa
aattagaatttgattatgtatatagattaaagagtatttctttcatagtt
cccctctttaattatttttccttggtctaggttcctcaatttcataaaat
acttttaaatttatgttattactatatatttccataagaattattaaatt
atatttcttgaacgtggaattctgtggtgctgcagttttctacataagta
attttatttaacaacatttaaataagaccttggtttggaaggtcttaaag
ttaggtttacaggctcctttgtgactgccaatttcctgaaaatgtcccag
agaactccagctgcctaaaagatgtgttcttcctcatttcttgaagcttt
taatcttttttcctaaaagttaaatcaaggcttaatttctcaaggttttt
aaacacaaaatctaatcaaattacttttaattcattcattatggacaaat
attaaaaataaactgtgtgttaaaatactatattagatttctgactaaag
agctgacaaatacagagcagatgctgcatcaacactgactgagcagggtt
cccatgagaattggagaaagactgaggactgaaagtttgcacccatagaa
gaacaaactatca
gaattcattcttaccatgtatcccagagaattcagcatacattatttatt
ttcttcagctggtgattttcatctctgaagtgaagaaaacatttgcctag
cttctctttgtcatggagaaattgccagtagtagttcttcagcatcttca
taaggtaaagcaatggtctttggatcacagcaactgaacccatggataac
tcacatccagagcaggatgggctgaatttccatcagagttttgttacact
cttcagagttccatgcaatttaatacagtgaataatttctagaagtttcc
acttgatagctttagtaaaggaacagaaactacagaaagcaaaaataaca
aaaaaggggaaaccatatgccacattcaagagggaaaattgctgaagtta
ttcagcagaaatcacaactgaatgtggttgaaaactcaatcatatataag
ttgtaaatgactgtgtaattgtgaaggccaaatctgaggtcatgaggaag
gcaataaagtctttattcttaagtacagcatccaagaactcagtcaatga
ataaagagaatctggtcttgcttttcagtaacagtagaagttactactgc
cctggtatttggtagtgatttagtgcaattttttttaagttcctctcttc
cagtgagtgttttgcctactgttatcatgtcttgtatataccacctcctt
ggtaatctttcagtatttagtctgggaagtgaagggagctcaggaaacgg
tgatcttgaacacaaatacaaagttctctgtattcatgctgtagatgtaa
tagagatttatatttcattacaattctttataacttacttttatcgataa
acccttctcataatttataaagaaacgatttgtaattgaggtccaatgtt
ctaatttcaagtatcttggcaactatttttgttgctatactggctgttta
gtattgaattagaaatggacaaacacgatagtagttggctctagcatatt
tgtgtggatcagagtgctacggcattgctcagattgcagagttgggaact
cattctccttcatgattttaagtgtgtgcagctcactcatgaacacaact
ttggatgcttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79133179_79134313
seq2: B6Ng01-167K22.b_44_1156 (reverse)

seq1  TGATAGTTTTGTTCTTCCTATGGGGTTGCAAACCCTTTCAGCTCCTTCAG  50
      |||||| ||||||||| |||||||  ||||||  ||||||| ||| ||||
seq2  TGATAG-TTTGTTCTT-CTATGGG--TGCAAA--CTTTCAG-TCC-TCAG  42

seq1  TCCTTTCTCCAATTCCTTCATTGGGGACCCCTTGCTCAGTCCAGTGGTTG  100
      | |||||||||||||  ||||  |||| ||| |||||||| |||| ||||
seq2  T-CTTTCTCCAATTC--TCAT--GGGAACCC-TGCTCAGT-CAGT-GTTG  84

seq1  ATTGCCAGCATCTGCCTCTGTATTTGTCAGGCTCTTTAGTTCAGAAATCT  150
      ||   ||||||||| |||||||||||||| ||||||||| ||||||||||
seq2  AT--GCAGCATCTG-CTCTGTATTTGTCA-GCTCTTTAG-TCAGAAATCT  129

seq1  AATATAGTATTTTAACACACAGTTTATTTTTAATATTTGTCCATAATTGA  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATATAGTATTTTAACACACAGTTTATTTTTAATATTTGTCCATAA-TGA  178

seq1  ATGAATTAAAAGTAATTTGATTAGATTTTGTGTTTAAAAACCTTGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAAAAGTAATTTGATTAGATTTTGTGTTTAAAAACCTTGAGAAA  228

seq1  TTAAGCCTTGATTTAACTTTTAGGAAAAAAGATTAAAAGCTTCAAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCTTGATTTAACTTTTAGGAAAAAAGATTAAAAGCTTCAAGAAAT  278

seq1  GAGGAAGAACACATCTTTTAGGCAGCTGGAGTTCTCTGGGACATTTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAACACATCTTTTAGGCAGCTGGAGTTCTCTGGGACATTTTCAG  328

seq1  GAAATTGGCAGTCACAAAGGAGCCTGTAAACCTAACTTTAAGACCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGCAGTCACAAAGGAGCCTGTAAACCTAACTTTAAGACCTTCCA  378

seq1  AACCAAGGTCTTATTTAAATGTTGTTAAATAAAATTACTTATGTAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGTCTTATTTAAATGTTGTTAAATAAAATTACTTATGTAGAAAA  428

seq1  CTGCAGCACCACAGAATTCCACGTTCAAGAAATATAATTTAATAATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCACCACAGAATTCCACGTTCAAGAAATATAATTTAATAATTCTT  478

seq1  ATGGAAATATATAGTAATAACATAAATTTAAAAGTATTTTATGAAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATATATAGTAATAACATAAATTTAAAAGTATTTTATGAAATTGA  528

seq1  GGAACCTAGACCAAGGAAAAATAATTAAAGAGGGGAACTATGAAAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTAGACCAAGGAAAAATAATTAAAGAGGGGAACTATGAAAGAAAT  578

seq1  ACTCTTTAATCTATATACATAATCAAATTCTAATTTTATTTATTTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTAATCTATATACATAATCAAATTCTAATTTTATTTATTTTTTAT  628

seq1  TGTAAGAGCAGTTTCCTTTTGGTCTTCCTCAAAAATCACTGAGATAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGCAGTTTCCTTTTGGTCTTCCTCAAAAATCACTGAGATAAATA  678

seq1  ATTTACTACACTGAGTAACATAAAATTATATATAATATTATTTGGTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTACACTGAGTAACATAAAATTATATATAATATTATTTGGTATTG  728

seq1  CATATATGTGTGGATATCCATATTAAAAGTAGTCATGGCAATGAAGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGTGTGGATATCCATATTAAAAGTAGTCATGGCAATGAAGACAG  778

seq1  ATGTTACATTTGTTTAATCCCAGGCTTTATCTCAGGACTTTACAGAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACATTTGTTTAATCCCAGGCTTTATCTCAGGACTTTACAGAAATT  828

seq1  TCTTCATTTTATAGATGATAGACTGAAATCATTAAAAGTTAACTTACTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTTTATAGATGATAGACTGAAATCATTAAAAGTTAACTTACTAG  878

seq1  TTGAAACTAGCCAAAACTCATTCAGAATTATGTTTTTGTTATATAAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTAGCCAAAACTCATTCAGAATTATGTTTTTGTTATATAAAGAA  928

seq1  GTAGTTATCAATAAGACACTCAAGGTCAGAGTTGATATCTTCTCTTGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATCAATAAGACACTCAAGGTCAGAGTTGATATCTTCTCTTGAAA  978

seq1  AGATGAATTAAATGAATTCATTAAATCTAGAGATGTATAAAGGCTGCAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATTAAATGAATTCATTAAATCTAGAGATGTATAAAGGCTGCAGT  1028

seq1  GCTACTATTCAGTTAACAGAGATTTACTTATCATAATTTTGAACAAAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTATTCAGTTAACAGAGATTTACTTATCATAATTTTGAACAAAGAA  1078

seq1  TTCAAGTTAGAAATTCTTTCCAATGAAAAGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTAGAAATTCTTTCCAATGAAAAGAATTC  1113

seq1: chr13_79023661_79024796
seq2: B6Ng01-167K22.g_68_1180

seq1  GAATTCATTCTTACCATGTATCCCAGAGAATTCAGCATACATTATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTACCATGTATCCCAGAGAATTCAGCATACATTATTTATT  50

seq1  TTCTTCAGCTGGTGATTTTCATCTCTGAAGTGAAGAAAACATTTGCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGCTGGTGATTTTCATCTCTGAAGTGAAGAAAACATTTGCCTAG  100

seq1  CTTCTCTTTGTCATGGAGAAATTGCCAGTAGTAGTTCTTCAGCATCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTGTCATGGAGAAATTGCCAGTAGTAGTTCTTCAGCATCTTCA  150

seq1  TAAGGTAAAGCAATGGTCTTTGGATCACAGCAACTGAACCCATGGATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAAAGCAATGGTCTTTGGATCACAGCAACTGAACCCATGGATAAC  200

seq1  TCACATCCAGAGCAGGATGGGCTGAATTTCCATCAGAGTTTTGTTACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCAGAGCAGGATGGGCTGAATTTCCATCAGAGTTTTGTTACACT  250

seq1  CTTCAGAGTTCCATGCAATTTAATACAGTGAATAATTTCTAGAAGTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGTTCCATGCAATTTAATACAGTGAATAATTTCTAGAAGTTTCC  300

seq1  ACTTGATAGCTTTAGTAAAGGAACAGAAACTACAGAAAGCAAAAATAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATAGCTTTAGTAAAGGAACAGAAACTACAGAAAGCAAAAATAACA  350

seq1  AAAAAGGGGAAACCATATGCCACATTCAAGAGGGAAAATTGCTGAAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGGAAACCATATGCCACATTCAAGAGGGAAAATTGCTGAAGTTA  400

seq1  TTCAGCAGAAATCACAACTGAATGTGGTTGAAAACTCAATCATATATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGAAATCACAACTGAATGTGGTTGAAAACTCAATCATATATAAG  450

seq1  TTGTAAATGACTGTGTAATTGTGAAGGCCAAATCTGAGGTCATGAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATGACTGTGTAATTGTGAAGGCCAAATCTGAGGTCATGAGGAAG  500

seq1  GCAATAAAGTCTTTATTCTTAAGTACAGCATCCAAGAACTCAGTCAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAGTCTTTATTCTTAAGTACAGCATCCAAGAACTCAGTCAATGA  550

seq1  ATAAAGAGAATCTGGTCTTGCTTTTCAGTAACAGTAGAAGTTACTACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGAATCTGGTCTTGCTTTTCAGTAACAGTAGAAGTTACTACTGC  600

seq1  CCTGGTATTTGGTAGTGATTTAGTGCAATTTTTTTTAAGTTCCTCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTATTTGGTAGTGATTTAGTGCAATTTTTTTTAAGTTCCTCTCTTC  650

seq1  CAGTGAGTGTTTTGCCTACTGTTATCATGTCTTGTATATACCACCTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTGTTTTGCCTACTGTTATCATGTCTTGTATATACCACCTCCTT  700

seq1  GGTAATCTTTCAGTATTTAGTCTGGGAAGTGAAGGGAGCTCAGGAAACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCTTTCAGTATTTAGTCTGGGAAGTGAAGGGAGCTCAGGAAACGG  750

seq1  TGATCTTGAACACAAATACAAAGTTCTCTGTATTCATGCTGTAGATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGAACACAAATACAAAGTTCTCTGTATTCATGCTGTAGATGTAA  800

seq1  TAGAGATTTATATTTCATTACAATTCTTTATAACTTACTTTTATCGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTTATATTTCATTACAATTCTTTATAACTTACTTTTATCGATAA  850

seq1  ACCCTTCTCATAATTTATAAAGAAACGATTTGTAATTGAGGTCCAATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTCATAATTTATAAAGAAACGATTTGTAATTGAGGTCCAATGTT  900

seq1  CTAAATTTCAAGTATCTTGGCAACTATTTTTGTTGCTATTACTGGCTGTT  950
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CT-AATTTCAAGTATCTTGGCAACTATTTTTGTTGCTA-TACTGGCTGTT  948

seq1  TAAGGTATTGAATTAGAAATGGACCAAAACACGGATAGTAGGTTGGGCTC  1000
      ||  ||||||||||||||||||||  |||||| ||||||||  | |||| 
seq2  TA--GTATTGAATTAGAAATGGAC--AAACAC-GATAGTAG--TTGGCT-  990

seq1  CTAGCATATTTGTGTGGAATCAGAGTGCTACGGCATTGCTCAGGAATTGC  1050
      ||||||||||||||||| |||||||||||||||||||||||||  |||||
seq2  CTAGCATATTTGTGTGG-ATCAGAGTGCTACGGCATTGCTCAG--ATTGC  1037

seq1  AAGAGTTTGGGAAACTTCATTCTCCTCCATGAATTTTAAAGTGTGTGCAA  1100
       |||| |||||||   |||||||||| |||||  ||| |||||||||| |
seq2  -AGAG-TTGGGAA--CTCATTCTCCTTCATGA--TTTTAAGTGTGTGC-A  1080

seq1  GCTTCACTCAGTGAACACAACTTTGAAATGCTTCTA  1136
      || ||||||| ||||||||||||||  |||||||||
seq2  GC-TCACTCA-TGAACACAACTTTG-GATGCTTCTA  1113