BAC Information

Click to search

BAC

Clone NameB6Ng01-168A12
Chromosome13 (Build37)
Map Location 55,360,628 - 55,503,538
singlet/doubletdoublet
Overlap geneNsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1
Upstream geneLOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4
Downstream genePfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168A12.bB6Ng01-168A12.g
ACCDH959375DH959376
length1,1091,032
definitionDH959375|Mus musculus domesticus DNA, BAC clone: B6Ng01-168A12, 5' end.DH959376|Mus musculus domesticus DNA, BAC clone: B6Ng01-168A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,360,628 - 55,361,758)(55,502,500 - 55,503,538)
sequence
gaattcatgttgtttcccaacatgttcttaacatgttccttcacattaga
aataaatgttattagtattatgaaacttgaatgtctagtggggaatttat
caaattataatctattatagttgcttcagagcataaagttatgagtatga
atgtgtatacttattcctaggcatgtttaaccaagacacagcttcaatgg
ttagcatgcatggttcattgtagacagaacatcatcgtggcagcaggaac
gtgagacaactttgctacattggttgggcaatttctctactttggttcat
ttataggtatatattatgtaacataaaacagtaagaaaaattctgtcttt
ttgtttgtttgtttgtttgttttatttttagttttttcgagacagggttt
ctctgtatagctctggctgtcctggaactcactctgtagaccaggctggc
ctcgaactcagaaatcctcctgcctctacctccaaagtgctgggattaaa
gtcgtgcgccaccacacccggctcccaaaagggtttcttatcaagaagaa
tatcagatgtttgctccagtttaccagcactctgcatttctattttagat
atatgctaactttgtactgggatacagaatgctagctttagcttaatctt
ttccttaagaatggagatttgtatatactgggagtttgtatagaaataaa
ctcaactcttttttttttttcgttttttccagacagggtttctctgtata
gtcttggctgtcctggaactcactctgtagaccaggttggctttgaactc
agaaatccatctgcctctgtgtcccaaatgctgggattataggcatgcgc
catcactgcccagcaactcttcaagttttgtttgtgataaaccatagcaa
ataatttcaagctttttactatttagcagaactctttttcatttttgaag
ttgttttgagactctttagtaagcaggattgactttcaggagtgtagtgg
tggttcatgaaatagtggttaaatataggacagtcatcagtaatattgta
tatttctgttagctatcggtcgagaggaaccgcctcagagcgagcagtgc
ttctggaat
gaattcacacgttcagctctagtactctctaattttttaccatgaggcag
catctcttgcataacctggagctaggtggtagccatggcactccagcaat
tccaccgatgctcctggcactggtgtgtgtgcagctgtgcccaggctctt
atgtgagtactggaaattcaaacaggggacttcacatcatatagcaagca
ctctgacccactgagactccctagccccaggtaaagaagatgattcgtga
tcttcctggagggagagatttcacctgtagctcacagggttggcttccac
ctacacaccctgcccctctgaataggtcacactgtaaatgtcagacttgg
gcacccagccacacaatctcaaaagtcaattcttttttttttttaatgat
gtatctatttttatttcatgtgcactggtgttttgcctgcatgtatgttt
gagtgaaggtgttggagatcctgaaactcaaggtgaaactgaagttacag
gcagttgtgagctgccatgagagtactgggaattgaagctgggtcctctg
gaagagcagcctgtgttcttgaccactaagagcatccctgcagccctgta
agtcaattctttgcaatagattgcatgcgtggggtggtttttactggctg
gctttctctggctttcctgagcaatggtgtggctgaagggaggtggcctt
ccaggagctgtggttccccctctgccacactccccagctcccggagctcc
tttctgactcagctcttggccttgtttcaggggacagtgcaagagatgct
gaagtcccacccttcccctcagcctcctcagcaattccacatgcctgccc
cgatcgtgaaggaccaggcccttgggctctatccccggccatgctgggcc
gactcacagccggagagaccatgctgacaatgatggatgtagaggtactg
gactctgcaccagactgtcaccagatcctcaccaccagccctgccactgg
ttgatagatggcattgtccttgaagatgtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55360628_55361758
seq2: B6Ng01-168A12.b_42_1150

seq1  GAATTCATGTTGTTTCCCAACATGTTCTTAACATGTTCCTTCACATTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTGTTTCCCAACATGTTCTTAACATGTTCCTTCACATTAGA  50

seq1  AATAAATGTTATTAGTATTATGAAACTTGAATGTCTAGTGGGGAATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGTTATTAGTATTATGAAACTTGAATGTCTAGTGGGGAATTTAT  100

seq1  CAAATTATAATCTATTATAGTTGCTTCAGAGCATAAAGTTATGAGTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATAATCTATTATAGTTGCTTCAGAGCATAAAGTTATGAGTATGA  150

seq1  ATGTGTATACTTATTCCTAGGCATGTTTAACCAAGACACAGCTTCAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATACTTATTCCTAGGCATGTTTAACCAAGACACAGCTTCAATGG  200

seq1  TTAGCATGCATGGTTCATTGTAGACAGAACATCATCGTGGCAGCAGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGCATGGTTCATTGTAGACAGAACATCATCGTGGCAGCAGGAAC  250

seq1  GTGAGACAACTTTGCTACATTGGTTGGGCAATTTCTCTACTTTGGTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAACTTTGCTACATTGGTTGGGCAATTTCTCTACTTTGGTTCAT  300

seq1  TTATAGGTATATATTATGTAACATAAAACAGTAAGAAAAATTCTGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTATATATTATGTAACATAAAACAGTAAGAAAAATTCTGTCTTT  350

seq1  TTGTTTGTTTGTTTGTTTGTTTTATTTTTAGTTTTTTCGAGACAGGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTTGTTTTATTTTTAGTTTTTTCGAGACAGGGTTT  400

seq1  CTCTGTATAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  450

seq1  CTCGAACTCAGAAATCCTCCTGCCTCTACCTCCAAAGTGCTGGGATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACTCAGAAATCCTCCTGCCTCTACCTCCAAAGTGCTGGGATTAAA  500

seq1  GTCGTGCGCCACCACACCCGGCTCCCAAAAGGGTTTCTTATCAAGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGCGCCACCACACCCGGCTCCCAAAAGGGTTTCTTATCAAGAAGAA  550

seq1  TATCAGATGTTTGCTCCAGTTTACCAGCACTCTGCATTTCTATTTTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATGTTTGCTCCAGTTTACCAGCACTCTGCATTTCTATTTTAGAT  600

seq1  ATATGCTAACTTTGTACTGGGATACAGAATGCTAGCTTTAGCTTAATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAACTTTGTACTGGGATACAGAATGCTAGCTTTAGCTTAATCTT  650

seq1  TTCCTTAAGAATGGAGATTTGTATATACTGGGAGTTTGTATAGAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAGAATGGAGATTTGTATATACTGGGAGTTTGTATAGAAATAAA  700

seq1  CTCAACTCTTTTTTTTTTTTCGTTTTTTCCAGACAGGGTTTCTCTGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCTTTTTTTTTTTTCGTTTTTTCCAGACAGGGTTTCTCTGTATA  750

seq1  GTCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCTTTGAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCTTTGAACTC  800

seq1  AGAAATCCATCTGCCTCTGTGTCCCAAATGCTGGGATTATAGGCATGCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCATCTGCCTCTGTGTCCCAAATGCTGGGATTATAGGCATGCGC  850

seq1  CATCACTGCCCAGCAACTCTTCAAGTTTTGTTTGTGATAAACCATAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGCCCAGCAACTCTTCAAGTTTTGTTTGTGATAAACCATAGCAA  900

seq1  ATAATTTCAAGCTTTTTACTATTTAAGCAGAACTCTTTTTCATTTTTTGA  950
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  ATAATTTCAAGCTTTTTACTATTT-AGCAGAACTCTTTTTCA-TTTTTGA  948

seq1  AGTTGTTTTGAGACTCTTTAGTAAGCAGGAATTGACTTTCAGGAGTGTAG  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGTTGTTTTGAGACTCTTTAGTAAGCAGG-ATTGACTTTCAGGAGTGTAG  997

seq1  TGGTGGTTTCATGAAATAGTGGGTTAAATTAATTAAGACAGTTCATCAGT  1050
      |||||| ||||||||||||| ||||||||    || ||||| ||||||| 
seq2  TGGTGG-TTCATGAAATAGT-GGTTAAAT---ATAGGACAG-TCATCAG-  1040

seq1  TAATATTGTAATTAATTTCTGTTTTAGCTATTCGGTCAGAGAAGAAACGC  1100
      ||||||||||    |||||||  ||||||| |||||| |||| ||| |||
seq2  TAATATTGTA---TATTTCTG--TTAGCTA-TCGGTC-GAGAGGAACCGC  1083

seq1  CTCAGGAAGCCGAGCAAGTGGCTTCTGGAAT  1131
      |||||  || ||||| ||| |||||||||||
seq2  CTCAG--AG-CGAGC-AGT-GCTTCTGGAAT  1109

seq1: chr13_55502500_55503538
seq2: B6Ng01-168A12.g_67_1098 (reverse)

seq1  GGGACATCTTCAAGGACAATGCCATCCTATCCAACCCAGTGGCAGGGCTG  50
      ||||||||||||||||||||||||| |||||  | |||||||||||||||
seq2  GGGACATCTTCAAGGACAATGCCAT-CTATC--AACCAGTGGCAGGGCTG  47

seq1  GTGGTGGGGATCCTGGTGACAGTTCTGGTGCAGAGTTCCAGTACCTCTAC  100
      |||||| |||| |||||||||| |||||||||||| ||||||||||||||
seq2  GTGGTGAGGAT-CTGGTGACAG-TCTGGTGCAGAG-TCCAGTACCTCTAC  94

seq1  ATCCATCATTGTCAGCATGGTCTCCTCCGGCTGTGAGTCGGCCCAGCATG  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCCATCATTGTCAGCATGGTCT-CTCCGGCTGTGAGTCGGCCCAGCATG  143

seq1  GCCGGGGATAGAGCCCAAGGGCCTGGTCCTTCACGATCGGGGCAGGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGGATAGAGCCCAAGGGCCTGGTCCTTCACGATCGGGGCAGGCATG  193

seq1  TGGAATTGCTGAGGAGGCTGAGGGGAAGGGTGGGACTTCAGCATCTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGCTGAGGAGGCTGAGGGGAAGGGTGGGACTTCAGCATCTCTTG  243

seq1  CACTGTCCCCTGAAACAAGGCCAAGAGCTGAGTCAGAAAGGAGCTCCGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCCCTGAAACAAGGCCAAGAGCTGAGTCAGAAAGGAGCTCCGGG  293

seq1  AGCTGGGGAGTGTGGCAGAGGGGGAACCACAGCTCCTGGAAGGCCACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGAGTGTGGCAGAGGGGGAACCACAGCTCCTGGAAGGCCACCTC  343

seq1  CCTTCAGCCACACCATTGCTCAGGAAAGCCAGAGAAAGCCAGCCAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCCACACCATTGCTCAGGAAAGCCAGAGAAAGCCAGCCAGTAAA  393

seq1  AACCACCCCACGCATGCAATCTATTGCAAAGAATTGACTTACAGGGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCCCACGCATGCAATCTATTGCAAAGAATTGACTTACAGGGCTGC  443

seq1  AGGGATGCTCTTAGTGGTCAAGAACACAGGCTGCTCTTCCAGAGGACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCTCTTAGTGGTCAAGAACACAGGCTGCTCTTCCAGAGGACCCA  493

seq1  GCTTCAATTCCCAGTACTCTCATGGCAGCTCACAACTGCCTGTAACTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAATTCCCAGTACTCTCATGGCAGCTCACAACTGCCTGTAACTTCA  543

seq1  GTTTCACCTTGAGTTTCAGGATCTCCAACACCTTCACTCAAACATACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACCTTGAGTTTCAGGATCTCCAACACCTTCACTCAAACATACATG  593

seq1  CAGGCAAAACACCAGTGCACATGAAATAAAAATAGATACATCATTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAACACCAGTGCACATGAAATAAAAATAGATACATCATTAAAAA  643

seq1  AAAAAAAGAATTGACTTTTGAGATTGTGTGGCTGGGTGCCCAAGTCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAATTGACTTTTGAGATTGTGTGGCTGGGTGCCCAAGTCTGAC  693

seq1  ATTTACAGTGTGACCTATTCAGAGGGGCAGGGTGTGTAGGTGGAAGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGTGTGACCTATTCAGAGGGGCAGGGTGTGTAGGTGGAAGCCAA  743

seq1  CCCTGTGAGCTACAGGTGAAATCTCTCCCTCCAGGAAGATCACGAATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGAGCTACAGGTGAAATCTCTCCCTCCAGGAAGATCACGAATCAT  793

seq1  CTTCTTTACCTGGGGCTAGGGAGTCTCAGTGGGTCAGAGTGCTTGCTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTACCTGGGGCTAGGGAGTCTCAGTGGGTCAGAGTGCTTGCTATA  843

seq1  TGATGTGAAGTCCCCTGTTTGAATTTCCAGTACTCACATAAGAGCCTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGAAGTCCCCTGTTTGAATTTCCAGTACTCACATAAGAGCCTGGG  893

seq1  CACAGCTGCACACACACCAGTGCCAGGAGCATCGGTGGAATTGCTGGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGCACACACACCAGTGCCAGGAGCATCGGTGGAATTGCTGGAGT  943

seq1  GCCATGGCTACCACCTAGCTCCAGGTTATGCAAGAGATGCTGCCTCATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCTACCACCTAGCTCCAGGTTATGCAAGAGATGCTGCCTCATGG  993

seq1  TAAAAAATTAGAGAGTACTAGAGCTGAACGTGTGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTAGAGAGTACTAGAGCTGAACGTGTGAATTC  1032