BAC Information

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BAC

Clone NameB6Ng01-169P12
Chromosome13 (Build37)
Map Location 18,491,042 - 18,492,125
singlet/doubletsinglet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169P12.bB6Ng01-169P12.g
ACCDH960802DH960803
length1,2281,071
definitionDH960802|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P12, 5' end.DH960803|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagaaattgaagttttattcatac
agatctttcacctccttagttagagtcacgccaagatattttatattatt
gtgactatgagaaggtgtgttccctaatttctttctcagcctgttattct
ttgattagagaaagccattgacttgttgagttattttatatcagctaact
tcaccgaagctgtttatcatgtttaggagtctctggtaaattttaagggt
cacttaatataacaatcatatcactcgcaaagtgctatttgaccttcctc
ttttcaattgtatctggaatcctggtggcgaatgcctgcaatcttcagaa
ctagtggtaataatcagtctggatgcaa
gaattcattcattctcagcaaatgctttctaaatgaacaccagacacagc
tgctgagtgtatggagtagatagcctagcaagggtacacattgagctagc
agtcaagcaaagaatggaaatcacagaattgatctcaggtcatctccagg
gaacataaaaaaacaggataggaccaagatggccctttccatttccacaa
actttgggtatgctactctgaatagggagagcttccatagaggttaataa
gttatctaatttaaaagcctgctcctgccccgccccacttcatgtaagtt
aaagcaatttgcttcatcctatgaaaagacaattttggaaattcttgaac
aagagtgctgggggatgggtcagttgctagagtgcttgctgtgaagcagg
acgacctgagttttatcccaggcacacgtgtgaaagtggatacaactgga
tatctgaagctactggccatcctaggcaaattgccatactccgtgaccta
gtgagaaaccctgtctcaaaatacaaggcagatggctgccaagaaacaac
atcaaaggttgtgatctggcacacacacgtacacacacacacacacacac
atctgcatgtgcatttgcacacacatgatcccccaacacatatgaacctt
tcatacacacacaaatctgaaatacagtcctgtaggactggatgatcaaa
gtggaactgagagactgggggcctttgccccttctgctgctgactgcttg
ctggctgtcatgctctagcaggagagagtagctcagcagctcccacctgg
gtgtgattaggttgggattattttgcagggcgaccccctccatattatgg
tgttgtttcctatgactctgcactgagatgcccagaaccatcactcctta
ggtacaatggataacatcacctgaaaattccactctgtattattatgagc
tgcaattctcctgtaataacccagttgtaaaatgatatgtatctatgtaa
ttgagtcttctgttacaataaataagactttattgcattgtcgaagttaa
ccgaccggtcaataaaatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18491042_18492125
seq2: B6Ng01-169P12.g_68_1138

seq1  GAATTCATTCATTCTCAGCAAATGCTTTCTAAATGAACACCAGACACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTCTCAGCAAATGCTTTCTAAATGAACACCAGACACAGC  50

seq1  TGCTGAGTGTATGGAGTAGATAGCCTAGCAAGGGTACACATTGAGCTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTGTATGGAGTAGATAGCCTAGCAAGGGTACACATTGAGCTAGC  100

seq1  AGTCAAGCAAAGAATGGAAATCACAGAATTGATCTCAGGTCATCTCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGCAAAGAATGGAAATCACAGAATTGATCTCAGGTCATCTCCAGG  150

seq1  GAACATAAAAAAACAGGATAGGACCAAGATGGCCCTTTCCATTTCCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAAAAAACAGGATAGGACCAAGATGGCCCTTTCCATTTCCACAA  200

seq1  ACTTTGGGTATGCTACTCTGAATAGGGAGAGCTTCCATAGAGGTTAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGTATGCTACTCTGAATAGGGAGAGCTTCCATAGAGGTTAATAA  250

seq1  GTTATCTAATTTAAAAGCCTGCTCCTGCCCCGCCCCACTTCATGTAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTAATTTAAAAGCCTGCTCCTGCCCCGCCCCACTTCATGTAAGTT  300

seq1  AAAGCAATTTGCTTCATCCTATGAAAAGACAATTTTGGAAATTCTTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATTTGCTTCATCCTATGAAAAGACAATTTTGGAAATTCTTGAAC  350

seq1  AAGAGTGCTGGGGGATGGGTCAGTTGCTAGAGTGCTTGCTGTGAAGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGCTGGGGGATGGGTCAGTTGCTAGAGTGCTTGCTGTGAAGCAGG  400

seq1  ACGACCTGAGTTTTATCCCAGGCACACGTGTGAAAGTGGATACAACTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCTGAGTTTTATCCCAGGCACACGTGTGAAAGTGGATACAACTGGA  450

seq1  TATCTGAAGCTACTGGCCATCCTAGGCAAATTGCCATACTCCGTGACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAAGCTACTGGCCATCCTAGGCAAATTGCCATACTCCGTGACCTA  500

seq1  GTGAGAAACCCTGTCTCAAAATACAAGGCAGATGGCTGCCAAGAAACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAACCCTGTCTCAAAATACAAGGCAGATGGCTGCCAAGAAACAAC  550

seq1  ATCAAAGGTTGTGATCTGGCACACACACGTACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGTTGTGATCTGGCACACACACGTACACACACACACACACACAC  600

seq1  ATCTGCATGTGCATTTGCACACACATGATCCCCCAACACATATGAACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATGTGCATTTGCACACACATGATCCCCCAACACATATGAACCTT  650

seq1  TCATACACACACAAATCTGAAATACAGTCCTGTAGGACTGGATGATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACACACAAATCTGAAATACAGTCCTGTAGGACTGGATGATCAAA  700

seq1  GTGGAACTGAGAGACTGGGGGCCTTTGCCCCTTCTGCTGCTGACTGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACTGAGAGACTGGGGGCCTTTGCCCCTTCTGCTGCTGACTGCTTG  750

seq1  CTGGCTGTCATGCTCTAGCAGGAGAGAGTAGCTCAGCAGCTCCCACCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCATGCTCTAGCAGGAGAGAGTAGCTCAGCAGCTCCCACCTGG  800

seq1  GTGTGATTAGGTTGGGATTA-TTTGCAGGGCGACCCCCTCCATATTATGG  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGTGATTAGGTTGGGATTATTTTGCAGGGCGACCCCCTCCATATTATGG  850

seq1  TGTTGTTTCCTAATGACTCTGCACTGAGATGCCCAGAACCATCACTTCCT  899
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  TGTTGTTTCCT-ATGACTCTGCACTGAGATGCCCAGAACCATCAC-TCCT  898

seq1  TAGGTAACAATGGATAAACATCAGCTTGAGAAATTCCAACTCTGTATTAT  949
      ||||| ||||||||| ||||||| | ||| ||||||| ||||||||||| 
seq2  TAGGT-ACAATGGAT-AACATCA-CCTGA-AAATTCC-ACTCTGTATTA-  942

seq1  TTATGAAGCTGCAATTCTCCTGTAAATAACCCAGTTGTTAAAATGATATG  999
      ||||| ||||||||||||||||| ||||||||||||| ||||||||||||
seq2  TTATG-AGCTGCAATTCTCCTGT-AATAACCCAGTTG-TAAAATGATATG  989

seq1  TATCTATGTAATTGAGTCTTCTGTATACAAATAAATAAGACTTTATTGCA  1049
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  TATCTATGTAATTGAGTCTTCTGT-TAC-AATAAATAAGACTTTATTGCA  1037

seq1  ATGTCAGAAGTTAACAGACCGGTCAATAAAATCAA  1084
       |||| ||||||||| |||||||||||||||||||
seq2  TTGTC-GAAGTTAACCGACCGGTCAATAAAATCAA  1071