BAC Information

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BAC

Clone NameB6Ng01-170D02
Chromosome13 (Build37)13 (Build37)
Map Location 65,588,437 - 65,589,52865,892,191 - 65,892,914
singlet/doubletsingletsinglet
Overlap geneLOC665777
Upstream gene1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767
Downstream geneEG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170D02.bB6Ng01-170D02.g
ACCDH960968DH960969
length1,0821,165
definitionDH960968|Mus musculus domesticus DNA, BAC clone: B6Ng01-170D02, 5' end.DH960969|Mus musculus domesticus DNA, BAC clone: B6Ng01-170D02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,588,437 - 65,589,528)(65,892,191 - 65,892,914)
sequence
gaattccactttagtaaaatacatgccacatgttttccagtagaaattac
ccatccccccacccccaccctttcctcactataaatttctagatattttc
ttagaactaattttcaggtaaaaatcttttctcatgaggtttctctcctg
tatgaattctctaatgaatcataagatcatatttgtgagtgaagcatttg
tcacatttactacatttgtaaggcttctttcttgtatgaattatctgatg
actactaggactgtgtttgttgttacagcatttgtcacactcactacatt
tataaggtttctctccagtatgaattctctgatgaatattaagactgtat
ttgtgaaaaaagcatttgtcacattcactacatctgtaaggtttctctcc
tgtatggattctctgatgtctaagcttgcatttcttggtgaaacatctgg
cacgttcactacatctgtaaggtttctttccactattggtttgtttcagc
ctgagtatttgtgtagagttaaaaaccttatcaagcactataccattgtg
ttctttctttcctatgtggattccttgatgtagaccagtgatagaacaca
aattgaaacagtttatacagtttttatgtttgcaaggtcctctggtgttt
ccattttgatgactgtttatgtttgatgactcaacacgtgtattcctgaa
gttagcttggtaaagtacactttgggtgtattcaggaataatttttgcca
tgctttgacctttgtaagacttctcctgtatattcacacactgggatgtg
ttggaccttttaatcattatgcatttatttgtttttaatgaggctttact
ggataaaatttcttttaaatcatcttcatgttcatgtccatatgaaaatt
caaatatgtatttatcatatttaaagatagtatgttattctatataagtg
aggacatgtcacttatgaataacatctcctggtctagtgtggtaaactct
ttaaagtattcagccggtggtggggggcaccctccctttttttccagcaa
ttgggaggcaaatgcaggcaggatttctgagt
gaattcctaaacctgataaacagttcggtgaagtagctggatataaaata
aactcaaacaagtcaatggcctttctctacacaaagaataaacaggctga
gaaagaaattagggaaacaaccccttctcaatagtcacaaataatataaa
atatctcggcgtgactctaactaaggaagtgaaagatctgtatgataaaa
acttcaagtctctgaagaaagaaattaaagaagatctcagaagatggaaa
gatctcccatgctcatggattggcaggatcaacattgtaaaaatggctat
cttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaa
ctcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaat
aacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctc
tggtggaatcaccatgcctgacctaaagctttactacagagcaattgtga
taaaaactgcatggtactggtatagagacagacaagtagaccaatggaat
agaattgaagacccagaaatgaacccacacacctatggtcacttgatctt
cgacaagggagctaaaaccatccagaggaagaaagacagcgttttcaaca
attggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgat
ccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaact
tcacataaaatcagagacactgaaacttatagaggagaaagtggggaaaa
gccttgaagatatgggcacagggaaaaattcctgaacagaacagcaatgg
catgtgctgtaagatcgagaattgacaaatgggacctaatgtaacttcca
agtttctgcaaggcaaaagacactcgtcataagacaaaagagagaaaaat
gaccctgatctttcaacactgatgtaaagaacaatgtgtatgtgttttat
gtgcatgtttgtgtggtgatattgaactgaaataatctttagcctataat
ttgataaaatttatgaagactcttcatctagagtgattttatatggtcta
gaatttactgacctcaccctgtgaaggtctcggggggaaaatttcaatag
ggaatttttctcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65588437_65589528
seq2: B6Ng01-170D02.b_44_1125 (reverse)

seq1  ACTCAGAAAT-CTGCCTGCATCTGCCTCCCAAGTGCTGGGATTAAA-GGA  48
      |||||||||| |||||||||| |||||||||| |||||| |  ||| |||
seq2  ACTCAGAAATCCTGCCTGCATTTGCCTCCCAATTGCTGGAAAAAAAGGGA  50

seq1  GTGTG-CCACCACCACCGGCCTGAATTACTTTTAAAGAGTTTACCACAAC  97
      | ||| || |||||||||| ||||| ||| ||||||||||||||||| ||
seq2  GGGTGCCCCCCACCACCGG-CTGAA-TAC-TTTAAAGAGTTTACCAC-AC  96

seq1  TAGACCAGGAGATGTTATTCATAGTGGACATTGTCCTCACTTATATAAGA  147
      |||||||||||||||||||||||   |||| ||||||||||||||| |||
seq2  TAGACCAGGAGATGTTATTCATAAGTGACA-TGTCCTCACTTATAT-AGA  144

seq1  ATAACATATCTATTCTTTTAAATATGATAAATACATATTTGAATTTTCAT  197
      |||||||| ||||   ||||||||||||||||||||||||||||||||||
seq2  ATAACATA-CTAT--CTTTAAATATGATAAATACATATTTGAATTTTCAT  191

seq1  ATGGACATGAACATGAAGATGATTTAAAAGATATTTTTATCCAGTAAAGC  247
      ||||||||||||||||||||||||||||||| | ||||||||||||||||
seq2  ATGGACATGAACATGAAGATGATTTAAAAGA-AATTTTATCCAGTAAAGC  240

seq1  CTCATTAAAAACAAATAAATGCATAATGATTAAAAGGTCCAACACATCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAAAACAAATAAATGCATAATGATTAAAAGGTCCAACACATCCC  290

seq1  AGTGTGTGAATATACAGGAGAAGTCTTACAAAGGTCAAAGCATGGCAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGAATATACAGGAGAAGTCTTACAAAGGTCAAAGCATGGCAAAA  340

seq1  ATTATTCCTGAATACACCCAAAGTGTACTTTACCAAGCTAACTTCAGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCTGAATACACCCAAAGTGTACTTTACCAAGCTAACTTCAGGAA  390

seq1  TACACGTGTTGAGTCATCAAACATAAACAGTCATCAAAATGGAAACACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGTGTTGAGTCATCAAACATAAACAGTCATCAAAATGGAAACACCA  440

seq1  GAGGACCTTGCAAACATAAAAACTGTATAAACTGTTTAAATTTGTGTTCT  497
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGGACCTTGCAAACATAAAAACTGTATAAACTGTTTCAATTTGTGTTCT  490

seq1  ATCACTGGTCTACATCAAGGAATCCACATAGGAAAGAAAGAGCACAATGG  547
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCACTGGTCTACATCAAGGAATCCACATAGGAAAGAAAGAACACAATGG  540

seq1  TATAGTGCTTGATAAAGTTTTTAACTCTACACAAATACTCAGGCTGAAAC  597
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATAGTGCTTGATAAGGTTTTTAACTCTACACAAATACTCAGGCTGAAAC  590

seq1  AAACCAATAGTGGAAAGAAACCTTACAAATGTAGTGAACGTGCCAGATGT  647
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAACCAATAGTGGAAAGAAACCTTACAGATGTAGTGAACGTGCCAGATGT  640

seq1  TTCACCAAGAAATGCAAGCTTAGACAACATCAGAGAATCCATACAGGAGA  697
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  TTCACCAAGAAATGCAAGCTTAG---ACATCAGAGAATCCATACAGGAGA  687

seq1  GAAACCTTACAGATGTAGTGAATGTGACAAATGCTTTTTTCACAAATACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTACAGATGTAGTGAATGTGACAAATGCTTTTTTCACAAATACA  737

seq1  GTCTTAATATTCATCAGAGAATTCATACTGGAGAGAAACCTTATAAATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATATTCATCAGAGAATTCATACTGGAGAGAAACCTTATAAATGT  787

seq1  AGTGAGTGTGACAAATGCTGTAACAACAAACACAGTCCTAGTAGTCATCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGTGACAAATGCTGTAACAACAAACACAGTCCTAGTAGTCATCA  837

seq1  GATAATTCATACAAGAAAGAAGCCTTACAAATGTAGTAAATGTGACAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTCATACAAGAAAGAAGCCTTACAAATGTAGTAAATGTGACAAAT  887

seq1  GCTTCACTCACAAATATGATCTTATGATTCATTAGAGAATTCATACAGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTCACAAATATGATCTTATGATTCATTAGAGAATTCATACAGGA  937

seq1  GAGAAACCTCATGAGAAAAGATTTTTACCTGAAAATTAGTTCTAAGAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCTCATGAGAAAAGATTTTTACCTGAAAATTAGTTCTAAGAAAA  987

seq1  TATCTAGAAATTTATAGTGAGGAAAGGGTGGGGGTGGGGGGATGGGTAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAAATTTATAGTGAGGAAAGGGTGGGGGTGGGGGGATGGGTAAT  1037

seq1  TTCTACTGGAAAACATGTGGCATGTATTTTACTAAAGTGGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGGAAAACATGTGGCATGTATTTTACTAAAGTGGAATTC  1082

seq1: chr13_65892191_65892914
seq2: B6Ng01-170D02.g_516_1236

seq1  AACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAA  50

seq1  TTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAA  100

seq1  TGGAATAGAATTGAAGACCCAGAAATGAACCCACATACCTATGGTCACTT  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTT  150

seq1  GATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTT  200
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  GATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCGTTT  200

seq1  TCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGA  250

seq1  ATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAA  300

seq1  GGAACTTCACATAAAATCAGAGACACTGAAACTTATAGAGGAGAAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCACATAAAATCAGAGACACTGAAACTTATAGAGGAGAAAGTGG  350

seq1  GGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACA  400
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAAAAGCCTTGAAGATATGGGCACA-GGGAAAAATTCCTGAACAGAACA  399

seq1  GCAATGGCATGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAA  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCAATGGCATGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGTA  449

seq1  ACTCCAAAGTTTCTGCAAGGCAAAAGACAC-CGTCAATAAGACAAAAAGA  499
      ||| | |||||||||||||||||||||||| |||| ||||||| ||||||
seq2  ACTTCCAAGTTTCTGCAAGGCAAAAGACACTCGTC-ATAAGAC-AAAAGA  497

seq1  GAGAAAAATGACCCTGA-CCTTCAACACCTGATGTAAAGAACAATGTGTA  548
      ||||||||||||||||| | ||||||| ||||||||||||||||||||||
seq2  GAGAAAAATGACCCTGATCTTTCAACA-CTGATGTAAAGAACAATGTGTA  546

seq1  TGTGTTTTATGTGCATGTTTGTGT-GTGATATTGAACTGAAATAATCTTT  597
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTGTTTTATGTGCATGTTTGTGTGGTGATATTGAACTGAAATAATCTTT  596

seq1  AGTCTCATATTTTGATAAAATTTATGGAGACCCTTCATCTAGAGTGA-TT  646
      || || ||| |||||||||||||||| |||| ||||||||||||||| ||
seq2  AGCCT-ATAATTTGATAAAATTTATGAAGACTCTTCATCTAGAGTGATTT  645

seq1  TATATGTCCATAGAATTTACTGACCTCACTCTGGTGAAGTTCTTGTGGGA  696
      ||||||  | ||||||||||||||||||| || |||||| ||| | ||| 
seq2  TATATGGTC-TAGAATTTACTGACCTCACCCT-GTGAAGGTCTCGGGGGG  693

seq1  AATATTTCCATTAGTGATTTTTCTCACT  724
      || ||||| ||  |  ||||||||||||
seq2  AAAATTTCAATAGGGAATTTTTCTCACT  721